Strain Fitness in Agrobacterium fabrum C58 around Atu4030

Experiment: Acetosyringone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetosyringone 5 mM
1,143,413	-				+0.0
1,143,414	+				+0.5
1,143,576	-		Atu4029	0.14	-0.8
1,143,713	+		Atu4029	0.29	+0.7
1,143,713	+		Atu4029	0.29	-0.1
1,143,713	+		Atu4029	0.29	-0.0
1,143,721	-		Atu4029	0.29	+0.9
1,143,864	-		Atu4029	0.45	+0.4
1,143,901	-		Atu4029	0.49	+0.8
1,144,033	-		Atu4029	0.63	+0.2
1,144,094	+		Atu4029	0.70	+0.1
1,144,233	+		Atu4029	0.85	-0.3
1,144,475	-				-1.1
1,144,519	-		Atu4030	0.12	+0.3
1,144,546	-		Atu4030	0.15	+0.3
1,144,548	-		Atu4030	0.15	-0.1
1,144,639	-		Atu4030	0.25	-0.1
1,144,712	-		Atu4030	0.32	+0.6
1,144,807	+		Atu4030	0.42	+0.5
1,144,834	+		Atu4030	0.45	-0.3
1,144,992	-		Atu4030	0.62	+1.4
1,145,011	-		Atu4030	0.64	-0.2
1,145,013	+		Atu4030	0.64	+0.5
1,145,013	+		Atu4030	0.64	+0.9
1,145,013	+		Atu4030	0.64	+0.2
1,145,073	+		Atu4030	0.70	+0.5
1,145,221	+		Atu4030	0.86	+0.7
1,145,249	-		Atu4030	0.89	+0.7
1,145,287	+				+0.1
1,145,309	+				-0.1
1,145,314	+				+0.3
1,145,379	+				-0.2
1,145,522	-		Atu4031	0.18	-0.3
1,145,581	+		Atu4031	0.25	+0.1
1,145,589	-		Atu4031	0.25	-0.2
1,145,589	-		Atu4031	0.25	+0.2
1,145,616	+		Atu4031	0.28	+0.1
1,145,616	+		Atu4031	0.28	+0.1
1,145,617	-		Atu4031	0.28	-0.1
1,145,630	+		Atu4031	0.30	+0.1
1,145,674	-		Atu4031	0.35	-0.1
1,145,753	-		Atu4031	0.43	+0.1
1,145,753	-		Atu4031	0.43	-0.0
1,145,977	+		Atu4031	0.67	-0.4
1,145,979	+		Atu4031	0.67	+0.4
1,145,979	+		Atu4031	0.67	-0.2
1,145,987	-		Atu4031	0.68	+0.2
1,145,987	-		Atu4031	0.68	+1.0
1,145,987	-		Atu4031	0.68	+0.2
1,145,987	-		Atu4031	0.68	-1.1
1,146,044	+		Atu4031	0.74	-0.3
1,146,144	-		Atu4031	0.84	-0.5
1,146,185	-		Atu4031	0.89	+0.5
1,146,317	+				+0.7
1,146,325	-				-0.6
1,146,348	+				-0.1