Experiment: Glutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0605 and Atu0606 are separated by 15 nucleotides Atu0606 and Atu0607 are separated by 84 nucleotides Atu0607 and Atu0608 are separated by 250 nucleotides
Atu0605: Atu0605 - transcriptional regulator, LysR family, at 592,053 to 592,925
Atu0605
Atu0606: Atu0606 - hypothetical protein, at 592,941 to 593,198
Atu0606
Atu0607: Atu0607 - isocitrate lyase, at 593,283 to 594,572
Atu0607
Atu0608: Atu0608 - transcriptional regulator, at 594,823 to 596,238
Atu0608
Position (kb) 593
594
595 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 592.334 kb on + strand, within Atu0605 at 592.396 kb on - strand, within Atu0605 at 592.399 kb on + strand, within Atu0605 at 592.541 kb on + strand, within Atu0605 at 592.628 kb on - strand, within Atu0605 at 592.635 kb on + strand, within Atu0605 at 592.666 kb on + strand, within Atu0605 at 592.722 kb on + strand, within Atu0605 at 592.860 kb on + strand at 592.882 kb on - strand at 592.995 kb on + strand, within Atu0606 at 593.013 kb on + strand, within Atu0606 at 593.161 kb on + strand, within Atu0606 at 593.252 kb on + strand at 593.265 kb on - strand at 593.265 kb on - strand at 593.296 kb on + strand at 593.327 kb on - strand at 593.337 kb on + strand at 593.345 kb on - strand at 593.345 kb on - strand at 593.424 kb on + strand, within Atu0607 at 593.427 kb on - strand, within Atu0607 at 593.467 kb on - strand, within Atu0607 at 593.486 kb on + strand, within Atu0607 at 593.536 kb on - strand, within Atu0607 at 593.543 kb on + strand, within Atu0607 at 593.646 kb on + strand, within Atu0607 at 593.649 kb on - strand, within Atu0607 at 593.687 kb on - strand, within Atu0607 at 593.698 kb on - strand, within Atu0607 at 593.744 kb on + strand, within Atu0607 at 593.744 kb on + strand, within Atu0607 at 593.758 kb on + strand, within Atu0607 at 593.766 kb on - strand, within Atu0607 at 593.784 kb on + strand, within Atu0607 at 593.786 kb on + strand, within Atu0607 at 593.794 kb on - strand, within Atu0607 at 593.794 kb on - strand, within Atu0607 at 593.805 kb on - strand, within Atu0607 at 593.815 kb on - strand, within Atu0607 at 593.816 kb on - strand, within Atu0607 at 593.999 kb on - strand, within Atu0607 at 594.082 kb on + strand, within Atu0607 at 594.107 kb on - strand, within Atu0607 at 594.149 kb on - strand, within Atu0607 at 594.159 kb on - strand, within Atu0607 at 594.172 kb on + strand, within Atu0607 at 594.172 kb on + strand, within Atu0607 at 594.172 kb on + strand, within Atu0607 at 594.172 kb on + strand, within Atu0607 at 594.177 kb on + strand, within Atu0607 at 594.180 kb on - strand, within Atu0607 at 594.180 kb on - strand, within Atu0607 at 594.226 kb on + strand, within Atu0607 at 594.231 kb on + strand, within Atu0607 at 594.269 kb on + strand, within Atu0607 at 594.277 kb on - strand, within Atu0607 at 594.292 kb on + strand, within Atu0607 at 594.300 kb on - strand, within Atu0607 at 594.300 kb on - strand, within Atu0607 at 594.336 kb on + strand, within Atu0607 at 594.380 kb on - strand, within Atu0607 at 594.502 kb on + strand at 594.510 kb on - strand at 594.520 kb on - strand at 594.712 kb on + strand at 