Experiment: Acetosyringone 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8137 and Atu0800 are separated by 128 nucleotides Atu0800 and Atu0801 are separated by 84 nucleotides Atu0801 and Atu0802 are separated by 433 nucleotides
Atu8137: Atu8137 - hypothetical protein, at 794,951 to 795,478
Atu8137
Atu0800: Atu0800 - hypothetical protein, at 795,607 to 796,287
Atu0800
Atu0801: Atu0801 - chromosome segregation protein, at 796,372 to 799,839
Atu0801
Atu0802: Atu0802 - hypothetical protein, at 800,273 to 801,244
Atu0802
Position (kb) 796
797
798
799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 795.451 kb on - strand at 795.472 kb on + strand at 795.480 kb on - strand at 795.482 kb on + strand at 795.519 kb on + strand at 795.524 kb on + strand at 795.527 kb on - strand at 795.577 kb on + strand at 795.577 kb on + strand at 796.281 kb on + strand at 796.431 kb on - strand at 796.513 kb on - strand at 796.740 kb on + strand, within Atu0801 at 796.835 kb on - strand, within Atu0801 at 796.840 kb on + strand, within Atu0801 at 796.840 kb on + strand, within Atu0801 at 796.890 kb on + strand, within Atu0801 at 796.913 kb on + strand, within Atu0801 at 797.163 kb on - strand, within Atu0801 at 797.322 kb on + strand, within Atu0801 at 797.433 kb on - strand, within Atu0801 at 797.476 kb on + strand, within Atu0801 at 797.692 kb on + strand, within Atu0801 at 797.848 kb on + strand, within Atu0801 at 797.867 kb on - strand, within Atu0801 at 797.948 kb on + strand, within Atu0801 at 798.043 kb on - strand, within Atu0801 at 798.081 kb on - strand, within Atu0801 at 798.081 kb on - strand, within Atu0801 at 798.083 kb on + strand, within Atu0801 at 798.113 kb on + strand, within Atu0801 at 798.113 kb on + strand, within Atu0801 at 798.372 kb on + strand, within Atu0801 at 798.381 kb on - strand, within Atu0801 at 798.395 kb on + strand, within Atu0801 at 798.395 kb on + strand, within Atu0801 at 798.482 kb on - strand, within Atu0801 at 798.614 kb on + strand, within Atu0801 at 798.636 kb on + strand, within Atu0801 at 798.653 kb on + strand, within Atu0801 at 798.692 kb on - strand, within Atu0801 at 798.747 kb on - strand, within Atu0801 at 798.747 kb on - strand, within Atu0801 at 798.755 kb on - strand, within Atu0801 at 798.778 kb on - strand, within Atu0801 at 798.840 kb on + strand, within Atu0801 at 799.078 kb on - strand, within Atu0801 at 799.080 kb on - strand, within Atu0801 at 799.101 kb on - strand, within Atu0801 at 799.101 kb on - strand, within Atu0801 at 799.133 kb on + strand, within Atu0801 at 799.247 kb on + strand, within Atu0801 at 799.247 kb on + strand, within Atu0801 at 799.265 kb on + strand, within Atu0801 at 799.359 kb on - strand, within Atu0801 at 799.359 kb on - strand, within Atu0801 at 799.494 kb on - strand at 799.649 kb on - strand at 799.666 kb on - strand at 799.951 kb on + strand at 799.959 kb on - strand at 799.959 kb on - strand at 799.959 kb on - strand at 799.963 kb on + strand at 799.963 kb on + strand at 799.963 kb on + strand at 799.963 kb on + strand at 799.971 kb on - strand at 800.107 kb on + strand at 800.127 kb on - strand at 800.141 kb on + strand at 800.142 kb on + strand at 800.286 kb on + strand at 800.288 kb on - strand at 800.325 kb on + strand at 800.325 kb on + strand at 800.466 kb on - strand, within Atu0802 at 800.515 kb on + strand, within Atu0802 at 800.641 kb on - strand, within Atu0802 at 800.706 kb on + strand, within Atu0802 at 800.712 kb on + strand, within Atu0802 at 800.817 kb on - strand, within Atu0802
Per-strain Table
Position Strand Gene LocusTag Fraction Acetosyringone 5 mM remove 795,451 - -1.3 795,472 + +1.1 795,480 - +1.1 795,482 + -2.1 795,519 + +0.5 795,524 + +0.1 795,527 - +0.9 795,577 + +1.6 795,577 + +1.0 796,281 + -0.0 796,431 - +0.1 796,513 - +0.3 796,740 + Atu0801 0.11 -0.3 796,835 - Atu0801 0.13 -0.1 796,840 + Atu0801 0.13 -0.9 796,840 + Atu0801 0.13 -0.7 796,890 + Atu0801 0.15 -0.3 796,913 + Atu0801 0.16 -0.3 797,163 - Atu0801 0.23 +0.7 797,322 + Atu0801 0.27 -1.0 797,433 - Atu0801 0.31 -0.7 797,476 + Atu0801 0.32 +0.6 797,692 + Atu0801 0.38 -0.3 797,848 + Atu0801 0.43 -0.6 797,867 - Atu0801 0.43 -0.6 797,948 + Atu0801 0.45 -1.2 798,043 - Atu0801 0.48 -1.0 798,081 - Atu0801 0.49 -0.5 798,081 - Atu0801 0.49 -0.9 798,083 + Atu0801 0.49 -0.3 798,113 + Atu0801 0.50 -3.0 798,113 + Atu0801 0.50 -1.5 798,372 + Atu0801 0.58 -0.0 798,381 - Atu0801 0.58 -0.1 798,395 + Atu0801 0.58 +0.1 798,395 + Atu0801 0.58 -0.2 798,482 - Atu0801 0.61 -0.8 798,614 + Atu0801 0.65 -0.4 798,636 + Atu0801 0.65 +0.3 798,653 + Atu0801 0.66 -0.0 798,692 - Atu0801 0.67 +0.2 798,747 - Atu0801 0.68 -0.6 798,747 - Atu0801 0.68 -0.1 798,755 - Atu0801 0.69 -0.4 798,778 - Atu0801 0.69 -0.5 798,840 + Atu0801 0.71 -0.2 799,078 - Atu0801 0.78 -0.1 799,080 - Atu0801 0.78 -0.4 799,101 - Atu0801 0.79 -1.3 799,101 - Atu0801 0.79 -3.0 799,133 + Atu0801 0.80 -1.5 799,247 + Atu0801 0.83 -0.6 799,247 + Atu0801 0.83 -0.4 799,265 + Atu0801 0.83 -0.2 799,359 - Atu0801 0.86 +0.0 799,359 - Atu0801 0.86 -1.2 799,494 - -0.1 799,649 - +0.0 799,666 - +0.0 799,951 + +0.4 799,959 - +0.6 799,959 - -0.2 799,959 - -0.4 799,963 + -0.2 799,963 + +0.2 799,963 + +0.1 799,963 + -0.1 799,971 - -0.6 800,107 + +0.0 800,127 - -0.3 800,141 + -0.6 800,142 + -0.3 800,286 + +0.0 800,288 - +0.2 800,325 + -0.7 800,325 + +1.0 800,466 - Atu0802 0.20 -0.3 800,515 + Atu0802 0.25 -0.7 800,641 - Atu0802 0.38 -0.4 800,706 + Atu0802 0.45 -0.4 800,712 + Atu0802 0.45 +0.0 800,817 - Atu0802 0.56 -0.7
Or see this region's nucleotide sequence