Strain Fitness in Agrobacterium fabrum C58 around Atu5132

Experiment: 1,5-Pentanediol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5130 and Atu5131 are separated by 124 nucleotidesAtu5131 and Atu5132 overlap by 4 nucleotidesAtu5132 and Atu5133 overlap by 4 nucleotides Atu5130: Atu5130 - attachment protein, at 137,164 to 137,454 Atu5130 Atu5131: Atu5131 - ABC transporter nucleotide binding/ATPase, at 137,579 to 138,373 Atu5131 Atu5132: Atu5132 - ABC transporter membrane spanning protein, at 138,370 to 139,632 Atu5132 Atu5133: Atu5133 - hypothetical protein, at 139,629 to 140,777 Atu5133 Position (kb) 138 139 140Strain fitness (log2 ratio) -2 -1 0 1 2at 137.398 kb on + strand, within Atu5130at 137.413 kb on - strand, within Atu5130at 137.457 kb on - strandat 137.464 kb on + strandat 137.480 kb on - strandat 137.536 kb on + strandat 137.536 kb on + strandat 137.538 kb on + strandat 137.566 kb on - strandat 137.622 kb on + strandat 137.622 kb on + strandat 137.630 kb on - strandat 137.630 kb on - strandat 137.630 kb on - strandat 137.664 kb on + strand, within Atu5131at 137.719 kb on - strand, within Atu5131at 137.774 kb on + strand, within Atu5131at 137.782 kb on - strand, within Atu5131at 137.784 kb on + strand, within Atu5131at 137.815 kb on - strand, within Atu5131at 137.822 kb on - strand, within Atu5131at 137.881 kb on - strand, within Atu5131at 137.882 kb on - strand, within Atu5131at 137.980 kb on - strand, within Atu5131at 137.987 kb on - strand, within Atu5131at 138.054 kb on + strand, within Atu5131at 138.120 kb on + strand, within Atu5131at 138.120 kb on + strand, within Atu5131at 138.128 kb on - strand, within Atu5131at 138.133 kb on + strand, within Atu5131at 138.173 kb on - strand, within Atu5131at 138.188 kb on + strand, within Atu5131at 138.196 kb on - strand, within Atu5131at 138.278 kb on + strand, within Atu5131at 138.283 kb on + strand, within Atu5131at 138.283 kb on + strand, within Atu5131at 138.283 kb on + strand, within Atu5131at 138.291 kb on - strand, within Atu5131at 138.396 kb on + strandat 138.468 kb on + strandat 138.468 kb on + strandat 138.476 kb on - strandat 138.508 kb on + strand, within Atu5132at 138.516 kb on - strand, within Atu5132at 138.516 kb on - strand, within Atu5132at 138.516 kb on - strand, within Atu5132at 138.524 kb on + strand, within Atu5132at 138.531 kb on - strand, within Atu5132at 138.654 kb on + strand, within Atu5132at 138.674 kb on + strand, within Atu5132at 138.683 kb on + strand, within Atu5132at 138.710 kb on + strand, within Atu5132at 138.718 kb on - strand, within Atu5132at 138.728 kb on + strand, within Atu5132at 138.728 kb on + strand, within Atu5132at 138.738 kb on + strand, within Atu5132at 138.747 kb on + strand, within Atu5132at 138.765 kb on - strand, within Atu5132at 138.788 kb on - strand, within Atu5132at 138.815 kb on + strand, within Atu5132at 138.823 kb on - strand, within Atu5132at 138.823 kb on - strand, within Atu5132at 138.834 kb on + strand, within Atu5132at 138.839 kb on + strand, within Atu5132at 138.847 kb on - strand, within Atu5132at 138.969 kb on + strand, within Atu5132at 138.974 kb on + strand, within Atu5132at 138.996 kb on + strand, within Atu5132at 139.034 kb on + strand, within Atu5132at 139.132 kb on + strand, within Atu5132at 139.137 kb on + strand, within Atu5132at 139.137 kb on + strand, within Atu5132at 139.137 kb on + strand, within Atu5132at 139.137 kb on + strand, within Atu5132at 139.145 kb on - strand, within Atu5132at 139.145 kb on - strand, within Atu5132at 139.150 kb on - strand, within Atu5132at 139.160 kb on + strand, within Atu5132at 139.170 kb on - strand, within Atu5132at 139.218 kb on + strand, within Atu5132at 139.218 kb on + strand, within Atu5132at 139.226 kb on - strand, within Atu5132at 139.226 kb on - strand, within Atu5132at 139.226 kb on - strand, within Atu5132at 139.226 kb on - strand, within Atu5132at 139.226 kb on - strand, within Atu5132at 139.275 kb on - strand, within Atu5132at 139.298 kb on + strand, within Atu5132at 139.374 kb on + strand, within Atu5132at 139.394 kb on + strand, within Atu5132at 139.432 kb on - strand, within Atu5132at 139.432 kb on - strand, within Atu5132at 139.442 kb on - strand, within Atu5132at 139.442 kb on - strand, within Atu5132at 139.506 kb on + strandat 139.605 kb on + strandat 139.625 kb on + strandat 139.633 kb on - strandat 139.648 kb on + strandat 139.782 kb on + strand, within Atu5133at 139.809 kb on - strand, within Atu5133at 139.826 kb on + strand, within Atu5133at 139.834 kb on - strand, within Atu5133at 139.834 kb on - strand, within Atu5133at 139.858 kb on - strand, within Atu5133at 139.858 kb on - strand, within Atu5133at 139.858 kb on - strand, within Atu5133at 139.858 kb on - strand, within Atu5133at 139.858 kb on - strand, within Atu5133at 139.907 kb on - strand, within Atu5133at 140.044 kb on + strand, within Atu5133at 140.063 kb on + strand, within Atu5133at 140.069 kb on - strand, within Atu5133at 140.082 kb on + strand, within Atu5133at 140.116 kb on + strand, within Atu5133at 140.204 kb on - strand, within Atu5133at 140.204 kb on - strand, within Atu5133at 140.204 kb on - strand, within Atu5133at 140.204 kb on - strand, within Atu5133at 140.276 kb on + strand, within Atu5133at 140.286 kb on + strand, within Atu5133at 140.297 kb on + strand, within Atu5133at 140.305 kb on - strand, within Atu5133at 140.321 kb on + strand, within Atu5133at 140.388 kb on - strand, within Atu5133at 140.432 kb on + strand, within Atu5133at 140.440 kb on - strand, within Atu5133at 140.510 kb on + strand, within Atu5133at 140.572 kb on + strand, within Atu5133at 140.580 kb on - strand, within Atu5133at 140.582 kb on + strand, within Atu5133at 140.582 kb on + strand, within Atu5133at 140.590 kb on - strand, within Atu5133at 140.608 kb on + strand, within Atu5133

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Per-strain Table

Position Strand Gene LocusTag Fraction 1,5-Pentanediol (C)
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137,398 + Atu5130 0.80 +0.3
137,413 - Atu5130 0.86 +0.5
137,457 - +0.1
137,464 + +0.0
137,480 - -0.2
137,536 + +0.3
137,536 + +0.3
137,538 + -0.0
137,566 - -0.5
137,622 + -0.1
137,622 + +0.0
137,630 - -0.3
137,630 - +0.0
137,630 - +0.2
137,664 + Atu5131 0.11 -0.0
137,719 - Atu5131 0.18 -0.5
137,774 + Atu5131 0.25 -0.1
137,782 - Atu5131 0.26 +1.3
