Experiment: L-(+)-Erythrulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3874 and Atu3875 are separated by 13 nucleotides Atu3875 and Atu3876 are separated by 2 nucleotides Atu3876 and Atu3877 are separated by 122 nucleotides
Atu3874: Atu3874 - L-xylulose kinase, at 967,837 to 969,315
Atu3874
Atu3875: Atu3875 - aldolase, at 969,329 to 970,171
Atu3875
Atu3876: Atu3876 - glycerol-3-phosphate dehydrogenase, at 970,174 to 971,898
Atu3876
Atu3877: Atu3877 - aldo/keto reductase, at 972,021 to 973,019
Atu3877
Position (kb) 970
971
972 Strain fitness (log2 ratio) -2
-1
0
1
2 at 969.198 kb on + strand at 969.211 kb on - strand at 969.218 kb on - strand at 969.266 kb on + strand at 969.289 kb on - strand at 969.311 kb on - strand at 969.336 kb on + strand at 969.344 kb on - strand at 969.427 kb on + strand, within Atu3875 at 969.527 kb on + strand, within Atu3875 at 969.532 kb on + strand, within Atu3875 at 969.532 kb on + strand, within Atu3875 at 969.553 kb on + strand, within Atu3875 at 969.627 kb on + strand, within Atu3875 at 969.670 kb on + strand, within Atu3875 at 969.687 kb on + strand, within Atu3875 at 969.695 kb on - strand, within Atu3875 at 969.722 kb on - strand, within Atu3875 at 969.822 kb on - strand, within Atu3875 at 969.862 kb on + strand, within Atu3875 at 969.894 kb on + strand, within Atu3875 at 970.001 kb on + strand, within Atu3875 at 970.061 kb on - strand, within Atu3875 at 970.119 kb on - strand at 970.195 kb on + strand at 970.220 kb on - strand at 970.371 kb on + strand, within Atu3876 at 970.511 kb on + strand, within Atu3876 at 970.523 kb on + strand, within Atu3876 at 970.585 kb on + strand, within Atu3876 at 970.663 kb on + strand, within Atu3876 at 970.859 kb on + strand, within Atu3876 at 970.906 kb on - strand, within Atu3876 at 970.927 kb on + strand, within Atu3876 at 970.946 kb on + strand, within Atu3876 at 971.046 kb on + strand, within Atu3876 at 971.048 kb on + strand, within Atu3876 at 971.048 kb on + strand, within Atu3876 at 971.074 kb on + strand, within Atu3876 at 971.079 kb on + strand, within Atu3876 at 971.082 kb on - strand, within Atu3876 at 971.082 kb on - strand, within Atu3876 at 971.196 kb on + strand, within Atu3876 at 971.265 kb on + strand, within Atu3876 at 971.292 kb on - strand, within Atu3876 at 971.407 kb on - strand, within Atu3876 at 971.481 kb on - strand, within Atu3876 at 971.487 kb on + strand, within Atu3876 at 971.489 kb on - strand, within Atu3876 at 971.695 kb on + strand, within Atu3876 at 971.727 kb on + strand at 971.772 kb on + strand at 971.900 kb on + strand at 971.973 kb on - strand at 972.053 kb on + strand at 972.066 kb on - strand at 972.079 kb on - strand at 972.125 kb on + strand, within Atu3877 at 972.185 kb on - strand, within Atu3877 at 972.187 kb on + strand, within Atu3877 at 972.195 kb on - strand, within Atu3877 at 972.241 kb on + strand, within Atu3877 at 972.241 kb on + strand, within Atu3877 at 972.249 kb on - strand, within Atu3877 at 972.316 kb on - strand, within Atu3877 at 972.334 kb on + strand, within Atu3877 at 972.344 kb on + strand, within Atu3877 at 972.414 kb on + strand, within Atu3877 at 972.544 kb on + strand, within Atu3877 at 972.552 kb on - strand, within Atu3877 at 972.552 kb on - strand, within Atu3877 at 972.613 kb on - strand, within Atu3877 at 972.615 kb on - strand, within Atu3877 at 972.639 kb on - strand, within Atu3877 at 972.642 kb on + strand, within Atu3877 at 972.659 kb on - strand, within Atu3877 at 972.677 kb on - strand, within Atu3877 at 972.742 kb on + strand, within Atu3877 at 972.783 kb on - strand, within Atu3877 at 972.825 kb on + strand, within Atu3877 at 972.837 kb on + strand, within Atu3877 at 972.837 kb on + strand, within Atu3877 at 972.837 kb on + strand, within Atu3877
Per-strain Table
Position Strand Gene LocusTag Fraction L-(+)-Erythrulose (C) remove 969,198 + -0.2 969,211 - +0.2 969,218 - -0.1 969,266 + +0.3 969,289 - -0.3 969,311 - +0.0 969,336 + +0.9 969,344 - +0.6 969,427 + Atu3875 0.12 -0.1 969,527 + Atu3875 0.23 +0.2 969,532 + Atu3875 0.24 +0.4 969,532 + Atu3875 0.24 +2.0 969,553 + Atu3875 0.27 -0.2 969,627 + Atu3875 0.35 +0.1 969,670 + Atu3875 0.40 +0.6 969,687 + Atu3875 0.42 -1.7 969,695 - Atu3875 0.43 -0.2 969,722 - Atu3875 0.47 -0.0 969,822 - Atu3875 0.58 -0.2 969,862 + Atu3875 0.63 -1.1 969,894 + Atu3875 0.67 -0.2 970,001 + Atu3875 0.80 +0.3 970,061 - Atu3875 0.87 -0.4 970,119 - +1.0 970,195 + -1.2 970,220 - -0.1 970,371 + Atu3876 0.11 -0.9 970,511 + Atu3876 0.20 -0.8 970,523 + Atu3876 0.20 -0.6 970,585 + Atu3876 0.24 -0.8 970,663 + Atu3876 0.28 -0.9 970,859 + Atu3876 0.40 -0.3 970,906 - Atu3876 0.42 -0.6 970,927 + Atu3876 0.44 -0.9 970,946 + Atu3876 0.45 +0.4 971,046 + Atu3876 0.51 -1.9 971,048 + Atu3876 0.51 -0.8 971,048 + Atu3876 0.51 -2.0 971,074 + Atu3876 0.52 +0.1 971,079 + Atu3876 0.52 -0.4 971,082 - Atu3876 0.53 -0.8 971,082 - Atu3876 0.53 -2.1 971,196 + Atu3876 0.59 -0.1 971,265 + Atu3876 0.63 -0.4 971,292 - Atu3876 0.65 -0.4 971,407 - Atu3876 0.71 -0.4 971,481 - Atu3876 0.76 +0.3 971,487 + Atu3876 0.76 -0.5 971,489 - Atu3876 0.76 -1.4 971,695 + Atu3876 0.88 -0.8 971,727 + +0.2 971,772 + -0.4 971,900 + -0.2 971,973 - -0.1 972,053 + +0.2 972,066 - +0.2 972,079 - -0.3 972,125 + Atu3877 0.10 -0.2 972,185 - Atu3877 0.16 +0.2 972,187 + Atu3877 0.17 -1.2 972,195 - Atu3877 0.17 -0.1 972,241 + Atu3877 0.22 -0.2 972,241 + Atu3877 0.22 +0.2 972,249 - Atu3877 0.23 +0.0 972,316 - Atu3877 0.30 -0.3 972,334 + Atu3877 0.31 -0.3 972,344 + Atu3877 0.32 +0.1 972,414 + Atu3877 0.39 -0.5 972,544 + Atu3877 0.52 -0.9 972,552 - Atu3877 0.53 -0.6 972,552 - Atu3877 0.53 -0.0 972,613 - Atu3877 0.59 +0.1 972,615 - Atu3877 0.59 -0.0 972,639 - Atu3877 0.62 -0.1 972,642 + Atu3877 0.62 +0.1 972,659 - Atu3877 0.64 -0.5 972,677 - Atu3877 0.66 -0.9 972,742 + Atu3877 0.72 -0.2 972,783 - Atu3877 0.76 +0.1 972,825 + Atu3877 0.80 -0.3 972,837 + Atu3877 0.82 -0.2 972,837 + Atu3877 0.82 +0.3 972,837 + Atu3877 0.82 +0.1
Or see this region's nucleotide sequence