Strain Fitness in Agrobacterium fabrum C58 around Atu3008

Experiment: Acetosyringone 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3006 and Atu3007 are separated by 19 nucleotidesAtu3007 and Atu3008 are separated by 92 nucleotidesAtu3008 and Atu3009 are separated by 137 nucleotides Atu3006: Atu3006 - hypothetical protein, at 3,393 to 4,811 Atu3006 Atu3007: Atu3007 - hypothetical protein, at 4,831 to 5,085 Atu3007 Atu3008: Atu3008 - hypothetical protein, at 5,178 to 5,372 Atu3008 Atu3009: Atu3009 - exopolysaccharide production protein, at 5,510 to 6,577 Atu3009 Position (kb) 5 6Strain fitness (log2 ratio) -1 0 1 2at 4.187 kb on - strand, within Atu3006at 4.217 kb on - strand, within Atu3006at 4.263 kb on + strand, within Atu3006at 4.282 kb on - strand, within Atu3006at 4.373 kb on + strand, within Atu3006at 4.757 kb on - strandat 4.789 kb on - strandat 4.935 kb on - strand, within Atu3007at 5.166 kb on - strandat 5.338 kb on - strand, within Atu3008at 5.535 kb on - strandat 5.738 kb on + strand, within Atu3009at 5.885 kb on - strand, within Atu3009

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetosyringone 5 mM
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4,187 - Atu3006 0.56 +1.2
4,217 - Atu3006 0.58 +0.4
4,263 + Atu3006 0.61 -0.5
4,282 - Atu3006 0.63 +0.0
4,373 + Atu3006 0.69 +0.6
4,757 - +0.7
4,789 - +2.4
4,935 - Atu3007 0.41 +1.7
5,166 - +0.9
5,338 - Atu3008 0.82 +1.2
5,535 - +1.2
5,738 + Atu3009 0.21 -1.7
5,885 - Atu3009 0.35 +0.2

Or see this region's nucleotide sequence