Strain Fitness in Agrobacterium fabrum C58 around Atu5481

Experiment: cholate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5479 and Atu5480 are separated by 13 nucleotidesAtu5480 and Atu5481 overlap by 4 nucleotidesAtu5481 and Atu5482 are separated by 33 nucleotides Atu5479: Atu5479 - acetylornithine deacetylase, at 471,138 to 472,301 Atu5479 Atu5480: Atu5480 - ABC transporter nucleotide binding/ATPase, at 472,315 to 473,079 Atu5480 Atu5481: Atu5481 - ABC transporter membrane spanning protein, at 473,076 to 473,804 Atu5481 Atu5482: Atu5482 - ABC transporter substrate binding protein (amino acid), at 473,838 to 474,647 Atu5482 Position (kb) 473 474Strain fitness (log2 ratio) -1 0 1at 472.163 kb on + strand, within Atu5479at 472.318 kb on + strandat 472.498 kb on - strand, within Atu5480at 472.518 kb on - strand, within Atu5480at 472.518 kb on - strand, within Atu5480at 472.537 kb on - strand, within Atu5480at 472.542 kb on + strand, within Atu5480at 472.557 kb on - strand, within Atu5480at 472.564 kb on + strand, within Atu5480at 472.727 kb on + strand, within Atu5480at 472.762 kb on + strand, within Atu5480at 472.896 kb on + strand, within Atu5480at 472.904 kb on - strand, within Atu5480at 472.913 kb on + strand, within Atu5480at 472.946 kb on - strand, within Atu5480at 472.979 kb on - strand, within Atu5480at 472.979 kb on - strand, within Atu5480at 473.121 kb on + strandat 473.178 kb on - strand, within Atu5481at 473.243 kb on - strand, within Atu5481at 473.398 kb on + strand, within Atu5481at 473.398 kb on - strand, within Atu5481at 473.406 kb on - strand, within Atu5481at 473.406 kb on - strand, within Atu5481at 473.474 kb on + strand, within Atu5481at 473.500 kb on - strand, within Atu5481at 473.512 kb on + strand, within Atu5481at 473.603 kb on + strand, within Atu5481at 473.611 kb on - strand, within Atu5481at 473.611 kb on - strand, within Atu5481at 473.688 kb on + strand, within Atu5481at 473.736 kb on - strandat 473.752 kb on - strandat 473.756 kb on + strandat 473.781 kb on + strandat 473.844 kb on - strandat 473.964 kb on - strand, within Atu5482at 474.014 kb on + strand, within Atu5482at 474.018 kb on - strand, within Atu5482at 474.026 kb on + strand, within Atu5482at 474.034 kb on - strand, within Atu5482at 474.034 kb on - strand, within Atu5482at 474.034 kb on - strand, within Atu5482at 474.034 kb on - strand, within Atu5482at 474.036 kb on + strand, within Atu5482at 474.036 kb on + strand, within Atu5482at 474.036 kb on + strand, within Atu5482at 474.039 kb on - strand, within Atu5482at 474.044 kb on - strand, within Atu5482at 474.044 kb on - strand, within Atu5482at 474.049 kb on - strand, within Atu5482at 474.084 kb on + strand, within Atu5482at 474.096 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.108 kb on + strand, within Atu5482at 474.116 kb on - strand, within Atu5482at 474.116 kb on - strand, within Atu5482at 474.116 kb on - strand, within Atu5482at 474.135 kb on - strand, within Atu5482at 474.157 kb on + strand, within Atu5482at 474.157 kb on + strand, within Atu5482at 474.157 kb on + strand, within Atu5482at 474.159 kb on - strand, within Atu5482at 474.160 kb on - strand, within Atu5482at 474.165 kb on - strand, within Atu5482at 474.165 kb on - strand, within Atu5482at 474.268 kb on + strand, within Atu5482at 474.394 kb on + strand, within Atu5482at 474.411 kb on - strand, within Atu5482at 474.413 kb on - strand, within Atu5482at 474.436 kb on + strand, within Atu5482at 474.436 kb on + strand, within Atu5482at 474.463 kb on - strand, within Atu5482at 474.547 kb on - strand, within Atu5482at 474.568 kb on + strandat 474.586 kb on - strandat 474.663 kb on - strandat 474.672 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction cholate (C)
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472,163 + Atu5479 0.88 +0.0
472,318 + +0.3
472,498 - Atu5480 0.24 -0.0
472,518 - Atu5480 0.27 +0.1
472,518 - Atu5480 0.27 -0.3
472,537 - Atu5480 0.29 -0.8
472,542 + Atu5480 0.30 +0.1
472,557 - Atu5480 0.32 +0.2
472,564 + Atu5480 0.33 +0.2
472,727 + Atu5480 0.54 +0.1
472,762 + Atu5480 0.58 +0.2
472,896 + Atu5480 0.76 +0.2
472,904 - Atu5480 0.77 +0.4
472,913 + Atu5480 0.78 +0.4
472,946 - Atu5480 0.82 -0.4
472,979 - Atu5480 0.87 -0.8
472,979 - Atu5480 0.87 -0.0
473,121 + -0.0
473,178 - Atu5481 0.14 +1.1
473,243 - Atu5481 0.23 +0.1
473,398 + Atu5481 0.44 -1.1
473,398 - Atu5481 0.44 +0.1
473,406 - Atu5481 0.45 -0.1
473,406 - Atu5481 0.45 -0.3
473,474 + Atu5481 0.55 -0.4
473,500 - Atu5481 0.58 +0.3
473,512 + Atu5481 0.60 +0.3
473,603 + Atu5481 0.72 +0.7
473,611 - Atu5481 0.73 +0.7
473,611 - Atu5481 0.73 +0.0
473,688 + Atu5481 0.84 +0.1
473,736 - -0.1
473,752 - -0.2
473,756 + -0.1
473,781 + +0.3
473,844 - +0.0
473,964 - Atu5482 0.16 +0.1
474,014 + Atu5482 0.22 +0.0
474,018 - Atu5482 0.22 +0.4
474,026 + Atu5482 0.23 -0.4
474,034 - Atu5482 0.24 +0.2
474,034 - Atu5482 0.24 -0.7
474,034 - Atu5482 0.24 -0.0
474,034 - Atu5482 0.24 -0.3
474,036 + Atu5482 0.24 +0.8
474,036 + Atu5482 0.24 +0.1
474,036 + Atu5482 0.24 +0.2
474,039 - Atu5482 0.25 -0.0
474,044 - Atu5482 0.25 +0.4
474,044 - Atu5482 0.25 -0.0
474,049 - Atu5482 0.26 -0.1
474,084 + Atu5482 0.30 -0.8
474,096 + Atu5482 0.32 -0.8
474,108 + Atu5482 0.33 +0.2
474,108 + Atu5482 0.33 +0.5
474,108 + Atu5482 0.33 -0.6
474,108 + Atu5482 0.33 -0.1
474,108 + Atu5482 0.33 -0.4
474,108 + Atu5482 0.33 +0.1
474,116 - Atu5482 0.34 -0.1
474,116 - Atu5482 0.34 +0.4
474,116 - Atu5482 0.34 -0.0
474,135 - Atu5482 0.37 +0.5
474,157 + Atu5482 0.39 +0.0
474,157 + Atu5482 0.39 -0.5
474,157 + Atu5482 0.39 +0.3
474,159 - Atu5482 0.40 -0.1
474,160 - Atu5482 0.40 -0.7
474,165 - Atu5482 0.40 +1.0
474,165 - Atu5482 0.40 +0.6
474,268 + Atu5482 0.53 -0.6
474,394 + Atu5482 0.69 +0.2
474,411 - Atu5482 0.71 +0.4
474,413 - Atu5482 0.71 -0.2
474,436 + Atu5482 0.74 +0.7
474,436 + Atu5482 0.74 +0.1
474,463 - Atu5482 0.77 +0.0
474,547 - Atu5482 0.88 +0.1
474,568 + -0.9
474,586 - +0.1
474,663 - -0.3
474,672 + -0.6

Or see this region's nucleotide sequence