Experiment: Salicylic 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0266 and Atu0267 overlap by 4 nucleotides Atu0267 and Atu0268 are separated by 11 nucleotides Atu0268 and Atu0269 are separated by 189 nucleotides Atu0269 and Atu0270 are separated by 0 nucleotides
Atu0266: Atu0266 - oxidoreductase, at 263,264 to 264,247
Atu0266
Atu0267: Atu0267 - hypothetical protein, at 264,244 to 264,597
Atu0267
Atu0268: Atu0268 - hypothetical protein, at 264,609 to 264,851
Atu0268
Atu0269: Atu0269 - exodeoxyribonuclease VII large subunit, at 265,041 to 266,639
Atu0269
Atu0270: Atu0270 - mandelate racemase / muconate lactonizing enzyme family protein, at 266,640 to 267,842
Atu0270
Position (kb) 265
266
267 Strain fitness (log2 ratio) -1
0
1 at 264.062 kb on + strand, within Atu0266 at 264.114 kb on - strand, within Atu0266 at 264.125 kb on + strand, within Atu0266 at 264.133 kb on - strand, within Atu0266 at 264.133 kb on - strand, within Atu0266 at 264.151 kb on + strand at 264.321 kb on + strand, within Atu0267 at 264.377 kb on - strand, within Atu0267 at 264.411 kb on + strand, within Atu0267 at 264.434 kb on - strand, within Atu0267 at 264.443 kb on + strand, within Atu0267 at 264.591 kb on + strand at 264.606 kb on + strand at 264.614 kb on - strand at 264.777 kb on + strand, within Atu0268 at 264.777 kb on + strand, within Atu0268 at 264.789 kb on + strand, within Atu0268 at 264.789 kb on + strand, within Atu0268 at 264.794 kb on + strand, within Atu0268 at 264.795 kb on - strand, within Atu0268 at 264.795 kb on - strand, within Atu0268 at 264.814 kb on - strand, within Atu0268 at 264.815 kb on + strand, within Atu0268 at 264.822 kb on + strand, within Atu0268 at 264.886 kb on - strand at 264.950 kb on + strand at 265.045 kb on + strand at 265.073 kb on - strand at 265.289 kb on + strand, within Atu0269 at 265.363 kb on + strand, within Atu0269 at 265.476 kb on - strand, within Atu0269 at 265.954 kb on + strand, within Atu0269 at 266.137 kb on + strand, within Atu0269 at 266.189 kb on - strand, within Atu0269 at 266.196 kb on - strand, within Atu0269 at 266.334 kb on - strand, within Atu0269 at 266.336 kb on + strand, within Atu0269 at 266.339 kb on + strand, within Atu0269 at 266.349 kb on + strand, within Atu0269 at 266.349 kb on + strand, within Atu0269 at 266.349 kb on + strand, within Atu0269 at 266.386 kb on - strand, within Atu0269 at 266.546 kb on + strand at 266.549 kb on - strand at 266.605 kb on + strand at 266.641 kb on - strand at 266.717 kb on + strand at 266.760 kb on + strand at 266.775 kb on - strand, within Atu0270 at 266.791 kb on + strand, within Atu0270 at 266.865 kb on + strand, within Atu0270 at 266.907 kb on - strand, within Atu0270 at 267.070 kb on + strand, within Atu0270 at 267.095 kb on + strand, within Atu0270 at 267.138 kb on - strand, within Atu0270 at 267.159 kb on + strand, within Atu0270 at 267.187 kb on + strand, within Atu0270 at 267.189 kb on + strand, within Atu0270 at 267.195 kb on - strand, within Atu0270 at 267.324 kb on + strand, within Atu0270 at 267.329 kb on + strand, within Atu0270 at 267.335 kb on - strand, within Atu0270 at 267.371 kb on + strand, within Atu0270 at 267.371 kb on + strand, within Atu0270 at 267.379 kb on - strand, within Atu0270 at 267.403 kb on + strand, within Atu0270 at 267.403 kb on + strand, within Atu0270 at 267.425 kb on + strand, within Atu0270 at 267.484 kb on - strand, within Atu0270 at 267.485 kb on + strand, within Atu0270 at 267.491 kb on - strand, within Atu0270
Per-strain Table
Position Strand Gene LocusTag Fraction Salicylic 1.25 mM remove 264,062 + Atu0266 0.81 -0.1 264,114 - Atu0266 0.86 +0.5 264,125 + Atu0266 0.88 +0.1 264,133 - Atu0266 0.88 -0.3 264,133 - Atu0266 0.88 -0.9 264,151 + +0.7 264,321 + Atu0267 0.22 +0.0 264,377 - Atu0267 0.38 -0.2 264,411 + Atu0267 0.47 -0.1 264,434 - Atu0267 0.54 -0.5 264,443 + Atu0267 0.56 +0.2 264,591 + +0.4 264,606 + +0.2 264,614 - -0.2 264,777 + Atu0268 0.69 +0.0 264,777 + Atu0268 0.69 -0.2 264,789 + Atu0268 0.74 -0.0 264,789 + Atu0268 0.74 -0.2 264,794 + Atu0268 0.76 +0.1 264,795 - Atu0268 0.77 -0.4 264,795 - Atu0268 0.77 -0.2 264,814 - Atu0268 0.84 -0.7 264,815 + Atu0268 0.85 -0.0 264,822 + Atu0268 0.88 +0.4 264,886 - +0.1 264,950 + -0.5 265,045 + -1.3 265,073 - +0.4 265,289 + Atu0269 0.16 +0.3 265,363 + Atu0269 0.20 -0.1 265,476 - Atu0269 0.27 -0.4 265,954 + Atu0269 0.57 -0.7 266,137 + Atu0269 0.69 +0.1 266,189 - Atu0269 0.72 -0.0 266,196 - Atu0269 0.72 -0.3 266,334 - Atu0269 0.81 +0.6 266,336 + Atu0269 0.81 -0.9 266,339 + Atu0269 0.81 -0.9 266,349 + Atu0269 0.82 -0.6 266,349 + Atu0269 0.82 -0.3 266,349 + Atu0269 0.82 +0.3 266,386 - Atu0269 0.84 +0.3 266,546 + +0.6 266,549 - -0.2 266,605 + -0.4 266,641 - -0.3 266,717 + -0.4 266,760 + -0.1 266,775 - Atu0270 0.11 -0.6 266,791 + Atu0270 0.13 -0.0 266,865 + Atu0270 0.19 -0.3 266,907 - Atu0270 0.22 -0.2 267,070 + Atu0270 0.36 -0.0 267,095 + Atu0270 0.38 +1.4 267,138 - Atu0270 0.41 -0.1 267,159 + Atu0270 0.43 -0.1 267,187 + Atu0270 0.45 -0.3 267,189 + Atu0270 0.46 -1.4 267,195 - Atu0270 0.46 +0.3 267,324 + Atu0270 0.57 +0.3 267,329 + Atu0270 0.57 +0.3 267,335 - Atu0270 0.58 +1.3 267,371 + Atu0270 0.61 +0.8 267,371 + Atu0270 0.61 -0.1 267,379 - Atu0270 0.61 -0.2 267,403 + Atu0270 0.63 -0.1 267,403 + Atu0270 0.63 -0.4 267,425 + Atu0270 0.65 +0.1 267,484 - Atu0270 0.70 +0.4 267,485 + Atu0270 0.70 +0.5 267,491 - Atu0270 0.71 +0.4
Or see this region's nucleotide sequence