Strain Fitness in Agrobacterium fabrum C58 around Atu5548

Experiment: N-alpha-Acetyl-L-glutamate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5547 and Atu5548 are separated by 34 nucleotidesAtu5548 and Atu5549 are separated by 62 nucleotides Atu5547: Atu5547 - metallo-beta-lactamase superfamily protein, at 540,651 to 541,622 Atu5547 Atu5548: Atu5548 - hypothetical protein, at 541,657 to 542,226 Atu5548 Atu5549: Atu5549 - hypothetical protein, at 542,289 to 542,816 Atu5549 Position (kb) 541 542 543Strain fitness (log2 ratio) -1 0 1 2at 540.662 kb on - strandat 540.666 kb on + strandat 540.744 kb on + strandat 540.753 kb on - strand, within Atu5547at 540.770 kb on - strand, within Atu5547at 540.772 kb on + strand, within Atu5547at 540.799 kb on - strand, within Atu5547at 540.799 kb on - strand, within Atu5547at 540.799 kb on - strand, within Atu5547at 540.799 kb on - strand, within Atu5547at 540.832 kb on + strand, within Atu5547at 540.917 kb on + strand, within Atu5547at 540.945 kb on - strand, within Atu5547at 541.092 kb on + strand, within Atu5547at 541.133 kb on + strand, within Atu5547at 541.159 kb on - strand, within Atu5547at 541.159 kb on - strand, within Atu5547at 541.159 kb on - strand, within Atu5547at 541.159 kb on - strand, within Atu5547at 541.159 kb on - strand, within Atu5547at 541.159 kb on - strand, within Atu5547at 541.178 kb on + strand, within Atu5547at 541.186 kb on - strand, within Atu5547at 541.300 kb on - strand, within Atu5547at 541.301 kb on - strand, within Atu5547at 541.339 kb on + strand, within Atu5547at 541.415 kb on + strand, within Atu5547at 541.437 kb on + strand, within Atu5547at 541.474 kb on + strand, within Atu5547at 541.506 kb on + strand, within Atu5547at 541.508 kb on + strand, within Atu5547at 541.528 kb on + strandat 541.538 kb on - strandat 541.584 kb on - strandat 541.645 kb on - strandat 541.647 kb on + strandat 541.653 kb on - strandat 541.653 kb on - strandat 541.655 kb on - strandat 541.655 kb on - strandat 541.655 kb on - strandat 541.666 kb on + strandat 541.666 kb on + strandat 541.692 kb on - strandat 541.711 kb on + strandat 541.711 kb on + strandat 541.721 kb on + strand, within Atu5548at 541.779 kb on - strand, within Atu5548at 541.779 kb on - strand, within Atu5548at 541.826 kb on + strand, within Atu5548at 541.865 kb on + strand, within Atu5548at 541.882 kb on + strand, within Atu5548at 541.900 kb on - strand, within Atu5548at 541.918 kb on + strand, within Atu5548at 541.918 kb on + strand, within Atu5548at 541.918 kb on + strand, within Atu5548at 541.918 kb on + strand, within Atu5548at 541.918 kb on + strand, within Atu5548at 541.918 kb on + strand, within Atu5548at 541.918 kb on + strand, within Atu5548at 541.926 kb on - strand, within Atu5548at 541.926 kb on - strand, within Atu5548at 541.926 kb on - strand, within Atu5548at 541.926 kb on - strand, within Atu5548at 542.076 kb on + strand, within Atu5548at 542.080 kb on - strand, within Atu5548at 542.108 kb on + strand, within Atu5548at 542.108 kb on + strand, within Atu5548at 542.118 kb on + strand, within Atu5548at 542.160 kb on + strand, within Atu5548at 542.163 kb on - strand, within Atu5548at 542.165 kb on + strand, within Atu5548at 542.165 kb on + strand, within Atu5548at 