Experiment: Phloretic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0607 and Atu0608 are separated by 250 nucleotides Atu0608 and Atu0609 are separated by 151 nucleotides
Atu0607: Atu0607 - isocitrate lyase, at 593,283 to 594,572
Atu0607
Atu0608: Atu0608 - transcriptional regulator, at 594,823 to 596,238
Atu0608
Atu0609: Atu0609 - ABC transporter, substrate binding protein (putrescine), at 596,390 to 597,487
Atu0609
Position (kb) 594
595
596
597 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 593.999 kb on - strand, within Atu0607 at 594.082 kb on + strand, within Atu0607 at 594.107 kb on - strand, within Atu0607 at 594.149 kb on - strand, within Atu0607 at 594.159 kb on - strand, within Atu0607 at 594.172 kb on + strand, within Atu0607 at 594.172 kb on + strand, within Atu0607 at 594.172 kb on + strand, within Atu0607 at 594.172 kb on + strand, within Atu0607 at 594.177 kb on + strand, within Atu0607 at 594.180 kb on - strand, within Atu0607 at 594.180 kb on - strand, within Atu0607 at 594.226 kb on + strand, within Atu0607 at 594.231 kb on + strand, within Atu0607 at 594.269 kb on + strand, within Atu0607 at 594.277 kb on - strand, within Atu0607 at 594.292 kb on + strand, within Atu0607 at 594.300 kb on - strand, within Atu0607 at 594.300 kb on - strand, within Atu0607 at 594.336 kb on + strand, within Atu0607 at 594.380 kb on - strand, within Atu0607 at 594.502 kb on + strand at 594.510 kb on - strand at 594.520 kb on - strand at 594.712 kb on + strand at 594.715 kb on - strand at 594.730 kb on - strand at 594.730 kb on - strand at 594.740 kb on - strand at 594.873 kb on - strand at 594.975 kb on + strand, within Atu0608 at 595.060 kb on + strand, within Atu0608 at 595.067 kb on - strand, within Atu0608 at 595.097 kb on - strand, within Atu0608 at 595.118 kb on - strand, within Atu0608 at 595.183 kb on + strand, within Atu0608 at 595.193 kb on + strand, within Atu0608 at 595.202 kb on + strand, within Atu0608 at 595.235 kb on - strand, within Atu0608 at 595.237 kb on + strand, within Atu0608 at 595.242 kb on + strand, within Atu0608 at 595.245 kb on - strand, within Atu0608 at 595.333 kb on - strand, within Atu0608 at 595.412 kb on + strand, within Atu0608 at 595.418 kb on - strand, within Atu0608 at 595.487 kb on - strand, within Atu0608 at 595.532 kb on + strand, within Atu0608 at 595.659 kb on + strand, within Atu0608 at 595.659 kb on + strand, within Atu0608 at 595.659 kb on + strand, within Atu0608 at 595.659 kb on + strand, within Atu0608 at 595.756 kb on - strand, within Atu0608 at 595.784 kb on - strand, within Atu0608 at 595.901 kb on - strand, within Atu0608 at 595.903 kb on - strand, within Atu0608 at 596.015 kb on + strand, within Atu0608 at 596.029 kb on - strand, within Atu0608 at 596.029 kb on - strand, within Atu0608 at 596.049 kb on - strand, within Atu0608 at 596.107 kb on + strand at 596.146 kb on - strand at 596.196 kb on + strand at 596.274 kb on - strand at 596.314 kb on + strand at 596.415 kb on + strand at 596.423 kb on - strand at 596.428 kb on - strand at 596.437 