Experiment: L-(+)-Erythrulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3501 and Atu3502 are separated by 5 nucleotides Atu3502 and Atu3503 are separated by 3 nucleotides Atu3503 and Atu3504 are separated by 61 nucleotides
Atu3501: Atu3501 - ABC transporter permease, at 551,809 to 552,834
Atu3501
Atu3502: Atu3502 - ABC transporter permease, at 552,840 to 553,727
Atu3502
Atu3503: Atu3503 - ABC transporter permease, at 553,731 to 554,564
Atu3503
Atu3504: Atu3504 - sulfate ABC transporter substrate-binding protein, at 554,626 to 555,612
Atu3504
Position (kb) 553
554
555 Strain fitness (log2 ratio) -2
-1
0
1 at 552.954 kb on + strand, within Atu3502 at 553.016 kb on - strand, within Atu3502 at 553.024 kb on + strand, within Atu3502 at 553.090 kb on + strand, within Atu3502 at 553.103 kb on - strand, within Atu3502 at 553.108 kb on + strand, within Atu3502 at 553.108 kb on - strand, within Atu3502 at 553.190 kb on - strand, within Atu3502 at 553.211 kb on + strand, within Atu3502 at 553.367 kb on - strand, within Atu3502 at 553.410 kb on - strand, within Atu3502 at 553.481 kb on - strand, within Atu3502 at 553.506 kb on - strand, within Atu3502 at 553.563 kb on + strand, within Atu3502 at 553.571 kb on + strand, within Atu3502 at 553.579 kb on - strand, within Atu3502 at 553.579 kb on - strand, within Atu3502 at 553.623 kb on + strand, within Atu3502 at 553.707 kb on - strand at 553.742 kb on + strand at 553.744 kb on + strand at 553.752 kb on - strand at 553.752 kb on - strand at 553.866 kb on - strand, within Atu3503 at 553.976 kb on + strand, within Atu3503 at 554.140 kb on - strand, within Atu3503 at 554.154 kb on - strand, within Atu3503 at 554.157 kb on - strand, within Atu3503 at 554.159 kb on + strand, within Atu3503 at 554.159 kb on + strand, within Atu3503 at 554.320 kb on - strand, within Atu3503 at 554.341 kb on + strand, within Atu3503 at 554.443 kb on - strand, within Atu3503 at 554.457 kb on - strand, within Atu3503 at 554.504 kb on + strand at 554.504 kb on + strand at 554.512 kb on - strand at 554.512 kb on - strand at 554.532 kb on + strand at 554.740 kb on - strand, within Atu3504 at 554.819 kb on + strand, within Atu3504 at 554.827 kb on - strand, within Atu3504 at 554.827 kb on - strand, within Atu3504 at 554.913 kb on + strand, within Atu3504 at 554.931 kb on - strand, within Atu3504 at 554.933 kb on - strand, within Atu3504 at 554.990 kb on + strand, within Atu3504 at 555.028 kb on + strand, within Atu3504 at 555.034 kb on - strand, within Atu3504 at 555.060 kb on - strand, within Atu3504 at 555.131 kb on + strand, within Atu3504 at 555.163 kb on - strand, within Atu3504 at 555.176 kb on - strand, within Atu3504 at 555.239 kb on + strand, within Atu3504 at 555.247 kb on - strand, within Atu3504 at 555.247 kb on - strand, within Atu3504 at 555.278 kb on + strand, within Atu3504 at 555.332 kb on + strand, within Atu3504 at 555.369 kb on + strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.442 kb on - strand, within Atu3504 at 555.466 kb on - strand, within Atu3504 at 555.492 kb on - strand, within Atu3504 at 555.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-(+)-Erythrulose (C) remove 552,954 + Atu3502 0.13 -0.5 553,016 - Atu3502 0.20 +0.2 553,024 + Atu3502 0.21 +0.5 553,090 + Atu3502 0.28 -0.3 553,103 - Atu3502 0.30 -0.3 553,108 + Atu3502 0.30 -0.4 553,108 - Atu3502 0.30 -0.5 553,190 - Atu3502 0.39 +0.2 553,211 + Atu3502 0.42 -1.7 553,367 - Atu3502 0.59 -0.4 553,410 - Atu3502 0.64 +0.0 553,481 - Atu3502 0.72 -0.1 553,506 - Atu3502 0.75 -1.0 553,563 + Atu3502 0.81 +0.8 553,571 + Atu3502 0.82 -0.4 553,579 - Atu3502 0.83 -0.2 553,579 - Atu3502 0.83 -0.3 553,623 + Atu3502 0.88 -0.0 553,707 - -1.2 553,742 + -0.2 553,744 + -0.8 553,752 - -0.4 553,752 - +0.3 553,866 - Atu3503 0.16 -0.5 553,976 + Atu3503 0.29 +1.5 554,140 - Atu3503 0.49 -0.5 554,154 - Atu3503 0.51 +0.0 554,157 - Atu3503 0.51 -0.2 554,159 + Atu3503 0.51 +0.2 554,159 + Atu3503 0.51 -0.3 554,320 - Atu3503 0.71 +0.6 554,341 + Atu3503 0.73 +0.6 554,443 - Atu3503 0.85 +0.1 554,457 - Atu3503 0.87 +0.2 554,504 + -0.1 554,504 + -0.9 554,512 - +0.0 554,512 - -0.1 554,532 + +0.5 554,740 - Atu3504 0.12 -0.0 554,819 + Atu3504 0.20 +0.5 554,827 - Atu3504 0.20 -0.4 554,827 - Atu3504 0.20 +0.2 554,913 + Atu3504 0.29 -0.2 554,931 - Atu3504 0.31 +0.1 554,933 - Atu3504 0.31 -0.2 554,990 + Atu3504 0.37 -0.1 555,028 + Atu3504 0.41 -0.1 555,034 - Atu3504 0.41 +0.1 555,060 - Atu3504 0.44 -0.1 555,131 + Atu3504 0.51 +0.4 555,163 - Atu3504 0.54 +0.6 555,176 - Atu3504 0.56 -2.0 555,239 + Atu3504 0.62 +1.1 555,247 - Atu3504 0.63 +0.6 555,247 - Atu3504 0.63 -0.2 555,278 + Atu3504 0.66 -0.5 555,332 + Atu3504 0.72 -0.5 555,369 + Atu3504 0.75 -1.1 555,377 - Atu3504 0.76 -0.1 555,377 - Atu3504 0.76 +0.2 555,377 - Atu3504 0.76 -1.5 555,377 - Atu3504 0.76 +0.6 555,377 - Atu3504 0.76 -0.3 555,442 - Atu3504 0.83 +0.1 555,466 - Atu3504 0.85 -0.2 555,492 - Atu3504 0.88 -0.5 555,547 - -0.0
Or see this region's nucleotide sequence