Strain Fitness in Agrobacterium fabrum C58 around Atu4099

Experiment: Acetosyringone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetosyringone 5 mM
1,218,180	+		Atu4098	0.24	-1.1
1,218,192	-		Atu4098	0.25	-0.2
1,218,278	-		Atu4098	0.33	-0.1
1,218,282	+		Atu4098	0.34	-0.1
1,218,288	-		Atu4098	0.34	+0.1
1,218,290	+		Atu4098	0.34	+0.3
1,218,290	-		Atu4098	0.34	-0.2
1,218,343	+		Atu4098	0.39	-0.7
1,218,458	+		Atu4098	0.51	+0.4
1,218,500	+		Atu4098	0.55	-0.1
1,218,501	-		Atu4098	0.55	-0.2
1,218,533	-		Atu4098	0.58	-0.1
1,218,538	-		Atu4098	0.58	-0.0
1,218,538	-		Atu4098	0.58	-0.6
1,218,545	+		Atu4098	0.59	-1.6
1,218,572	+		Atu4098	0.62	+0.1
1,218,683	-		Atu4098	0.72	-0.5
1,218,711	-		Atu4098	0.75	-0.2
1,218,893	-				+1.5
1,218,893	-				-0.5
1,219,009	+				+0.8
1,219,173	-		Atu4099	0.22	+1.0
1,219,204	-		Atu4099	0.25	-1.0
1,219,332	+		Atu4099	0.40	-0.4
1,219,350	+		Atu4099	0.42	-1.0
1,219,350	+		Atu4099	0.42	-0.5
1,219,499	-		Atu4099	0.58	-0.7
1,219,581	+		Atu4099	0.67	-0.8
1,219,679	-		Atu4099	0.78	-0.6
1,219,679	-		Atu4099	0.78	-0.6
1,219,736	+		Atu4099	0.84	-0.1
1,219,751	+		Atu4099	0.86	-0.8
1,219,826	-				+0.3
1,219,858	+				-1.4
1,219,862	-				+0.0
1,219,879	-				-0.8
1,219,911	-				-1.1
1,220,054	+		Atu4100	0.17	+1.5
1,220,068	-		Atu4100	0.20	+0.1
1,220,080	-		Atu4100	0.23	+1.5
1,220,080	-		Atu4100	0.23	+1.4
1,220,088	+		Atu4100	0.24	-0.3
1,220,231	+		Atu4100	0.54	+0.1
1,220,241	+		Atu4100	0.56	-0.0
1,220,241	+		Atu4100	0.56	+0.7
1,220,241	+		Atu4100	0.56	-0.2
1,220,241	+		Atu4100	0.56	-0.4
1,220,249	-		Atu4100	0.57	+0.0
1,220,249	-		Atu4100	0.57	+0.6
1,220,249	-		Atu4100	0.57	+0.1
1,220,249	-		Atu4100	0.57	-1.0
1,220,286	-		Atu4100	0.65	-1.0
1,220,286	-		Atu4100	0.65	-1.0
1,220,458	+				+0.1
1,220,578	+				-0.1
1,220,585	+		Atu4101	0.11	+1.4
1,220,670	+		Atu4101	0.28	+0.2
1,220,810	-		Atu4101	0.56	-0.2
1,220,831	+		Atu4101	0.60	-1.0
1,220,864	-		Atu4101	0.66	+0.1
1,220,864	-		Atu4101	0.66	+0.2