Experiment: Salicylic 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0608 and Atu0609 are separated by 151 nucleotides Atu0609 and Atu0610 are separated by 81 nucleotides
Atu0608: Atu0608 - transcriptional regulator, at 594,823 to 596,238
Atu0608
Atu0609: Atu0609 - ABC transporter, substrate binding protein (putrescine), at 596,390 to 597,487
Atu0609
Atu0610: Atu0610 - ABC transporter, nucleotide binding/ATPase protein, at 597,569 to 598,726
Atu0610
Position (kb) 596
597
598 Strain fitness (log2 ratio) -1
0
1 at 595.412 kb on + strand, within Atu0608 at 595.418 kb on - strand, within Atu0608 at 595.487 kb on - strand, within Atu0608 at 595.532 kb on + strand, within Atu0608 at 595.659 kb on + strand, within Atu0608 at 595.659 kb on + strand, within Atu0608 at 595.659 kb on + strand, within Atu0608 at 595.659 kb on + strand, within Atu0608 at 595.756 kb on - strand, within Atu0608 at 595.784 kb on - strand, within Atu0608 at 595.901 kb on - strand, within Atu0608 at 595.903 kb on - strand, within Atu0608 at 596.015 kb on + strand, within Atu0608 at 596.029 kb on - strand, within Atu0608 at 596.029 kb on - strand, within Atu0608 at 596.049 kb on - strand, within Atu0608 at 596.107 kb on + strand at 596.146 kb on - strand at 596.196 kb on + strand at 596.274 kb on - strand at 596.314 kb on + strand at 596.415 kb on + strand at 596.423 kb on - strand at 596.428 kb on - strand at 596.437 kb on + strand at 596.449 kb on - strand at 596.464 kb on + strand at 596.464 kb on + strand at 596.467 kb on - strand at 596.472 kb on - strand at 596.503 kb on - strand, within Atu0609 at 596.561 kb on + strand, within Atu0609 at 596.579 kb on + strand, within Atu0609 at 596.620 kb on - strand, within Atu0609 at 596.620 kb on - strand, within Atu0609 at 596.688 kb on + strand, within Atu0609 at 596.712 kb on - strand, within Atu0609 at 596.818 kb on + strand, within Atu0609 at 596.818 kb on + strand, within Atu0609 at 596.826 kb on - strand, within Atu0609 at 596.927 kb on + strand, within Atu0609 at 597.043 kb on - strand, within Atu0609 at 597.164 kb on - strand, within Atu0609 at 597.178 kb on + strand, within Atu0609 at 597.204 kb on - strand, within Atu0609 at 597.296 kb on + strand, within Atu0609 at 597.322 kb on + strand, within Atu0609 at 597.376 kb on + strand, within Atu0609 at 597.376 kb on + strand, within Atu0609 at 597.407 kb on + strand at 597.409 kb on + strand at 597.429 kb on + strand at 597.446 kb on + strand at 597.456 kb on - strand at 597.469 kb on + strand at 597.477 kb on - strand at 597.477 kb on - strand at 597.510 kb on - strand at 597.579 kb on - strand at 597.606 kb on + strand at 597.788 kb on - strand, within Atu0610 at 597.809 kb on - strand, within Atu0610 at 597.868 kb on - strand, within Atu0610 at 597.939 kb on + strand, within Atu0610 at 597.957 kb on - strand, within Atu0610 at 597.972 kb on + strand, within Atu0610 at 598.001 kb on + strand, within Atu0610 at 598.081 kb on + strand, within Atu0610 at 598.081 kb on + strand, within Atu0610 at 598.122 kb on + strand, within Atu0610 at 598.130 kb on - strand, within Atu0610 at 598.208 kb on - strand, within Atu0610 at 598.244 kb on + strand, within Atu0610 at 598.249 kb on + strand, within Atu0610 at 598.396 kb on + strand, within Atu0610 at 598.405 kb on + strand, within Atu0610 at 598.408 kb on + strand, within Atu0610 at 598.468 kb on + strand, within Atu0610 at 598.476 kb on - strand, within Atu0610
Per-strain Table
Position Strand Gene LocusTag Fraction Salicylic 1.25 mM remove 595,412 + Atu0608 0.42 -0.6 595,418 - Atu0608 0.42 -1.3 595,487 - Atu0608 0.47 +0.0 595,532 + Atu0608 0.50 +0.1 595,659 + Atu0608 0.59 -0.3 595,659 + Atu0608 0.59 -0.5 595,659 + Atu0608 0.59 -0.1 595,659 + Atu0608 0.59 -0.4 595,756 - Atu0608 0.66 -0.4 595,784 - Atu0608 0.68 -1.3 595,901 - Atu0608 0.76 +0.1 595,903 - Atu0608 0.76 +0.8 596,015 + Atu0608 0.84 -0.4 596,029 - Atu0608 0.85 -0.3 596,029 - Atu0608 0.85 +0.1 596,049 - Atu0608 0.87 -0.0 596,107 + -0.1 596,146 - -0.0 596,196 + +0.5 596,274 - +0.6 596,314 + +0.3 596,415 + -0.6 596,423 - +0.9 596,428 - -0.3 596,437 + -0.0 596,449 - +0.1 596,464 + -0.3 596,464 + -0.8 596,467 - +0.1 596,472 - +0.1 596,503 - Atu0609 0.10 +0.7 596,561 + Atu0609 0.16 +0.4 596,579 + Atu0609 0.17 +0.4 596,620 - Atu0609 0.21 +0.8 596,620 - Atu0609 0.21 +0.1 596,688 + Atu0609 0.27 -0.1 596,712 - Atu0609 0.29 -0.2 596,818 + Atu0609 0.39 +0.1 596,818 + Atu0609 0.39 -0.1 596,826 - Atu0609 0.40 -0.1 596,927 + Atu0609 0.49 -0.0 597,043 - Atu0609 0.59 -0.2 597,164 - Atu0609 0.70 -0.3 597,178 + Atu0609 0.72 +0.3 597,204 - Atu0609 0.74 +0.7 597,296 + Atu0609 0.83 +1.0 597,322 + Atu0609 0.85 +0.8 597,376 + Atu0609 0.90 +0.6 597,376 + Atu0609 0.90 +0.0 597,407 + +0.4 597,409 + +0.7 597,429 + +1.0 597,446 + +0.2 597,456 - -0.6 597,469 + -0.1 597,477 - -0.2 597,477 - -0.0 597,510 - -0.2 597,579 - +0.4 597,606 + -0.1 597,788 - Atu0610 0.19 -0.2 597,809 - Atu0610 0.21 +0.6 597,868 - Atu0610 0.26 -0.2 597,939 + Atu0610 0.32 +0.1 597,957 - Atu0610 0.34 +0.4 597,972 + Atu0610 0.35 -1.1 598,001 + Atu0610 0.37 +0.4 598,081 + Atu0610 0.44 +0.1 598,081 + Atu0610 0.44 -0.2 598,122 + Atu0610 0.48 +0.5 598,130 - Atu0610 0.48 -0.3 598,208 - Atu0610 0.55 +0.2 598,244 + Atu0610 0.58 +1.2 598,249 + Atu0610 0.59 -0.1 598,396 + Atu0610 0.71 +0.9 598,405 + Atu0610 0.72 +0.3 598,408 + Atu0610 0.72 +0.8 598,468 + Atu0610 0.78 -0.3 598,476 - Atu0610 0.78 -0.2
Or see this region's nucleotide sequence