Experiment: Salicylic 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3344 and Atu3345 overlap by 4 nucleotides Atu3345 and Atu3346 overlap by 1 nucleotides Atu3346 and Atu3347 are separated by 143 nucleotides
Atu3344: Atu3344 - radical activating protein, at 378,583 to 379,338
Atu3344
Atu3345: Atu3345 - 6-pyruvoyl tetrahydrobiopterin synthase, at 379,335 to 379,691
Atu3345
Atu3346: Atu3346 - succinoglycan biosynthesis regulator, at 379,691 to 380,401
Atu3346
Atu3347: Atu3347 - hypothetical protein, at 380,545 to 381,678
Atu3347
Position (kb) 379
380
381 Strain fitness (log2 ratio) -1
0
1
2 at 378.696 kb on - strand, within Atu3344 at 378.712 kb on - strand, within Atu3344 at 378.764 kb on - strand, within Atu3344 at 378.857 kb on - strand, within Atu3344 at 378.880 kb on + strand, within Atu3344 at 378.882 kb on + strand, within Atu3344 at 379.006 kb on + strand, within Atu3344 at 379.014 kb on - strand, within Atu3344 at 379.014 kb on - strand, within Atu3344 at 379.014 kb on - strand, within Atu3344 at 379.110 kb on - strand, within Atu3344 at 379.161 kb on - strand, within Atu3344 at 379.189 kb on - strand, within Atu3344 at 379.287 kb on - strand at 379.321 kb on - strand at 379.365 kb on - strand at 379.462 kb on - strand, within Atu3345 at 379.542 kb on + strand, within Atu3345 at 379.595 kb on + strand, within Atu3345 at 379.639 kb on + strand, within Atu3345 at 379.710 kb on + strand at 379.710 kb on + strand at 379.710 kb on + strand at 379.718 kb on - strand at 379.718 kb on - strand at 379.718 kb on - strand at 379.723 kb on - strand at 379.923 kb on - strand, within Atu3346 at 379.923 kb on - strand, within Atu3346 at 379.936 kb on + strand, within Atu3346 at 379.944 kb on - strand, within Atu3346 at 379.960 kb on - strand, within Atu3346 at 379.967 kb on + strand, within Atu3346 at 379.992 kb on + strand, within Atu3346 at 380.080 kb on + strand, within Atu3346 at 380.201 kb on - strand, within Atu3346 at 380.326 kb on - strand, within Atu3346 at 380.379 kb on + strand at 380.441 kb on + strand at 380.535 kb on + strand at 380.638 kb on + strand at 380.666 kb on - strand, within Atu3347 at 380.684 kb on + strand, within Atu3347 at 380.697 kb on - strand, within Atu3347 at 380.752 kb on - strand, within Atu3347 at 380.767 kb on + strand, within Atu3347 at 380.893 kb on + strand, within Atu3347 at 380.940 kb on + strand, within Atu3347 at 380.940 kb on + strand, within Atu3347 at 380.948 kb on - strand, within Atu3347 at 381.196 kb on - strand, within Atu3347 at 381.242 kb on - strand, within Atu3347 at 381.254 kb on + strand, within Atu3347 at 381.262 kb on - strand, within Atu3347 at 381.272 kb on - strand, within Atu3347
Per-strain Table
Position Strand Gene LocusTag Fraction Salicylic 1.25 mM remove 378,696 - Atu3344 0.15 -0.5 378,712 - Atu3344 0.17 +1.2 378,764 - Atu3344 0.24 -0.2 378,857 - Atu3344 0.36 +0.2 378,880 + Atu3344 0.39 -0.6 378,882 + Atu3344 0.40 -0.2 379,006 + Atu3344 0.56 -0.1 379,014 - Atu3344 0.57 +0.1 379,014 - Atu3344 0.57 -0.2 379,014 - Atu3344 0.57 +0.1 379,110 - Atu3344 0.70 -0.0 379,161 - Atu3344 0.76 +0.2 379,189 - Atu3344 0.80 +0.2 379,287 - -0.1 379,321 - +0.3 379,365 - -0.8 379,462 - Atu3345 0.36 -0.3 379,542 + Atu3345 0.58 -0.4 379,595 + Atu3345 0.73 +0.7 379,639 + Atu3345 0.85 -0.8 379,710 + +0.9 379,710 + +0.2 379,710 + -0.5 379,718 - +0.0 379,718 - +0.4 379,718 - +0.0 379,723 - -0.1 379,923 - Atu3346 0.33 +0.2 379,923 - Atu3346 0.33 -0.0 379,936 + Atu3346 0.34 +0.4 379,944 - Atu3346 0.36 -0.7 379,960 - Atu3346 0.38 +0.4 379,967 + Atu3346 0.39 +1.4 379,992 + Atu3346 0.42 +1.2 380,080 + Atu3346 0.55 +0.2 380,201 - Atu3346 0.72 +0.2 380,326 - Atu3346 0.89 -0.4 380,379 + -0.8 380,441 + -0.1 380,535 + -0.3 380,638 + +0.0 380,666 - Atu3347 0.11 +2.2 380,684 + Atu3347 0.12 -1.1 380,697 - Atu3347 0.13 -0.1 380,752 - Atu3347 0.18 -0.1 380,767 + Atu3347 0.20 -0.0 380,893 + Atu3347 0.31 +0.7 380,940 + Atu3347 0.35 +1.4 380,940 + Atu3347 0.35 +0.1 380,948 - Atu3347 0.36 +0.8 381,196 - Atu3347 0.57 +0.0 381,242 - Atu3347 0.61 +0.9 381,254 + Atu3347 0.63 -0.3 381,262 - Atu3347 0.63 +0.4 381,272 - Atu3347 0.64 +0.4
Or see this region's nucleotide sequence