Experiment: L-(+)-Erythrulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3500 and Atu3501 are separated by 15 nucleotides Atu3501 and Atu3502 are separated by 5 nucleotides Atu3502 and Atu3503 are separated by 3 nucleotides
Atu3500: Atu3500 - hypothetical protein, at 550,981 to 551,793
Atu3500
Atu3501: Atu3501 - ABC transporter permease, at 551,809 to 552,834
Atu3501
Atu3502: Atu3502 - ABC transporter permease, at 552,840 to 553,727
Atu3502
Atu3503: Atu3503 - ABC transporter permease, at 553,731 to 554,564
Atu3503
Position (kb) 551
552
553 Strain fitness (log2 ratio) -2
-1
0
1
2 at 550.811 kb on - strand at 550.862 kb on - strand at 550.865 kb on + strand at 550.947 kb on - strand at 550.995 kb on - strand at 551.031 kb on - strand at 551.176 kb on + strand, within Atu3500 at 551.176 kb on + strand, within Atu3500 at 551.179 kb on - strand, within Atu3500 at 551.225 kb on - strand, within Atu3500 at 551.392 kb on + strand, within Atu3500 at 551.400 kb on - strand, within Atu3500 at 551.400 kb on - strand, within Atu3500 at 551.436 kb on - strand, within Atu3500 at 551.471 kb on - strand, within Atu3500 at 551.490 kb on + strand, within Atu3500 at 551.533 kb on + strand, within Atu3500 at 551.533 kb on + strand, within Atu3500 at 551.681 kb on + strand, within Atu3500 at 551.689 kb on - strand, within Atu3500 at 551.707 kb on + strand, within Atu3500 at 551.715 kb on + strand at 551.715 kb on - strand at 551.735 kb on - strand at 551.774 kb on + strand at 551.814 kb on - strand at 551.950 kb on + strand, within Atu3501 at 552.088 kb on - strand, within Atu3501 at 552.126 kb on + strand, within Atu3501 at 552.152 kb on + strand, within Atu3501 at 552.205 kb on - strand, within Atu3501 at 552.205 kb on - strand, within Atu3501 at 552.215 kb on - strand, within Atu3501 at 552.215 kb on - strand, within Atu3501 at 552.380 kb on - strand, within Atu3501 at 552.405 kb on - strand, within Atu3501 at 552.448 kb on - strand, within Atu3501 at 552.483 kb on - strand, within Atu3501 at 552.954 kb on + strand, within Atu3502 at 553.016 kb on - strand, within Atu3502 at 553.024 kb on + strand, within Atu3502 at 553.090 kb on + strand, within Atu3502 at 553.103 kb on - strand, within Atu3502 at 553.108 kb on + strand, within Atu3502 at 553.108 kb on - strand, within Atu3502 at 553.190 kb on - strand, within Atu3502 at 553.211 kb on + strand, within Atu3502 at 553.367 kb on - strand, within Atu3502 at 553.410 kb on - strand, within Atu3502 at 553.481 kb on - strand, within Atu3502 at 553.506 kb on - strand, within Atu3502 at 553.563 kb on + strand, within Atu3502 at 553.571 kb on + strand, within Atu3502 at 553.579 kb on - strand, within Atu3502 at 553.579 kb on - strand, within Atu3502 at 553.623 kb on + strand, within Atu3502 at 553.707 kb on - strand at 553.742 kb on + strand at 553.744 kb on + strand at 553.752 kb on - strand at 553.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-(+)-Erythrulose (C) remove 550,811 - +0.1 550,862 - +1.1 550,865 + +0.0 550,947 - +0.4 550,995 - -0.3 551,031 - +0.1 551,176 + Atu3500 0.24 -0.5 551,176 + Atu3500 0.24 +0.1 551,179 - Atu3500 0.24 +0.1 551,225 - Atu3500 0.30 -0.2 551,392 + Atu3500 0.51 +0.6 551,400 - Atu3500 0.52 -0.2 551,400 - Atu3500 0.52 +0.1 551,436 - Atu3500 0.56 -1.0 551,471 - Atu3500 0.60 -0.4 551,490 + Atu3500 0.63 +0.2 551,533 + Atu3500 0.68 +0.4 551,533 + Atu3500 0.68 +0.0 551,681 + Atu3500 0.86 +0.3 551,689 - Atu3500 0.87 -0.3 551,707 + Atu3500 0.89 -0.1 551,715 + -0.4 551,715 - -2.4 551,735 - +0.3 551,774 + +0.1 551,814 - -0.1 551,950 + Atu3501 0.14 -0.1 552,088 - Atu3501 0.27 -0.2 552,126 + Atu3501 0.31 +0.4 552,152 + Atu3501 0.33 -0.2 552,205 - Atu3501 0.39 +1.9 552,205 - Atu3501 0.39 +0.8 552,215 - Atu3501 0.40 -0.3 552,215 - Atu3501 0.40 +0.6 552,380 - Atu3501 0.56 -0.1 552,405 - Atu3501 0.58 -0.4 552,448 - Atu3501 0.62 +0.3 552,483 - Atu3501 0.66 -0.5 552,954 + Atu3502 0.13 -0.5 553,016 - Atu3502 0.20 +0.2 553,024 + Atu3502 0.21 +0.5 553,090 + Atu3502 0.28 -0.3 553,103 - Atu3502 0.30 -0.3 553,108 + Atu3502 0.30 -0.4 553,108 - Atu3502 0.30 -0.5 553,190 - Atu3502 0.39 +0.2 553,211 + Atu3502 0.42 -1.7 553,367 - Atu3502 0.59 -0.4 553,410 - Atu3502 0.64 +0.0 553,481 - Atu3502 0.72 -0.1 553,506 - Atu3502 0.75 -1.0 553,563 + Atu3502 0.81 +0.8 553,571 + Atu3502 0.82 -0.4 553,579 - Atu3502 0.83 -0.2 553,579 - Atu3502 0.83 -0.3 553,623 + Atu3502 0.88 -0.0 553,707 - -1.2 553,742 + -0.2 553,744 + -0.8 553,752 - -0.4 553,752 - +0.3
Or see this region's nucleotide sequence