Strain Fitness in Agrobacterium fabrum C58 around Atu2025

Experiment: Acetosyringone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acetosyringone 5 mM
1,986,564	-				+0.2
1,986,623	+				-0.3
1,986,890	-		Atu2025	0.35	-1.4
1,987,111	+		Atu2025	0.67	+0.5
1,987,123	-		Atu2025	0.68	+0.1
1,987,150	+		Atu2025	0.72	-1.1
1,987,162	-		Atu2025	0.74	-0.7
1,987,174	+		Atu2025	0.76	-1.2
1,987,201	-		Atu2025	0.79	+0.0
1,987,224	-		Atu2025	0.83	-0.5
1,987,315	-				-0.3
1,987,385	-				+0.6
1,987,385	-				-0.3
1,987,449	+				-0.5
1,987,452	-				+0.5
1,987,452	-				-0.1
1,987,495	+		Atu2026	0.13	+0.7
1,987,633	-		Atu2026	0.26	-0.1
1,987,863	+		Atu2026	0.46	-1.4
1,987,872	-		Atu2026	0.47	+0.3
1,987,950	-		Atu2026	0.54	+0.2
1,987,950	-		Atu2026	0.54	-0.1
1,987,950	-		Atu2026	0.54	+0.1
1,988,021	-		Atu2026	0.60	-0.5
1,988,142	-		Atu2026	0.71	-1.1
1,988,286	-		Atu2026	0.84	-1.1
1,988,313	+		Atu2026	0.86	+0.6