Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3485 and Atu3486 are separated by 200 nucleotides Atu3486 and Atu3487 are separated by 47 nucleotides
Atu3485: Atu3485 - short chain dehydrogenase, at 534,232 to 536,328
Atu3485
Atu3486: Atu3486 - DeoR family transcriptional regulator, at 536,529 to 537,359
Atu3486
Atu3487: Atu3487 - sugar ABC transporter substrate-binding protein, at 537,407 to 538,417
Atu3487
Position (kb) 536
537
538 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 535.616 kb on - strand, within Atu3485 at 535.624 kb on + strand, within Atu3485 at 535.648 kb on + strand, within Atu3485 at 535.666 kb on + strand, within Atu3485 at 535.694 kb on - strand, within Atu3485 at 535.725 kb on + strand, within Atu3485 at 535.822 kb on - strand, within Atu3485 at 535.904 kb on + strand, within Atu3485 at 535.945 kb on + strand, within Atu3485 at 535.974 kb on + strand, within Atu3485 at 535.980 kb on + strand, within Atu3485 at 536.041 kb on - strand, within Atu3485 at 536.538 kb on + strand at 536.573 kb on + strand at 536.592 kb on + strand at 536.597 kb on + strand at 536.605 kb on - strand at 536.872 kb on - strand, within Atu3486 at 536.924 kb on - strand, within Atu3486 at 537.003 kb on + strand, within Atu3486 at 537.423 kb on + strand at 537.450 kb on + strand at 537.504 kb on + strand at 537.553 kb on + strand, within Atu3487 at 537.583 kb on - strand, within Atu3487 at 537.601 kb on + strand, within Atu3487 at 537.606 kb on + strand, within Atu3487 at 537.609 kb on - strand, within Atu3487 at 537.616 kb on + strand, within Atu3487 at 537.616 kb on + strand, within Atu3487 at 537.616 kb on + strand, within Atu3487 at 537.801 kb on + strand, within Atu3487 at 537.809 kb on - strand, within Atu3487 at 537.976 kb on - strand, within Atu3487 at 537.977 kb on - strand, within Atu3487 at 538.086 kb on - strand, within Atu3487 at 538.141 kb on - strand, within Atu3487 at 538.152 kb on + strand, within Atu3487 at 538.157 kb on + strand, within Atu3487 at 538.160 kb on - strand, within Atu3487 at 538.273 kb on + strand, within Atu3487
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 535,616 - Atu3485 0.66 -0.1 535,624 + Atu3485 0.66 +0.3 535,648 + Atu3485 0.68 +0.3 535,666 + Atu3485 0.68 +0.5 535,694 - Atu3485 0.70 -1.9 535,725 + Atu3485 0.71 -0.3 535,822 - Atu3485 0.76 +0.9 535,904 + Atu3485 0.80 -3.1 535,945 + Atu3485 0.82 +0.4 535,974 + Atu3485 0.83 -0.5 535,980 + Atu3485 0.83 -0.2 536,041 - Atu3485 0.86 -0.2 536,538 + -0.1 536,573 + -0.3 536,592 + -1.1 536,597 + +0.5 536,605 - -0.6 536,872 - Atu3486 0.41 -0.7 536,924 - Atu3486 0.48 -0.2 537,003 + Atu3486 0.57 -0.4 537,423 + -0.7 537,450 + -0.3 537,504 + +0.2 537,553 + Atu3487 0.14 -0.6 537,583 - Atu3487 0.17 -0.2 537,601 + Atu3487 0.19 +0.2 537,606 + Atu3487 0.20 +0.4 537,609 - Atu3487 0.20 +0.7 537,616 + Atu3487 0.21 -0.7 537,616 + Atu3487 0.21 -0.1 537,616 + Atu3487 0.21 -0.4 537,801 + Atu3487 0.39 +0.3 537,809 - Atu3487 0.40 -1.7 537,976 - Atu3487 0.56 +0.4 537,977 - Atu3487 0.56 +0.7 538,086 - Atu3487 0.67 -1.1 538,141 - Atu3487 0.73 +0.8 538,152 + Atu3487 0.74 +0.3 538,157 + Atu3487 0.74 +0.1 538,160 - Atu3487 0.74 +0.8 538,273 + Atu3487 0.86 +0.4
Or see this region's nucleotide sequence