Experiment: Dihydroxyacetone (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3892 and Atu3893 are separated by 2 nucleotides Atu3893 and Atu3894 are separated by 3 nucleotides Atu3894 and Atu3895 are separated by 2 nucleotides
Atu3892: Atu3892 - hypothetical protein, at 987,992 to 988,285
Atu3892
Atu3893: Atu3893 - sugarl ABC transporter permease, at 988,288 to 989,202
Atu3893
Atu3894: Atu3894 - sugar ABC transporter permease, at 989,206 to 990,072
Atu3894
Atu3895: Atu3895 - sugar ABC transporter ATPase, at 990,075 to 991,145
Atu3895
Position (kb) 989
990
991 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 988.247 kb on + strand, within Atu3892 at 988.255 kb on - strand, within Atu3892 at 988.287 kb on + strand at 988.294 kb on - strand at 988.294 kb on - strand at 988.317 kb on - strand at 988.389 kb on + strand, within Atu3893 at 988.397 kb on - strand, within Atu3893 at 988.416 kb on + strand, within Atu3893 at 988.490 kb on + strand, within Atu3893 at 988.671 kb on + strand, within Atu3893 at 988.708 kb on - strand, within Atu3893 at 988.761 kb on + strand, within Atu3893 at 988.828 kb on + strand, within Atu3893 at 988.828 kb on + strand, within Atu3893 at 988.870 kb on + strand, within Atu3893 at 988.904 kb on + strand, within Atu3893 at 988.924 kb on + strand, within Atu3893 at 988.950 kb on - strand, within Atu3893 at 988.950 kb on - strand, within Atu3893 at 988.973 kb on + strand, within Atu3893 at 989.050 kb on + strand, within Atu3893 at 989.051 kb on + strand, within Atu3893 at 989.105 kb on + strand, within Atu3893 at 989.114 kb on + strand at 989.123 kb on + strand at 989.124 kb on + strand at 989.125 kb on + strand at 989.130 kb on + strand at 989.187 kb on + strand at 989.195 kb on - strand at 989.195 kb on - strand at 989.202 kb on + strand at 989.232 kb on + strand at 989.235 kb on - strand at 989.237 kb on + strand at 989.237 kb on + strand at 989.240 kb on - strand at 989.245 kb on - strand at 989.246 kb on + strand at 989.247 kb on + strand at 989.247 kb on - strand at 989.252 kb on + strand at 989.252 kb on + strand at 989.314 kb on - strand, within Atu3894 at 989.314 kb on - strand, within Atu3894 at 989.353 kb on - strand, within Atu3894 at 989.362 kb on - strand, within Atu3894 at 989.362 kb on - strand, within Atu3894 at 989.385 kb on + strand, within Atu3894 at 989.416 kb on + strand, within Atu3894 at 989.477 kb on + strand, within Atu3894 at 989.477 kb on + strand, within Atu3894 at 989.485 kb on - strand, within Atu3894 at 989.577 kb on + strand, within Atu3894 at 989.595 kb on - strand, within Atu3894 at 989.595 kb on - strand, within Atu3894 at 989.644 kb on + strand, within Atu3894 at 989.742 kb on - strand, within Atu3894 at 989.750 kb on + strand, within Atu3894 at 989.892 kb on + strand, within Atu3894 at 989.899 kb on + strand, within Atu3894 at 989.959 kb on + strand, within Atu3894 at 989.959 kb on + strand, within Atu3894 at 989.967 kb on - strand, within Atu3894 at 989.967 kb on - strand, within Atu3894 at 989.967 kb on - strand, within Atu3894 at 990.087 kb on - strand at 990.189 kb on + strand, within Atu3895 at 990.217 kb on + strand, within Atu3895 at 990.330 kb on - strand, within Atu3895 at 990.353 kb on + strand, within Atu3895 at 990.501 kb on + strand, within Atu3895 at 990.531 kb on - strand, within Atu3895 at 990.536 kb on - strand, within Atu3895 at 990.536 kb on - strand, within Atu3895 at 990.536 kb on - strand, within Atu3895 at 990.541 kb on + strand, within