kb on + strand at 596.449 kb on - strand at 596.464 kb on + strand at 596.464 kb on + strand at 596.467 kb on - strand at 596.472 kb on - strand at 596.503 kb on - strand, within Atu0609 at 596.561 kb on + strand, within Atu0609 at 596.579 kb on + strand, within Atu0609 at 596.620 kb on - strand, within Atu0609 at 596.620 kb on - strand, within Atu0609 at 596.688 kb on + strand, within Atu0609 at 596.712 kb on - strand, within Atu0609 at 596.818 kb on + strand, within Atu0609 at 596.818 kb on + strand, within Atu0609 at 596.826 kb on - strand, within Atu0609 at 596.927 kb on + strand, within Atu0609 at 597.043 kb on - strand, within Atu0609 at 597.164 kb on - strand, within Atu0609 at 597.178 kb on + strand, within Atu0609 at 597.204 kb on - strand, within Atu0609
Per-strain Table
Position Strand Gene LocusTag Fraction Phloretic Acid (C) remove 593,999 - Atu0607 0.56 -4.1 594,082 + Atu0607 0.62 -5.4 594,107 - Atu0607 0.64 -2.9 594,149 - Atu0607 0.67 -3.8 594,159 - Atu0607 0.68 -4.5 594,172 + Atu0607 0.69 -4.6 594,172 + Atu0607 0.69 -4.1 594,172 + Atu0607 0.69 -3.9 594,172 + Atu0607 0.69 -2.7 594,177 + Atu0607 0.69 -4.2 594,180 - Atu0607 0.70 -3.4 594,180 - Atu0607 0.70 -3.3 594,226 + Atu0607 0.73 -2.6 594,231 + Atu0607 0.73 -1.9 594,269 + Atu0607 0.76 -5.1 594,277 - Atu0607 0.77 -4.5 594,292 + Atu0607 0.78 -3.1 594,300 - Atu0607 0.79 -1.5 594,300 - Atu0607 0.79 -2.7 594,336 + Atu0607 0.82 -4.7 594,380 - Atu0607 0.85 -3.0 594,502 + -2.7 594,510 - -1.8 594,520 - -5.8 594,712 + -4.6 594,715 - -2.5 594,730 - -4.7 594,730 - -3.6 594,740 - -4.1 594,873 - -2.1 594,975 + Atu0608 0.11 -2.2 595,060 + Atu0608 0.17 -4.1 595,067 - Atu0608 0.17 -1.1 595,097 - Atu0608 0.19 -3.3 595,118 - Atu0608 0.21 -4.0 595,183 + Atu0608 0.25 -3.5 595,193 + Atu0608 0.26 -4.2 595,202 + Atu0608 0.27 -3.3 595,235 - Atu0608 0.29 -2.8 595,237 + Atu0608 0.29 -2.1 595,242 + Atu0608 0.30 -3.1 595,245 - Atu0608 0.30 +0.5 595,333 - Atu0608 0.36 -2.3 595,412 + Atu0608 0.42 -2.4 595,418 - Atu0608 0.42 -1.2 595,487 - Atu0608 0.47 -3.5 595,532 + Atu0608 0.50 -6.5 595,659 + Atu0608 0.59 -3.4 595,659 + Atu0608 0.59 -3.9 595,659 + Atu0608 0.59 -5.4 595,659 + Atu0608 0.59 -3.7 595,756 - Atu0608 0.66 -5.7 595,784 - Atu0608 0.68 -2.0 595,901 - Atu0608 0.76 -4.7 595,903 - Atu0608 0.76 -2.6 596,015 + Atu0608 0.84 -3.0 596,029 - Atu0608 0.85 -0.8 596,029 - Atu0608 0.85 -2.2 596,049 - Atu0608 0.87 -4.0 596,107 + -4.1 596,146 - -3.2 596,196 + -0.2 596,274 - +0.7 596,314 + +0.0 596,415 + -0.9 596,423 - -0.2 596,428 - -0.3 596,437 + -0.4 596,449 - +0.2 596,464 + -0.2 596,464 + +0.3 596,467 - +0.1 596,472 - -0.3 596,503 - Atu0609 0.10 -0.1 596,561 + Atu0609 0.16 -0.1 596,579 + Atu0609 0.17 -0.1 596,620 - Atu0609 0.21 +0.0 596,620 - Atu0609 0.21 -0.3 596,688 + Atu0609 0.27 -0.1 596,712 - Atu0609 0.29 -0.4 596,818 + Atu0609 0.39 -0.5 596,818 + Atu0609 0.39 +0.2 596,826 - Atu0609 0.40 -0.1 596,927 + Atu0609 0.49 +0.2 597,043 - Atu0609 0.59 +0.2 597,164 - Atu0609 0.70 -0.1 597,178 + Atu0609 0.72 -0.4 597,204 - Atu0609 0.74 -0.0
Or see this region's nucleotide sequence