542.173 kb on - strandat 542.248 kb on - strandat 542.255 kb on + strandat 542.257 kb on + strandat 542.257 kb on + strandat 542.263 kb on - strandat 542.278 kb on + strandat 542.294 kb on - strandat 542.294 kb on - strandat 542.328 kb on - strandat 542.346 kb on + strand, within Atu5549at 542.363 kb on + strand, within Atu5549at 542.438 kb on + strand, within Atu5549at 542.446 kb on - strand, within Atu5549at 542.470 kb on + strand, within Atu5549at 542.491 kb on - strand, within Atu5549at 542.581 kb on - strand, within Atu5549at 542.589 kb on + strand, within Atu5549at 542.618 kb on + strand, within Atu5549at 542.680 kb on - strand, within Atu5549at 542.731 kb on + strand, within Atu5549at 542.779 kb on - strandat 542.811 kb on + strandat 542.811 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N-alpha-Acetyl-L-glutamate (C)
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540,662 - +0.5
540,666 + +0.3
540,744 + +0.8
540,753 - Atu5547 0.10 +0.2
540,770 - Atu5547 0.12 +0.1
540,772 + Atu5547 0.12 +0.3
540,799 - Atu5547 0.15 -0.5
540,799 - Atu5547 0.15 +0.3
540,799 - Atu5547 0.15 -0.7
540,799 - Atu5547 0.15 +0.2
540,832 + Atu5547 0.19 +0.2
540,917 + Atu5547 0.27 +0.2
540,945 - Atu5547 0.30 +0.6
541,092 + Atu5547 0.45 -0.4
541,133 + Atu5547 0.50 -0.6
541,159 - Atu5547 0.52 -0.8
541,159 - Atu5547 0.52 +0.1
541,159 - Atu5547 0.52 +0.3
541,159 - Atu5547 0.52 -1.2
541,159 - Atu5547 0.52 +0.0
541,159 - Atu5547 0.52 +0.3
541,178 + Atu5547 0.54 +0.8
541,186 - Atu5547 0.55 +0.1
541,300 - Atu5547 0.67 +1.0
541,301 - Atu5547 0.67 +0.1
541,339 + Atu5547 0.71 -1.2
541,415 + Atu5547 0.79 +0.2
541,437 + Atu5547 0.81 -0.5
541,474 + Atu5547 0.85 -0.2
541,506 + Atu5547 0.88 +0.2
541,508 + Atu5547 0.88 +0.0
541,528 + +0.2
541,538 - +1.0
541,584 - +0.2
541,645 - +0.3
541,647 + +0.1
541,653 - +0.2
541,653 - +1.0
541,655 - -0.2
541,655 - -0.2
541,655 - -0.2
541,666 + +0.1
541,666 + +0.0
541,692 - -0.8
541,711 + +1.1
541,711 + -0.1
541,721 + Atu5548 0.11 +0.2
541,779 - Atu5548 0.21 -1.2
541,779 - Atu5548 0.21 +1.1
541,826 + Atu5548 0.30 +1.5
541,865 + Atu5548 0.36 +0.4
541,882 + Atu5548 0.39 +0.1
541,900 - Atu5548 0.43 -0.2
541,918 + Atu5548 0.46 +1.5
541,918 + Atu5548 0.46 -0.1
541,918 + Atu5548 0.46 -0.1
541,918 + Atu5548 0.46 +0.7
541,918 + Atu5548 0.46 +0.0
541,918 + Atu5548 0.46 +0.0
541,918 + Atu5548 0.46 +0.1
541,926 - Atu5548 0.47 +1.6
541,926 - Atu5548 0.47 +0.0
541,926 - Atu5548 0.47 +0.0
541,926 - Atu5548 0.47 +0.4
542,076 + Atu5548 0.74 +0.1
542,080 - Atu5548 0.74 +0.9
542,108 + Atu5548 0.79 +0.2
542,108 + Atu5548 0.79 +1.1
542,118 + Atu5548 0.81 +0.1
542,160 + Atu5548 0.88 -0.0
542,163 - Atu5548 0.89 -0.1
542,165 + Atu5548 0.89 +0.4
542,165 + Atu5548 0.89 +0.8
542,173 - +0.1
542,248 - -0.4
542,255 + -0.3
542,257 + -0.2
542,257 + -0.0
542,263 - -0.4
542,278 + +0.4
542,294 - +1.1
542,294 - -0.1
542,328 - +0.7
542,346 + Atu5549 0.11 +0.2
542,363 + Atu5549 0.14 +0.4
542,438 + Atu5549 0.28 +0.0
542,446 - Atu5549 0.30 -0.4
542,470 + Atu5549 0.34 +0.1
542,491 - Atu5549 0.38 +0.1
542,581 - Atu5549 0.55 +1.8
542,589 + Atu5549 0.57 +0.5
542,618 + Atu5549 0.62 +0.2
542,680 - Atu5549 0.74 -0.3
542,731 + Atu5549 0.84 -0.0
542,779 - +0.1
542,811 + +0.8
542,811 + +1.2

Or see this region's nucleotide sequence