Strain Fitness in Agrobacterium fabrum C58 around Atu0394

Experiment: N-alpha-Acetyl-L-glutamate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0392 and Atu0393 overlap by 1 nucleotidesAtu0393 and Atu0394 are separated by 42 nucleotidesAtu0394 and Atu0395 are separated by 64 nucleotides Atu0392: Atu0392 - ABC transporter, membrane spanning protein, at 385,136 to 386,062 Atu0392 Atu0393: Atu0393 - ABC transporter, membrane spanning protein, at 386,062 to 386,883 Atu0393 Atu0394: Atu0394 - ABC transporter, substrate binding protein (sugar), at 386,926 to 388,218 Atu0394 Atu0395: Atu0395 - hypothetical protein, at 388,283 to 389,083 Atu0395 Position (kb) 386 387 388 389Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 385.927 kb on + strand, within Atu0392at 385.934 kb on - strand, within Atu0392at 386.006 kb on + strandat 386.014 kb on - strandat 386.096 kb on + strandat 386.151 kb on - strand, within Atu0393at 386.192 kb on + strand, within Atu0393at 386.284 kb on - strand, within Atu0393at 386.333 kb on + strand, within Atu0393at 386.339 kb on - strand, within Atu0393at 386.505 kb on - strand, within Atu0393at 386.676 kb on - strand, within Atu0393at 386.677 kb on + strand, within Atu0393at 386.769 kb on + strand, within Atu0393at 386.815 kb on + strandat 386.858 kb on + strandat 386.866 kb on - strandat 386.888 kb on + strandat 386.955 kb on - strandat 386.957 kb on + strandat 386.965 kb on - strandat 387.092 kb on + strand, within Atu0394at 387.150 kb on - strand, within Atu0394at 387.154 kb on + strand, within Atu0394at 387.225 kb on + strand, within Atu0394at 387.228 kb on - strand, within Atu0394at 387.233 kb on + strand, within Atu0394at 387.233 kb on + strand, within Atu0394at 387.233 kb on + strand, within Atu0394at 387.241 kb on - strand, within Atu0394at 387.241 kb on - strand, within Atu0394at 387.279 kb on + strand, within Atu0394at 387.325 kb on - strand, within Atu0394at 387.420 kb on + strand, within Atu0394at 387.428 kb on - strand, within Atu0394at 387.428 kb on - strand, within Atu0394at 387.455 kb on + strand, within Atu0394at 387.455 kb on + strand, within Atu0394at 387.544 kb on - strand, within Atu0394at 387.548 kb on + strand, within Atu0394at 387.579 kb on - strand, within Atu0394at 387.600 kb on + strand, within Atu0394at 387.700 kb on - strand, within Atu0394at 387.703 kb on - strand, within Atu0394at 387.714 kb on - strand, within Atu0394at 387.724 kb on + strand, within Atu0394at 387.724 kb on + strand, within Atu0394at 387.727 kb on - strand, within Atu0394at 387.732 kb on - strand, within Atu0394at 387.741 kb on - strand, within Atu0394at 387.852 kb on - strand, within Atu0394at 387.881 kb on - strand, within Atu0394at 387.947 kb on + strand, within Atu0394at 387.997 kb on + strand, within Atu0394at 388.015 kb on + strand, within Atu0394at 388.046 kb on - strand, within Atu0394at 388.144 kb on + strandat 388.152 kb on + strandat 388.192 kb on + strandat 388.197 kb on + strandat 388.197 kb on + strandat 388.197 kb on + strandat 388.205 kb on - strandat 388.205 kb on - strandat 388.205 kb on - strandat 388.448 kb on + strand, within Atu0395at 388.455 kb on + strand, within Atu0395at 388.578 kb on + strand, within Atu0395at 388.578 kb on + strand, within Atu0395at 388.583 kb on + strand, within Atu0395at 388.583 kb on + strand, within Atu0395at 388.583 kb on + strand, within Atu0395at 388.586 kb on - strand, within Atu0395at 