Strain Fitness in Agrobacterium fabrum C58 around Atu5483

Experiment: N-alpha-Acetyl-L-glutamate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5482 and Atu5483 are separated by 207 nucleotidesAtu5483 and Atu5484 are separated by 73 nucleotides Atu5482: Atu5482 - ABC transporter substrate binding protein (amino acid), at 473,838 to 474,647 Atu5482 Atu5483: Atu5483 - GntR family transcriptional regulator, at 474,855 to 475,853 Atu5483 Atu5484: Atu5484 - hypothetical protein, at 475,927 to 476,673 Atu5484 Position (kb) 474 475 476Strain fitness (log2 ratio) -2 -1 0 1at 473.964 kb on - strand, within Atu5482at 474.014 kb on + strand, within Atu5482at 474.018 kb on - strand, within Atu5482at 474.026 kb on + strand, within Atu5482at 474.034 kb on - strand, within Atu5482at 474.034 kb on - strand, within Atu5482at 474.034 kb on - strand, within Atu5482at 474.034 kb on - strand, within Atu5482at 474.036 kb on + strand, within Atu5482at 474.036 kb on + strand, within Atu5482at 474.036 kb on + strand, within Atu5482at 474.039 kb on - strand, within Atu5482at 474.044 kb on - strand, within Atu5482at 474.044 kb on - strand, within Atu5482at 474.049 kb on - strand, within Atu5482at 474.084 kb on + strand, within Atu5482at 474.096 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.116 kb on - strand, within Atu5482at 474.116 kb on - strand, within Atu5482at 474.116 kb on - strand, within Atu5482at 474.135 kb on - strand, within Atu5482at 474.157 kb on + strand, within Atu5482at 474.157 kb on + strand, within Atu5482at 474.157 kb on + strand, within Atu5482at 474.159 kb on - strand, within Atu5482at 474.160 kb on - strand, within Atu5482at 474.165 kb on - strand, within Atu5482at 474.165 kb on - strand, within Atu5482at 474.268 kb on + strand, within Atu5482at 474.394 kb on + strand, within Atu5482at 474.411 kb on - strand, within Atu5482at 474.413 kb on - strand, within Atu5482at 474.436 kb on + strand, within Atu5482at 474.436 kb on + strand, within Atu5482at 474.463 kb on - strand, within Atu5482at 474.547 kb on - strand, within Atu5482at 474.568 kb on + strandat 474.586 kb on - strandat 474.663 kb on - strandat 474.672 kb on + strandat 474.832 kb on + strandat 475.039 kb on + strand, within Atu5483at 475.056 kb on + strand, within Atu5483at 475.066 kb on + strand, within Atu5483at 475.080 kb on - strand, within Atu5483at 475.098 kb on - strand, within Atu5483at 475.104 kb on + strand, within Atu5483at 475.112 kb on - strand, within Atu5483at 475.180 kb on + strand, within Atu5483at 475.289 kb on + strand, within Atu5483at 475.352 kb on + strand, within Atu5483at 475.367 kb on + strand, within Atu5483at 475.455 kb on + strand, within Atu5483at 475.456 kb on + strand, within Atu5483at 475.456 kb on - strand, within Atu5483at 475.494 kb on - strand, within Atu5483at 475.774 kb on + strandat 475.774 kb on + strandat 475.782 kb on - strandat 475.782 kb on - strandat 475.782 kb on - strandat 475.840 kb on - strandat 475.856 kb on + strandat 475.899 kb on + strandat 475.899 kb on + strandat 475.899 kb on + strandat 475.899 kb on + strandat 475.907 kb on - strandat 475.931 kb on + strandat 476.017 kb on + strand, within Atu5484at 476.019 kb on - strand, within Atu5484at 476.180 kb on - strand, within Atu5484at 476.185 kb on + strand, within Atu5484at 476.200 kb on + strand, within Atu5484at 476.298 kb on + strand, within Atu5484at 476.322 kb on - strand, within Atu5484at 476.359 kb on - strand, within Atu5484at 476.383 kb on + strand, within Atu5484at 476.383 kb on - strand, within Atu5484at 476.386 kb