Strain Fitness in Agrobacterium fabrum C58 around Atu0207

Experiment: Beta-alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0205 and Atu0206 are separated by 111 nucleotidesAtu0206 and Atu0207 overlap by 4 nucleotidesAtu0207 and Atu0208 are separated by 206 nucleotides Atu0205: Atu0205 - methylmalonate-semialdehyde dehydrogenase, at 209,585 to 211,141 Atu0205 Atu0206: Atu0206 - hypothetical protein, at 211,253 to 211,570 Atu0206 Atu0207: Atu0207 - transcriptional regulator, LysR family, at 211,567 to 212,448 Atu0207 Atu0208: Atu0208 - hypothetical protein, at 212,655 to 213,491 Atu0208 Position (kb) 211 212 213Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 210.569 kb on - strand, within Atu0205at 210.587 kb on + strand, within Atu0205at 210.595 kb on - strand, within Atu0205at 210.632 kb on - strand, within Atu0205at 210.648 kb on - strand, within Atu0205at 210.713 kb on + strand, within Atu0205at 210.728 kb on - strand, within Atu0205at 210.768 kb on - strand, within Atu0205at 210.768 kb on - strand, within Atu0205at 210.791 kb on - strand, within Atu0205at 210.809 kb on - strand, within Atu0205at 210.837 kb on - strand, within Atu0205at 210.859 kb on - strand, within Atu0205at 210.859 kb on - strand, within Atu0205at 210.866 kb on - strand, within Atu0205at 211.082 kb on + strandat 211.189 kb on + strandat 211.306 kb on - strand, within Atu0206at 211.397 kb on + strand, within Atu0206at 211.397 kb on + strand, within Atu0206at 211.539 kb on - strandat 211.581 kb on + strandat 211.612 kb on + strandat 211.642 kb on + strandat 211.646 kb on - strandat 211.647 kb on + strandat 211.650 kb on - strandat 211.680 kb on + strand, within Atu0207at 211.736 kb on + strand, within Atu0207at 211.771 kb on - strand, within Atu0207at 211.817 kb on - strand, within Atu0207at 211.826 kb on - strand, within Atu0207at 211.833 kb on + strand, within Atu0207at 211.833 kb on + strand, within Atu0207at 211.843 kb on - strand, within Atu0207at 211.902 kb on + strand, within Atu0207at 211.911 kb on + strand, within Atu0207at 211.919 kb on - strand, within Atu0207at 211.953 kb on + strand, within Atu0207at 211.956 kb on - strand, within Atu0207at 211.956 kb on - strand, within Atu0207at 211.961 kb on + strand, within Atu0207at 212.008 kb on + strand, within Atu0207at 212.008 kb on + strand, within Atu0207at 212.013 kb on + strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.021 kb on - strand, within Atu0207at 212.064 kb on - strand, within Atu0207at 212.169 kb on + strand, within Atu0207at 212.177 kb on - strand, within Atu0207at 212.184 kb on + strand, within Atu0207at 212.187 kb on - strand, within Atu0207at 212.262 kb on + strand, within Atu0207at 212.350 kb on - strand, within Atu0207at 212.418 kb on + strandat 212.445 kb on - strandat 212.513 kb on + strandat 212.599 kb on + strandat 212.621 kb on + strandat 212.685 kb on - strandat 212.685 kb on - strandat 212.688 kb on + strandat 212.692 kb on + strandat 212.702 kb on + strandat 212.710 kb on - strandat 212.710 kb on - strandat 212.710 kb on - strandat 212.731 kb on - strandat 212.768 kb on + strand, within Atu0208at 212.795 kb on - strand, within Atu0208at 212.871 kb on + strand, within Atu0208at 213.010 kb on + strand, within Atu0208at 213.015 kb on + strand, within Atu0208at 213.015 kb on + strand, within Atu0208at 213.015 kb on + strand, within Atu0208at 213.020 kb on + strand, within Atu0208at 213.052 kb on + strand, within Atu0208at 213.167 kb on - strand, within Atu0208at 213.201 kb on + strand, within Atu0208at 213.209 kb on - strand, within Atu0208at 213.225 kb on - strand, within Atu0208at 213.234 kb on + strand, within Atu0208at 213.241 kb on + strand, within Atu0208at 213.271 kb on + strand, within Atu0208at 213.271 kb on + strand, within Atu0208at 213.295 kb on + strand, within Atu0208at 213.318 kb on + strand, within Atu0208at 213.318 kb on - strand, within Atu0208at 213.323 kb on + strand, within Atu0208at 213.326 kb on - strand, within Atu0208at 213.388 kb on + strand, within Atu0208at 213.393 kb on + strand, within Atu0208at 213.396 kb on - strand, within Atu0208

