Strain Fitness in Agrobacterium fabrum C58 around Atu3830

Experiment: N-alpha-Acetyl-L-glutamate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3829 and Atu3830 are separated by 90 nucleotidesAtu3830 and Atu3831 are separated by 319 nucleotides Atu3829: Atu3829 - LysR family transcriptional regulator, at 924,427 to 925,278 Atu3829 Atu3830: Atu3830 - MFS permease, at 925,369 to 926,625 Atu3830 Atu3831: Atu3831 - phage-related integrase, at 926,945 to 928,135 Atu3831 Position (kb) 925 926 927Strain fitness (log2 ratio) -2 -1 0 1 2 3at 924.418 kb on - strandat 924.507 kb on - strandat 924.538 kb on + strand, within Atu3829at 924.546 kb on - strand, within Atu3829at 924.559 kb on + strand, within Atu3829at 924.656 kb on - strand, within Atu3829at 924.735 kb on + strand, within Atu3829at 924.767 kb on + strand, within Atu3829at 924.777 kb on + strand, within Atu3829at 924.947 kb on - strand, within Atu3829at 924.962 kb on + strand, within Atu3829at 924.972 kb on + strand, within Atu3829at 924.972 kb on + strand, within Atu3829at 925.020 kb on + strand, within Atu3829at 925.054 kb on - strand, within Atu3829at 925.072 kb on + strand, within Atu3829at 925.115 kb on - strand, within Atu3829at 925.140 kb on + strand, within Atu3829at 925.181 kb on + strand, within Atu3829at 925.193 kb on + strandat 925.211 kb on - strandat 925.400 kb on + strandat 925.408 kb on - strandat 925.425 kb on + strandat 925.425 kb on + strandat 925.433 kb on - strandat 925.433 kb on - strandat 925.463 kb on + strandat 925.573 kb on + strand, within Atu3830at 925.573 kb on + strand, within Atu3830at 925.653 kb on - strand, within Atu3830at 925.666 kb on + strand, within Atu3830at 925.674 kb on - strand, within Atu3830at 925.737 kb on + strand, within Atu3830at 925.792 kb on - strand, within Atu3830at 925.800 kb on + strand, within Atu3830at 925.839 kb on + strand, within Atu3830at 925.880 kb on - strand, within Atu3830at 925.904 kb on - strand, within Atu3830at 926.069 kb on + strand, within Atu3830at 926.132 kb on + strand, within Atu3830at 926.132 kb on + strand, within Atu3830at 926.140 kb on - strand, within Atu3830at 926.140 kb on - strand, within Atu3830at 926.206 kb on + strand, within Atu3830at 926.214 kb on - strand, within Atu3830at 926.214 kb on - strand, within Atu3830at 926.214 kb on - strand, within Atu3830at 926.237 kb on - strand, within Atu3830at 926.255 kb on + strand, within Atu3830at 926.293 kb on - strand, within Atu3830at 926.398 kb on - strand, within Atu3830at 926.534 kb on + strandat 926.542 kb on - strandat 926.542 kb on - strandat 926.587 kb on + strandat 926.692 kb on + strandat 926.729 kb on - strandat 926.838 kb on - strandat 926.926 kb on + strandat 927.000 kb on - strandat 927.026 kb on - strandat 927.053 kb on + strandat 927.137 kb on - strand, within Atu3831at 927.151 kb on + strand, within Atu3831at 927.193 kb on + strand, within Atu3831at 927.273 kb on - strand, within Atu3831at 927.338 kb on - strand, within Atu3831at 927.469 kb on + strand, within Atu3831at 927.478 kb on + strand, within Atu3831at 927.484 kb on - strand, within Atu3831at 927.486 kb on - strand, within Atu3831at 927.488 kb on + strand, within Atu3831at 927.488 kb on + strand, within Atu3831at 927.562 kb on + strand, within Atu3831at 927.569 kb on + strand, within Atu3831at 927.617 kb on + strand, within Atu3831at 927.618 kb on - strand, within Atu3831at 927.618 kb on - strand, within Atu3831

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Per-strain Table

Position Strand Gene LocusTag Fraction N-alpha-Acetyl-L-glutamate (C)
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924,418 - -0.1
924,507 - -0.1
924,538 + Atu3829 0.13 -0.0
924,546 - Atu3829 0.14 +0.1
924,559 + Atu3829 0.15 +0.4
924,656 - Atu3829 0.27 +0.1
924,735 + Atu3829 0.36 +0.0
924,767 + Atu3829 0.40 +1.1
924,777 + Atu3829 0.41 +0.5
924,947 - Atu3829 0.61 +0.8
924,962 + Atu3829 0.63 +1.4
924,972 + Atu3829 0.64 -0.4
924,972 + Atu3829 0.64 +0.2
925,020 + Atu3829 0.70 +0.3
925,054 - Atu3829 0.74 +0.6
925,072 + Atu3829 0.76 +0.7
925,115 - Atu3829 0.81 +0.2
925,140 + Atu3829 0.84 +0.6
925,181 + Atu3829 0.88 -0.5
925,193 + +0.3
925,211 - +0.0
925,400 + +0.0
925,408 - -0.7
925,425 + +0.0
925,425 + -0.5
925,433 - +0.1
925,433 - +0.0
925,463 + -2.3
925,573 + Atu3830 0.16 +0.5
925,573 + Atu3830 0.16 +0.1
925,653 - Atu3830 0.23 -0.7
925,666 + Atu3830 0.24 +0.2
925,674 - Atu3830 0.24 -0.1
925,737 + Atu3830 0.29 +0.1
925,792 - Atu3830 0.34 +0.3
925,800 + Atu3830 0.34 +0.0
925,839 + Atu3830 0.37 +0.1
925,880 - Atu3830 0.41 +0.3
925,904 - Atu3830 0.43 -0.2
926,069 + Atu3830 0.56 +0.0
926,132 + Atu3830 0.61 +3.2
926,132 + Atu3830 0.61 +0.3
926,140 - Atu3830 0.61 +0.1
926,140 - Atu3830 0.61 -0.4
926,206 + Atu3830 0.67 -0.0
926,214 - Atu3830 0.67 +0.4
926,214 - Atu3830 0.67 -0.0
926,214 - Atu3830 0.67 +0.2
926,237 - Atu3830 0.69 +0.1
926,255 + Atu3830 0.70 +0.6
926,293 - Atu3830 0.74 -0.1
926,398 - Atu3830 0.82 +0.0
926,534 + -0.2
926,542 - -0.3
926,542 - -0.1
926,587 + -0.6
926,692 + -0.6
926,729 - -0.5
926,838 - +0.1
926,926 + +0.1
927,000 - -0.1
927,026 - +1.8
927,053 + +0.2
927,137 - Atu3831 0.16 +0.2
927,151 + Atu3831 0.17 -0.7
927,193 + Atu3831 0.21 +0.1
927,273 - Atu3831 0.28 +1.0
927,338 - Atu3831 0.33 -0.3
927,469 + Atu3831 0.44 -0.1
927,478 + Atu3831 0.45 +0.1
927,484 - Atu3831 0.45 +0.1
927,486 - Atu3831 0.45 +0.9
927,488 + Atu3831 0.46 -0.5
927,488 + Atu3831 0.46 -0.1
927,562 + Atu3831 0.52 -0.4
927,569 + Atu3831 0.52 -0.0
927,617 + Atu3831 0.56 -0.1
927,618 - Atu3831 0.57 +0.4
927,618 - Atu3831 0.57 -1.4

Or see this region's nucleotide sequence