388.640 kb on - strand, within Atu0395at 388.684 kb on + strand, within Atu0395at 388.704 kb on - strand, within Atu0395at 388.719 kb on + strand, within Atu0395at 388.750 kb on + strand, within Atu0395at 388.823 kb on + strand, within Atu0395at 388.833 kb on + strand, within Atu0395at 388.861 kb on - strand, within Atu0395at 388.898 kb on + strand, within Atu0395at 388.910 kb on + strand, within Atu0395at 388.915 kb on + strand, within Atu0395at 388.918 kb on - strand, within Atu0395at 388.923 kb on - strand, within Atu0395at 388.945 kb on - strand, within Atu0395at 388.959 kb on - strand, within Atu0395at 388.971 kb on - strand, within Atu0395at 389.006 kb on - strandat 389.030 kb on - strandat 389.073 kb on - strandat 389.083 kb on - strandat 389.169 kb on + strandat 389.187 kb on - strandat 389.189 kb on + strandat 389.196 kb on + strandat 389.205 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N-alpha-Acetyl-L-glutamate (C)
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385,927 + Atu0392 0.85 -1.2
385,934 - Atu0392 0.86 -0.2
386,006 + +0.5
386,014 - -0.1
386,096 + -0.4
386,151 - Atu0393 0.11 -0.6
386,192 + Atu0393 0.16 +0.0
386,284 - Atu0393 0.27 +0.4
386,333 + Atu0393 0.33 +0.2
386,339 - Atu0393 0.34 -0.5
386,505 - Atu0393 0.54 +0.1
386,676 - Atu0393 0.75 +0.5
386,677 + Atu0393 0.75 -0.6
386,769 + Atu0393 0.86 -0.5
386,815 + +0.4
386,858 + +0.0
386,866 - -0.4
386,888 + -0.2
386,955 - -0.1
386,957 + -0.8
386,965 - -0.2
387,092 + Atu0394 0.13 +0.2
387,150 - Atu0394 0.17 -0.1
387,154 + Atu0394 0.18 -0.1
387,225 + Atu0394 0.23 -0.4
387,228 - Atu0394 0.23 +0.8
387,233 + Atu0394 0.24 +0.5
387,233 + Atu0394 0.24 +0.2
387,233 + Atu0394 0.24 +0.3
387,241 - Atu0394 0.24 +1.2
387,241 - Atu0394 0.24 +0.3
387,279 + Atu0394 0.27 -0.4
387,325 - Atu0394 0.31 +0.3
387,420 + Atu0394 0.38 -0.3
387,428 - Atu0394 0.39 -0.7
387,428 - Atu0394 0.39 -0.1
387,455 + Atu0394 0.41 -0.1
387,455 + Atu0394 0.41 +5.9
387,544 - Atu0394 0.48 -0.7
387,548 + Atu0394 0.48 -0.9
387,579 - Atu0394 0.51 +0.5
387,600 + Atu0394 0.52 +0.1
387,700 - Atu0394 0.60 -0.3
387,703 - Atu0394 0.60 -0.4
387,714 - Atu0394 0.61 +0.1
387,724 + Atu0394 0.62 -0.5
387,724 + Atu0394 0.62 +0.5
387,727 - Atu0394 0.62 -0.2
387,732 - Atu0394 0.62 +0.7
387,741 - Atu0394 0.63 +0.1
387,852 - Atu0394 0.72 -0.4
387,881 - Atu0394 0.74 -0.2
387,947 + Atu0394 0.79 +0.1
387,997 + Atu0394 0.83 +0.2
388,015 + Atu0394 0.84 -0.3
388,046 - Atu0394 0.87 +0.7
388,144 + +0.4
388,152 + -1.3
388,192 + -0.3
388,197 + -0.2
388,197 + -0.5
388,197 + -0.1
388,205 - -0.1
388,205 - +1.4
388,205 - -0.3
388,448 + Atu0395 0.21 -0.0
388,455 + Atu0395 0.21 -2.1
388,578 + Atu0395 0.37 +1.5
388,578 + Atu0395 0.37 -0.1
388,583 + Atu0395 0.37 -0.6
388,583 + Atu0395 0.37 +0.0
388,583 + Atu0395 0.37 +0.3
388,586 - Atu0395 0.38 -0.1
388,640 - Atu0395 0.45 -0.9
388,684 + Atu0395 0.50 +0.6
388,704 - Atu0395 0.53 -0.1
388,719 + Atu0395 0.54 +0.6
388,750 + Atu0395 0.58 -0.2
388,823 + Atu0395 0.67 +0.1
388,833 + Atu0395 0.69 -0.0
388,861 - Atu0395 0.72 +0.5
388,898 + Atu0395 0.77 -0.9
388,910 + Atu0395 0.78 +1.2
388,915 + Atu0395 0.79 -0.1
388,918 - Atu0395 0.79 -0.3
388,923 - Atu0395 0.80 -2.7
388,945 - Atu0395 0.83 -0.1
388,959 - Atu0395 0.84 -0.5
388,971 - Atu0395 0.86 +0.1
389,006 - +0.1
389,030 - +1.1
389,073 - +0.7
389,083 - +0.2
389,169 + +0.1
389,187 - +0.4
389,189 + -0.0
389,196 + +0.1
389,205 - -2.0

Or see this region's nucleotide sequence