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-alanine (C)
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210,569 - Atu0205 0.63 -3.2
210,587 + Atu0205 0.64 -4.3
210,595 - Atu0205 0.65 -3.1
210,632 - Atu0205 0.67 -3.3
210,648 - Atu0205 0.68 -3.7
210,713 + Atu0205 0.72 -4.0
210,728 - Atu0205 0.73 -2.9
210,768 - Atu0205 0.76 -4.0
210,768 - Atu0205 0.76 -4.6
210,791 - Atu0205 0.77 -3.4
210,809 - Atu0205 0.79 -4.3
210,837 - Atu0205 0.80 -2.2
210,859 - Atu0205 0.82 -3.3
210,859 - Atu0205 0.82 -4.2
210,866 - Atu0205 0.82 -2.5
211,082 + -2.3
211,189 + +0.4
211,306 - Atu0206 0.17 -0.2
211,397 + Atu0206 0.45 -0.1
211,397 + Atu0206 0.45 -0.8
211,539 - -0.3
211,581 + -1.4
211,612 + -2.1
211,642 + -2.3
211,646 - -0.5
211,647 + -0.6
211,650 - -2.1
211,680 + Atu0207 0.13 -1.5
211,736 + Atu0207 0.19 -1.9
211,771 - Atu0207 0.23 -1.9
211,817 - Atu0207 0.28 -1.7
211,826 - Atu0207 0.29 -2.4
211,833 + Atu0207 0.30 -1.0
211,833 + Atu0207 0.30 -1.2
211,843 - Atu0207 0.31 -1.6
211,902 + Atu0207 0.38 -2.1
211,911 + Atu0207 0.39 -1.4
211,919 - Atu0207 0.40 -1.2
211,953 + Atu0207 0.44 -1.5
211,956 - Atu0207 0.44 -1.5
211,956 - Atu0207 0.44 -1.7
211,961 + Atu0207 0.45 -1.9
212,008 + Atu0207 0.50 -2.1
212,008 + Atu0207 0.50 -1.4
212,013 + Atu0207 0.51 -2.4
212,016 - Atu0207 0.51 -2.0
212,016 - Atu0207 0.51 -2.3
212,016 - Atu0207 0.51 -1.1
212,016 - Atu0207 0.51 -1.3
212,021 - Atu0207 0.51 -2.0
212,064 - Atu0207 0.56 -1.2
212,169 + Atu0207 0.68 -1.7
212,177 - Atu0207 0.69 -2.2
212,184 + Atu0207 0.70 -2.6
212,187 - Atu0207 0.70 -1.7
212,262 + Atu0207 0.79 -2.1
212,350 - Atu0207 0.89 -2.3
212,418 + -1.3
212,445 - -1.9
212,513 + +0.0
212,599 + -0.1
212,621 + -0.1
212,685 - +0.0
212,685 - -0.2
212,688 + +0.0
212,692 + -0.0
212,702 + +0.2
212,710 - +0.1
212,710 - -0.2
212,710 - -0.2
212,731 - -0.4
212,768 + Atu0208 0.14 +0.2
212,795 - Atu0208 0.17 +0.8
212,871 + Atu0208 0.26 -0.8
213,010 + Atu0208 0.42 -0.3
213,015 + Atu0208 0.43 +0.6
213,015 + Atu0208 0.43 +0.1
213,015 + Atu0208 0.43 -0.1
213,020 + Atu0208 0.44 -0.3
213,052 + Atu0208 0.47 -0.3
213,167 - Atu0208 0.61 -0.8
213,201 + Atu0208 0.65 +0.7
213,209 - Atu0208 0.66 -0.8
213,225 - Atu0208 0.68 -0.3
213,234 + Atu0208 0.69 -0.9
213,241 + Atu0208 0.70 +0.0
213,271 + Atu0208 0.74 +0.5
213,271 + Atu0208 0.74 +0.0
213,295 + Atu0208 0.76 +0.2
213,318 + Atu0208 0.79 +0.2
213,318 - Atu0208 0.79 -0.1
213,323 + Atu0208 0.80 -0.3
213,326 - Atu0208 0.80 -0.1
213,388 + Atu0208 0.88 +0.3
213,393 + Atu0208 0.88 +0.1
213,396 - Atu0208 0.89 -0.2

Or see this region's nucleotide sequence