137,784 + Atu5131 0.26 -1.2
137,815 - Atu5131 0.30 +0.5
137,822 - Atu5131 0.31 -0.3
137,881 - Atu5131 0.38 -0.3
137,882 - Atu5131 0.38 -1.2
137,980 - Atu5131 0.50 -0.7
137,987 - Atu5131 0.51 +0.2
138,054 + Atu5131 0.60 +0.2
138,120 + Atu5131 0.68 +0.4
138,120 + Atu5131 0.68 +0.2
138,128 - Atu5131 0.69 -0.2
138,133 + Atu5131 0.70 -0.2
138,173 - Atu5131 0.75 +1.2
138,188 + Atu5131 0.77 +0.2
138,196 - Atu5131 0.78 +0.4
138,278 + Atu5131 0.88 +0.3
138,283 + Atu5131 0.89 +0.2
138,283 + Atu5131 0.89 +0.9
138,283 + Atu5131 0.89 -0.4
138,291 - Atu5131 0.90 -0.3
138,396 + -0.2
138,468 + +0.1
138,468 + +0.7
138,476 - +0.0
138,508 + Atu5132 0.11 -0.8
138,516 - Atu5132 0.12 +0.8
138,516 - Atu5132 0.12 -0.2
138,516 - Atu5132 0.12 +0.9
138,524 + Atu5132 0.12 -0.4
138,531 - Atu5132 0.13 -0.1
138,654 + Atu5132 0.22 -0.8
138,674 + Atu5132 0.24 -0.3
138,683 + Atu5132 0.25 +0.1
138,710 + Atu5132 0.27 +0.4
138,718 - Atu5132 0.28 -0.4
138,728 + Atu5132 0.28 +0.3
138,728 + Atu5132 0.28 +0.1
138,738 + Atu5132 0.29 +0.5
138,747 + Atu5132 0.30 +0.6
138,765 - Atu5132 0.31 -0.7
138,788 - Atu5132 0.33 +0.2
138,815 + Atu5132 0.35 +0.3
138,823 - Atu5132 0.36 +0.1
138,823 - Atu5132 0.36 -0.2
138,834 + Atu5132 0.37 +0.0
138,839 + Atu5132 0.37 -0.6
138,847 - Atu5132 0.38 +0.0
138,969 + Atu5132 0.47 +0.0
138,974 + Atu5132 0.48 -0.1
138,996 + Atu5132 0.50 -0.0
139,034 + Atu5132 0.53 +0.7
139,132 + Atu5132 0.60 -0.0
139,137 + Atu5132 0.61 -0.2
139,137 + Atu5132 0.61 +0.6
139,137 + Atu5132 0.61 -0.1
139,137 + Atu5132 0.61 -0.3
139,145 - Atu5132 0.61 +0.6
139,145 - Atu5132 0.61 -0.0
139,150 - Atu5132 0.62 +0.8
139,160 + Atu5132 0.63 +0.3
139,170 - Atu5132 0.63 -0.1
139,218 + Atu5132 0.67 -0.3
139,218 + Atu5132 0.67 -0.2
139,226 - Atu5132 0.68 -0.5
139,226 - Atu5132 0.68 +0.2
139,226 - Atu5132 0.68 +0.8
139,226 - Atu5132 0.68 -0.1
139,226 - Atu5132 0.68 -0.0
139,275 - Atu5132 0.72 +0.1
139,298 + Atu5132 0.73 +0.2
139,374 + Atu5132 0.79 -0.1
139,394 + Atu5132 0.81 +0.4
139,432 - Atu5132 0.84 +0.4
139,432 - Atu5132 0.84 -0.3
139,442 - Atu5132 0.85 -0.3
139,442 - Atu5132 0.85 +0.2
139,506 + -0.8
139,605 + +0.1
139,625 + +0.5
139,633 - +0.2
139,648 + +0.1
139,782 + Atu5133 0.13 +0.1
139,809 - Atu5133 0.16 +0.3
139,826 + Atu5133 0.17 +0.6
139,834 - Atu5133 0.18 +0.0
139,834 - Atu5133 0.18 +0.4
139,858 - Atu5133 0.20 +0.2
139,858 - Atu5133 0.20 +0.1
139,858 - Atu5133 0.20 +0.6
139,858 - Atu5133 0.20 -0.1
139,858 - Atu5133 0.20 +0.5
139,907 - Atu5133 0.24 -0.2
140,044 + Atu5133 0.36 +0.8
140,063 + Atu5133 0.38 -0.4
140,069 - Atu5133 0.38 -1.8
140,082 + Atu5133 0.39 -0.1
140,116 + Atu5133 0.42 -0.1
140,204 - Atu5133 0.50 -0.1
140,204 - Atu5133 0.50 -0.2
140,204 - Atu5133 0.50 +0.4
140,204 - Atu5133 0.50 +0.4
140,276 + Atu5133 0.56 +0.4
140,286 + Atu5133 0.57 +0.8
140,297 + Atu5133 0.58 -0.6
140,305 - Atu5133 0.59 +0.3
140,321 + Atu5133 0.60 -0.6
140,388 - Atu5133 0.66 +0.2
140,432 + Atu5133 0.70 -0.3
140,440 - Atu5133 0.71 -0.3
140,510 + Atu5133 0.77 +1.6
140,572 + Atu5133 0.82 +2.5
140,580 - Atu5133 0.83 +0.6
140,582 + Atu5133 0.83 +0.5
140,582 + Atu5133 0.83 +0.4
140,590 - Atu5133 0.84 -0.8
140,608 + Atu5133 0.85 +0.5

Or see this region's nucleotide sequence