Strain Fitness in Agrobacterium fabrum C58 around Atu4425

Experiment: Acetosyringone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetosyringone 5 mM
1,565,835	+		Atu4424	0.11	-0.1
1,565,843	-		Atu4424	0.12	-0.5
1,565,874	+		Atu4424	0.15	+0.0
1,565,884	-		Atu4424	0.15	+0.2
1,565,932	-		Atu4424	0.20	+0.7
1,565,947	+		Atu4424	0.22	+0.5
1,565,982	-		Atu4424	0.25	+0.3
1,566,240	-		Atu4424	0.50	+0.6
1,566,264	-		Atu4424	0.53	+0.3
1,566,276	-		Atu4424	0.54	-0.1
1,566,323	-		Atu4424	0.58	-0.1
1,566,323	-		Atu4424	0.58	-0.1
1,566,368	-		Atu4424	0.63	+0.0
1,566,383	-		Atu4424	0.64	+0.0
1,566,521	+		Atu4424	0.78	+0.4
1,566,526	+		Atu4424	0.78	-0.2
1,566,531	+		Atu4424	0.79	+0.2
1,566,554	+		Atu4424	0.81	-0.0
1,566,604	+		Atu4424	0.86	-0.3
1,566,731	+				+0.2
1,566,731	+				-0.7
1,566,777	-				-1.8
1,566,782	-				-0.7
1,566,825	-				-0.7
1,566,849	+		Atu4425	0.10	-0.4
1,566,857	-		Atu4425	0.11	-1.2
1,566,985	-		Atu4425	0.25	-0.6
1,567,159	-		Atu4425	0.44	-1.2
1,567,214	+		Atu4425	0.50	-0.4
1,567,276	+		Atu4425	0.57	-0.7
1,567,276	+		Atu4425	0.57	-1.1
1,567,292	+		Atu4425	0.59	-0.4
1,567,292	+		Atu4425	0.59	-0.2
1,567,323	+		Atu4425	0.62	+1.4
1,567,331	-		Atu4425	0.63	-0.3
1,567,405	-		Atu4425	0.71	-2.6
1,567,721	-				-0.3
1,567,769	+				+0.1
1,567,855	-		Atu4426	0.10	+0.5
1,567,894	+		Atu4426	0.12	+1.1
1,567,902	-		Atu4426	0.13	+0.2
1,567,919	-		Atu4426	0.14	-0.2
1,567,941	+		Atu4426	0.15	-0.1
1,568,055	+		Atu4426	0.21	-0.1
1,568,240	-		Atu4426	0.32	-0.4
1,568,392	+		Atu4426	0.40	-0.3
1,568,400	-		Atu4426	0.41	-0.7
1,568,419	+		Atu4426	0.42	+1.2
1,568,419	+		Atu4426	0.42	+0.1
1,568,419	+		Atu4426	0.42	+0.5
1,568,424	+		Atu4426	0.42	-0.7
1,568,427	-		Atu4426	0.42	-0.7
1,568,427	-		Atu4426	0.42	-0.5
1,568,427	-		Atu4426	0.42	-0.2
1,568,436	+		Atu4426	0.43	-0.2
1,568,437	-		Atu4426	0.43	-0.9
1,568,527	-		Atu4426	0.48	-0.5
1,568,542	-		Atu4426	0.49	-0.6
1,568,565	-		Atu4426	0.50	-0.4
1,568,585	-		Atu4426	0.51	-0.5
1,568,590	-		Atu4426	0.51	-0.2
1,568,599	-		Atu4426	0.52	-0.1
1,568,634	+		Atu4426	0.54	-0.6
1,568,666	-		Atu4426	0.56	-0.4