594.715 kb on - strand at 594.730 kb on - strand at 594.730 kb on - strand at 594.740 kb on - strand at 594.873 kb on - strand at 594.975 kb on + strand, within Atu0608 at 595.060 kb on + strand, within Atu0608 at 595.067 kb on - strand, within Atu0608 at 595.097 kb on - strand, within Atu0608 at 595.118 kb on - strand, within Atu0608 at 595.183 kb on + strand, within Atu0608 at 595.193 kb on + strand, within Atu0608 at 595.202 kb on + strand, within Atu0608 at 595.235 kb on - strand, within Atu0608 at 595.237 kb on + strand, within Atu0608 at 595.242 kb on + strand, within Atu0608 at 595.245 kb on - strand, within Atu0608 at 595.333 kb on - strand, within Atu0608 at 595.412 kb on + strand, within Atu0608 at 595.418 kb on - strand, within Atu0608 at 595.487 kb on - strand, within Atu0608 at 595.532 kb on + strand, within Atu0608
Per-strain Table
Position Strand Gene LocusTag Fraction Glutaric (C) remove 592,334 + Atu0605 0.32 -0.2 592,396 - Atu0605 0.39 +0.3 592,399 + Atu0605 0.40 -0.2 592,541 + Atu0605 0.56 -0.6 592,628 - Atu0605 0.66 -0.4 592,635 + Atu0605 0.67 +0.1 592,666 + Atu0605 0.70 +0.1 592,722 + Atu0605 0.77 +0.6 592,860 + -0.2 592,882 - -2.7 592,995 + Atu0606 0.21 -4.6 593,013 + Atu0606 0.28 -3.4 593,161 + Atu0606 0.85 -2.5 593,252 + -3.9 593,265 - -3.2 593,265 - -3.0 593,296 + -5.8 593,327 - -1.5 593,337 + -2.4 593,345 - -5.2 593,345 - -5.2 593,424 + Atu0607 0.11 -4.2 593,427 - Atu0607 0.11 -2.1 593,467 - Atu0607 0.14 -6.0 593,486 + Atu0607 0.16 -2.2 593,536 - Atu0607 0.20 -5.0 593,543 + Atu0607 0.20 -3.9 593,646 + Atu0607 0.28 -5.0 593,649 - Atu0607 0.28 -4.1 593,687 - Atu0607 0.31 -3.9 593,698 - Atu0607 0.32 -3.7 593,744 + Atu0607 0.36 -3.6 593,744 + Atu0607 0.36 -3.0 593,758 + Atu0607 0.37 -6.8 593,766 - Atu0607 0.37 -4.0 593,784 + Atu0607 0.39 -6.5 593,786 + Atu0607 0.39 -5.5 593,794 - Atu0607 0.40 -0.5 593,794 - Atu0607 0.40 -3.7 593,805 - Atu0607 0.40 -1.1 593,815 - Atu0607 0.41 -2.0 593,816 - Atu0607 0.41 -3.5 593,999 - Atu0607 0.56 -5.7 594,082 + Atu0607 0.62 -5.5 594,107 - Atu0607 0.64 -4.0 594,149 - Atu0607 0.67 -3.8 594,159 - Atu0607 0.68 -4.5 594,172 + Atu0607 0.69 -5.4 594,172 + Atu0607 0.69 -4.2 594,172 + Atu0607 0.69 -5.6 594,172 + Atu0607 0.69 -2.8 594,177 + Atu0607 0.69 -5.3 594,180 - Atu0607 0.70 -3.3 594,180 - Atu0607 0.70 -4.9 594,226 + Atu0607 0.73 -4.6 594,231 + Atu0607 0.73 -3.0 594,269 + Atu0607 0.76 -4.2 594,277 - Atu0607 0.77 -6.3 594,292 + Atu0607 0.78 -3.1 594,300 - Atu0607 0.79 -2.5 594,300 - Atu0607 0.79 -3.7 594,336 + Atu0607 0.82 -5.2 594,380 - Atu0607 0.85 -4.6 594,502 + -3.7 594,510 - -2.9 594,520 - -5.8 594,712 + -4.6 594,715 - -2.5 594,730 - -4.7 594,730 - -6.3 594,740 - -4.2 594,873 - -4.5 594,975 + Atu0608 0.11 -3.9 595,060 + Atu0608 0.17 -5.7 595,067 - Atu0608 0.17 -1.1 595,097 - Atu0608 0.19 -3.3 595,118 - Atu0608 0.21 -6.0 595,183 + Atu0608 0.25 -5.2 595,193 + Atu0608 0.26 -3.7 595,202 + Atu0608 0.27 -5.3 595,235 - Atu0608 0.29 -2.9 595,237 + Atu0608 0.29 -2.1 595,242 + Atu0608 0.30 -3.8 595,245 - Atu0608 0.30 +0.5 595,333 - Atu0608 0.36 -0.8 595,412 + Atu0608 0.42 -5.0 595,418 - Atu0608 0.42 -2.2 595,487 - Atu0608 0.47 -3.5 595,532 + Atu0608 0.50 -6.5
Or see this region's nucleotide sequence