Atu3895 at 990.551 kb on + strand, within Atu3895 at 990.553 kb on - strand, within Atu3895 at 990.556 kb on + strand, within Atu3895 at 990.559 kb on - strand, within Atu3895 at 990.592 kb on + strand, within Atu3895 at 990.593 kb on - strand, within Atu3895 at 990.594 kb on + strand, within Atu3895 at 990.600 kb on - strand, within Atu3895 at 990.672 kb on - strand, within Atu3895 at 990.711 kb on - strand, within Atu3895 at 990.741 kb on + strand, within Atu3895 at 990.828 kb on - strand, within Atu3895 at 990.882 kb on - strand, within Atu3895 at 990.890 kb on + strand, within Atu3895 at 990.896 kb on - strand, within Atu3895 at 990.956 kb on + strand, within Atu3895 at 990.964 kb on - strand, within Atu3895 at 990.966 kb on + strand, within Atu3895 at 991.000 kb on + strand, within Atu3895 at 991.018 kb on + strand, within Atu3895 at 991.026 kb on - strand, within Atu3895 at 991.046 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dihydroxyacetone (C) remove 988,247 + Atu3892 0.87 -0.9 988,255 - Atu3892 0.89 -1.0 988,287 + -0.8 988,294 - -0.0 988,294 - +3.2 988,317 - +0.2 988,389 + Atu3893 0.11 -0.4 988,397 - Atu3893 0.12 -0.4 988,416 + Atu3893 0.14 -1.7 988,490 + Atu3893 0.22 -0.4 988,671 + Atu3893 0.42 -0.4 988,708 - Atu3893 0.46 -0.3 988,761 + Atu3893 0.52 -1.0 988,828 + Atu3893 0.59 -1.3 988,828 + Atu3893 0.59 -1.4 988,870 + Atu3893 0.64 +0.3 988,904 + Atu3893 0.67 -1.6 988,924 + Atu3893 0.70 -1.2 988,950 - Atu3893 0.72 -0.4 988,950 - Atu3893 0.72 -1.1 988,973 + Atu3893 0.75 -1.5 989,050 + Atu3893 0.83 -1.2 989,051 + Atu3893 0.83 -0.8 989,105 + Atu3893 0.89 -0.6 989,114 + -1.6 989,123 + -1.1 989,124 + -0.9 989,125 + -0.7 989,130 + -2.8 989,187 + -0.8 989,195 - -1.3 989,195 - -0.5 989,202 + -1.1 989,232 + -1.1 989,235 - +0.4 989,237 + -1.5 989,237 + -0.2 989,240 - -0.6 989,245 - +1.0 989,246 + -2.1 989,247 + +0.8 989,247 - -0.6 989,252 + -0.4 989,252 + -0.7 989,314 - Atu3894 0.12 -0.9 989,314 - Atu3894 0.12 -0.7 989,353 - Atu3894 0.17 -1.2 989,362 - Atu3894 0.18 -0.5 989,362 - Atu3894 0.18 -0.8 989,385 + Atu3894 0.21 +0.2 989,416 + Atu3894 0.24 -0.5 989,477 + Atu3894 0.31 -0.6 989,477 + Atu3894 0.31 -1.7 989,485 - Atu3894 0.32 +0.6 989,577 + Atu3894 0.43 -0.9 989,595 - Atu3894 0.45 -0.8 989,595 - Atu3894 0.45 -2.0 989,644 + Atu3894 0.51 -0.9 989,742 - Atu3894 0.62 -0.8 989,750 + Atu3894 0.63 -0.2 989,892 + Atu3894 0.79 -1.1 989,899 + Atu3894 0.80 -1.2 989,959 + Atu3894 0.87 -0.9 989,959 + Atu3894 0.87 -0.8 989,967 - Atu3894 0.88 +0.5 989,967 - Atu3894 0.88 -1.1 989,967 - Atu3894 0.88 -1.4 990,087 - +0.7 990,189 + Atu3895 0.11 -0.6 990,217 + Atu3895 0.13 -0.5 990,330 - Atu3895 0.24 -0.9 990,353 + Atu3895 0.26 -0.7 990,501 + Atu3895 0.40 -1.1 990,531 - Atu3895 0.43 -1.1 990,536 - Atu3895 0.43 -1.1 990,536 - Atu3895 0.43 -0.1 990,536 - Atu3895 0.43 -1.2 990,541 + Atu3895 0.44 -0.8 990,551 + Atu3895 0.44 -0.4 990,553 - Atu3895 0.45 -1.5 990,556 + Atu3895 0.45 -0.8 990,559 - Atu3895 0.45 -1.8 990,592 + Atu3895 0.48 +0.4 990,593 - Atu3895 0.48 -0.6 990,594 + Atu3895 0.48 -0.3 990,600 - Atu3895 0.49 -0.8 990,672 - Atu3895 0.56 -1.3 990,711 - Atu3895 0.59 -1.4 990,741 + Atu3895 0.62 -0.7 990,828 - Atu3895 0.70 -2.2 990,882 - Atu3895 0.75 -0.9 990,890 + Atu3895 0.76 +0.4 990,896 - Atu3895 0.77 -1.0 990,956 + Atu3895 0.82 -1.4 990,964 - Atu3895 0.83 -1.1 990,966 + Atu3895 0.83 -0.2 991,000 + Atu3895 0.86 -1.2 991,018 + Atu3895 0.88 -1.0 991,026 - Atu3895 0.89 -1.0 991,046 + -1.3
Or see this region's nucleotide sequence