Strain Fitness in Agrobacterium fabrum C58 around Atu0045

Experiment: Acetosyringone 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0043 and Atu0044 are separated by 242 nucleotidesAtu0044 and Atu0045 are separated by 87 nucleotidesAtu0045 and Atu0046 are separated by 194 nucleotides Atu0043: Atu0043 - imidazoleglycerol-phosphate dehydratase, at 43,805 to 44,401 Atu0043 Atu0044: Atu0044 - heat shock protein hslV, at 44,644 to 45,126 Atu0044 Atu0045: Atu0045 - heat shock chaperone, at 45,214 to 46,521 Atu0045 Atu0046: Atu0046 - hypothetical protein, at 46,716 to 47,681 Atu0046 Position (kb) 45 46 47Strain fitness (log2 ratio) -1 0 1at 44.286 kb on - strand, within Atu0043at 44.385 kb on + strandat 44.386 kb on - strandat 44.442 kb on - strandat 44.470 kb on - strandat 44.478 kb on - strandat 44.529 kb on + strandat 44.529 kb on + strandat 44.537 kb on - strandat 44.539 kb on + strandat 44.539 kb on + strandat 44.549 kb on + strandat 44.579 kb on - strandat 44.641 kb on - strandat 44.666 kb on + strandat 44.666 kb on + strandat 44.666 kb on + strandat 44.674 kb on - strandat 44.730 kb on - strand, within Atu0044at 44.762 kb on + strand, within Atu0044at 44.770 kb on - strand, within Atu0044at 44.793 kb on + strand, within Atu0044at 44.827 kb on + strand, within Atu0044at 44.827 kb on + strand, within Atu0044at 44.827 kb on + strand, within Atu0044at 44.835 kb on - strand, within Atu0044at 44.983 kb on + strand, within Atu0044at 45.016 kb on + strand, within Atu0044at 45.088 kb on - strandat 45.089 kb on + strandat 45.097 kb on - strandat 45.129 kb on - strandat 45.160 kb on - strandat 45.296 kb on + strandat 45.296 kb on + strandat 45.296 kb on + strandat 45.304 kb on - strandat 45.312 kb on - strandat 45.450 kb on - strand, within Atu0045at 45.453 kb on + strand, within Atu0045at 45.526 kb on - strand, within Atu0045at 45.576 kb on - strand, within Atu0045at 45.617 kb on + strand, within Atu0045at 45.679 kb on + strand, within Atu0045at 45.679 kb on + strand, within Atu0045at 45.812 kb on - strand, within Atu0045at 45.828 kb on + strand, within Atu0045at 45.836 kb on + strand, within Atu0045at 45.849 kb on + strand, within Atu0045at 45.857 kb on - strand, within Atu0045at 45.857 kb on - strand, within Atu0045at 46.013 kb on + strand, within Atu0045at 46.030 kb on + strand, within Atu0045at 46.088 kb on + strand, within Atu0045at 46.114 kb on - strand, within Atu0045at 46.114 kb on - strand, within Atu0045at 46.259 kb on - strand, within Atu0045at 46.273 kb on + strand, within Atu0045at 46.533 kb on - strandat 46.569 kb on + strandat 46.855 kb on + strand, within Atu0046at 46.922 kb on - strand, within Atu0046at 47.009 kb on + strand, within Atu0046at 47.019 kb on - strand, within Atu0046at 47.050 kb on - strand, within Atu0046at 47.100 kb on + strand, within Atu0046at 47.103 kb on - strand, within Atu0046at 47.107 kb on - strand, within Atu0046at 47.117 kb on + strand, within Atu0046at 47.180 kb on - strand, within Atu0046at 47.294 kb on - strand, within Atu0046at 47.309 kb on + strand, within Atu0046at 47.453 kb on - strand, within Atu0046at 47.519 kb on - strand, within Atu0046

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetosyringone 5 mM
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44,286 - Atu0043 0.81 +1.2
44,385 + +0.4
44,386 - -0.6
44,442 - -0.6
44,470 - -0.2
44,478 - +1.1
44,529 + -0.2
44,529 + +1.4
44,537 - +0.6
44,539 + +0.0
44,539 + +0.3
44,549 + -0.6
44,579 - -0.3
44,641 - +0.1
44,666 + +1.3
44,666 + -0.3
44,666 + +0.3
44,674 - -0.5
44,730 - Atu0044 0.18 -0.0
44,762 + Atu0044 0.24 -0.8
44,770 - Atu0044 0.26 -0.2
44,793 + Atu0044 0.31 -0.4
44,827 + Atu0044 0.38 +0.4
44,827 + Atu0044 0.38 +0.6
44,827 + Atu0044 0.38 +0.3
44,835 - Atu0044 0.40 +0.8
44,983 + Atu0044 0.70 -0.0
45,016 + Atu0044 0.77 +0.8
45,088 - +0.9
45,089 + +0.5
45,097 - +0.3
45,129 - +0.4
45,160 - +0.6
45,296 + +0.0
45,296 + +0.6
45,296 + +0.2
45,304 - +0.5
45,312 - +0.3
45,450 - Atu0045 0.18 +0.4
45,453 + Atu0045 0.18 +0.8
45,526 - Atu0045 0.24 +0.3
45,576 - Atu0045 0.28 -0.3
45,617 + Atu0045 0.31 +0.0
45,679 + Atu0045 0.36 +0.5
45,679 + Atu0045 0.36 +0.7
45,812 - Atu0045 0.46 +0.6
45,828 + Atu0045 0.47 +1.3
45,836 + Atu0045 0.48 +0.5
45,849 + Atu0045 0.49 +0.3
45,857 - Atu0045 0.49 +0.7
45,857 - Atu0045 0.49 +0.2
46,013 + Atu0045 0.61 +0.4
46,030 + Atu0045 0.62 +0.5
46,088 + Atu0045 0.67 +1.0
46,114 - Atu0045 0.69 +0.4
46,114 - Atu0045 0.69 +0.2
46,259 - Atu0045 0.80 +0.2
46,273 + Atu0045 0.81 -0.3
46,533 - +0.8
46,569 + +0.1
46,855 + Atu0046 0.14 -0.1
46,922 - Atu0046 0.21 +0.4
47,009 + Atu0046 0.30 +0.6
47,019 - Atu0046 0.31 -0.0
47,050 - Atu0046 0.35 -0.3
47,100 + Atu0046 0.40 -0.3
47,103 - Atu0046 0.40 +0.3
47,107 - Atu0046 0.40 +0.1
47,117 + Atu0046 0.42 +0.1
47,180 - Atu0046 0.48 +0.2
47,294 - Atu0046 0.60 +0.1
47,309 + Atu0046 0.61 +0.7
47,453 - Atu0046 0.76 +0.6
47,519 - Atu0046 0.83 +0.2

Or see this region's nucleotide sequence