on - strand, within Atu5484at 476.424 kb on - strand, within Atu5484at 476.424 kb on - strand, within Atu5484at 476.425 kb on + strand, within Atu5484at 476.435 kb on + strand, within Atu5484at 476.435 kb on + strand, within Atu5484at 476.442 kb on + strand, within Atu5484at 476.443 kb on - strand, within Atu5484at 476.447 kb on + strand, within Atu5484at 476.447 kb on + strand, within Atu5484at 476.452 kb on + strand, within Atu5484at 476.464 kb on + strand, within Atu5484at 476.470 kb on - strand, within Atu5484at 476.544 kb on + strand, within Atu5484at 476.552 kb on - strand, within Atu5484at 476.585 kb on + strand, within Atu5484at 476.722 kb on + strandat 476.730 kb on - strandat 476.755 kb on + strandat 476.845 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N-alpha-Acetyl-L-glutamate (C)
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473,964 - Atu5482 0.16 +0.3
474,014 + Atu5482 0.22 -0.2
474,018 - Atu5482 0.22 +0.2
474,026 + Atu5482 0.23 -0.5
474,034 - Atu5482 0.24 +0.6
474,034 - Atu5482 0.24 -0.0
474,034 - Atu5482 0.24 -0.1
474,034 - Atu5482 0.24 -0.7
474,036 + Atu5482 0.24 -1.2
474,036 + Atu5482 0.24 +0.7
474,036 + Atu5482 0.24 -0.2
474,039 - Atu5482 0.25 +0.1
474,044 - Atu5482 0.25 +0.4
474,044 - Atu5482 0.25 -0.1
474,049 - Atu5482 0.26 +1.2
474,084 + Atu5482 0.30 -0.4
474,096 + Atu5482 0.32 +0.2
474,108 + Atu5482 0.33 +0.6
474,108 + Atu5482 0.33 -0.5
474,108 + Atu5482 0.33 -0.6
474,108 + Atu5482 0.33 -0.0
474,108 + Atu5482 0.33 -0.7
474,108 + Atu5482 0.33 +0.1
474,116 - Atu5482 0.34 -0.1
474,116 - Atu5482 0.34 -0.2
474,116 - Atu5482 0.34 +0.4
474,135 - Atu5482 0.37 -0.5
474,157 + Atu5482 0.39 -0.8
474,157 + Atu5482 0.39 -0.6
474,157 + Atu5482 0.39 +0.1
474,159 - Atu5482 0.40 -0.1
474,160 - Atu5482 0.40 -0.5
474,165 - Atu5482 0.40 +0.6
474,165 - Atu5482 0.40 +1.2
474,268 + Atu5482 0.53 -0.8
474,394 + Atu5482 0.69 +0.2
474,411 - Atu5482 0.71 +0.5
474,413 - Atu5482 0.71 +0.7
474,436 + Atu5482 0.74 +0.3
474,436 + Atu5482 0.74 -0.0
474,463 - Atu5482 0.77 +0.2
474,547 - Atu5482 0.88 +0.3
474,568 + +0.5
474,586 - +0.3
474,663 - -0.2
474,672 + +0.1
474,832 + +0.0
475,039 + Atu5483 0.18 +0.5
475,056 + Atu5483 0.20 +0.4
475,066 + Atu5483 0.21 +0.5
475,080 - Atu5483 0.23 -1.3
475,098 - Atu5483 0.24 +0.6
475,104 + Atu5483 0.25 +0.4
475,112 - Atu5483 0.26 +1.3
475,180 + Atu5483 0.33 +0.2
475,289 + Atu5483 0.43 +0.3
475,352 + Atu5483 0.50 +0.4
475,367 + Atu5483 0.51 +1.0
475,455 + Atu5483 0.60 +0.8
475,456 + Atu5483 0.60 +0.3
475,456 - Atu5483 0.60 +0.3
475,494 - Atu5483 0.64 +0.7
475,774 + +0.7
475,774 + +0.7
475,782 - +0.9
475,782 - +1.0
475,782 - -0.4
475,840 - +1.6
475,856 + +0.0
475,899 + -0.8
475,899 + -0.2
475,899 + -0.3
475,899 + -0.0
475,907 - -0.0
475,931 + +1.0
476,017 + Atu5484 0.12 +0.7
476,019 - Atu5484 0.12 +0.2
476,180 - Atu5484 0.34 +0.2
476,185 + Atu5484 0.35 +1.2
476,200 + Atu5484 0.37 +0.1
476,298 + Atu5484 0.50 -0.3
476,322 - Atu5484 0.53 -1.8
476,359 - Atu5484 0.58 +0.5
476,383 + Atu5484 0.61 -0.0
476,383 - Atu5484 0.61 -0.4
476,386 - Atu5484 0.61 -0.5
476,424 - Atu5484 0.67 -0.8
476,424 - Atu5484 0.67 -0.6
476,425 + Atu5484 0.67 -0.1
476,435 + Atu5484 0.68 +0.1
476,435 + Atu5484 0.68 -0.0
476,442 + Atu5484 0.69 -0.7
476,443 - Atu5484 0.69 -0.1
476,447 + Atu5484 0.70 +0.3
476,447 + Atu5484 0.70 +0.1
476,452 + Atu5484 0.70 +1.2
476,464 + Atu5484 0.72 -0.6
476,470 - Atu5484 0.73 +0.6
476,544 + Atu5484 0.83 -0.1
476,552 - Atu5484 0.84 -1.1
476,585 + Atu5484 0.88 -0.4
476,722 + -0.2
476,730 - +0.0
476,755 + +0.1
476,845 + +0.2

Or see this region's nucleotide sequence