Experiment: cholate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3566 and Atu3567 are separated by 69 nucleotides Atu3567 and Atu3568 are separated by 196 nucleotides Atu3568 and Atu3569 are separated by 8 nucleotides Atu3569 and Atu3570 are separated by 37 nucleotides
Atu3566: Atu3566 - hypothetical protein, at 619,899 to 620,321
Atu3566
Atu3567: Atu3567 - hypothetical protein, at 620,391 to 620,882
Atu3567
Atu3568: Atu3568 - hypothetical protein, at 621,079 to 623,007
Atu3568
Atu3569: Atu3569 - hypothetical protein, at 623,016 to 623,444
Atu3569
Atu3570: Atu3570 - hypothetical protein, at 623,482 to 624,678
Atu3570
Position (kb) 621
622
623
624 Strain fitness (log2 ratio) -2
-1
0
1
2 at 620.137 kb on - strand, within Atu3566 at 620.171 kb on - strand, within Atu3566 at 620.245 kb on - strand, within Atu3566 at 620.316 kb on + strand at 620.422 kb on - strand at 620.440 kb on + strand at 620.508 kb on - strand, within Atu3567 at 620.684 kb on - strand, within Atu3567 at 620.743 kb on + strand, within Atu3567 at 620.810 kb on - strand, within Atu3567 at 620.975 kb on - strand at 620.987 kb on - strand at 620.997 kb on - strand at 621.007 kb on - strand at 621.139 kb on - strand at 621.175 kb on - strand at 621.184 kb on + strand at 621.184 kb on + strand at 621.187 kb on - strand at 621.192 kb on - strand at 621.365 kb on - strand, within Atu3568 at 621.410 kb on + strand, within Atu3568 at 621.582 kb on + strand, within Atu3568 at 621.679 kb on + strand, within Atu3568 at 621.687 kb on - strand, within Atu3568 at 621.693 kb on + strand, within Atu3568 at 621.784 kb on - strand, within Atu3568 at 621.804 kb on - strand, within Atu3568 at 621.841 kb on - strand, within Atu3568 at 621.925 kb on + strand, within Atu3568 at 621.940 kb on + strand, within Atu3568 at 621.964 kb on + strand, within Atu3568 at 622.001 kb on + strand, within Atu3568 at 622.004 kb on + strand, within Atu3568 at 622.035 kb on + strand, within Atu3568 at 622.036 kb on + strand, within Atu3568 at 622.078 kb on + strand, within Atu3568 at 622.086 kb on - strand, within Atu3568 at 622.110 kb on + strand, within Atu3568 at 622.110 kb on + strand, within Atu3568 at 622.203 kb on + strand, within Atu3568 at 622.221 kb on - strand, within Atu3568 at 622.236 kb on + strand, within Atu3568 at 622.236 kb on + strand, within Atu3568 at 622.242 kb on + strand, within Atu3568 at 622.330 kb on + strand, within Atu3568 at 622.330 kb on + strand, within Atu3568 at 622.330 kb on + strand, within Atu3568 at 622.330 kb on + strand, within Atu3568 at 622.337 kb on + strand, within Atu3568 at 622.338 kb on - strand, within Atu3568 at 622.338 kb on - strand, within Atu3568 at 622.425 kb on + strand, within Atu3568 at 622.494 kb on + strand, within Atu3568 at 622.503 kb on - strand, within Atu3568 at 622.685 kb on + strand, within Atu3568 at 622.693 kb on - strand, within Atu3568 at 622.755 kb on + strand, within Atu3568 at 622.775 kb on - strand, within Atu3568 at 622.947 kb on - strand at 623.134 kb on + strand, within Atu3569 at 623.139 kb on + strand, within Atu3569 at 623.149 kb on + strand, within Atu3569 at 623.177 kb on + strand, within Atu3569 at 623.346 kb on - strand, within Atu3569 at 623.358 kb on + strand, within Atu3569 at 623.366 kb on - strand, within Atu3569 at 623.445 kb on + strand at 623.451 kb on - strand at 623.635 kb on + strand, within Atu3570 at 623.769 kb on + strand, within Atu3570 at 623.793 kb on + strand, within Atu3570 at 623.830 kb on + strand, within Atu3570 at 623.852 kb on + strand, within Atu3570 at 623.887 kb on + strand, within Atu3570 at 623.919 kb on - strand, within Atu3570
Per-strain Table
Position Strand Gene LocusTag Fraction cholate (C) remove 620,137 - Atu3566 0.56 -0.1 620,171 - Atu3566 0.64 -0.6 620,245 - Atu3566 0.82 -0.0 620,316 + -0.2 620,422 - +0.1 620,440 + -0.2 620,508 - Atu3567 0.24 -0.1 620,684 - Atu3567 0.60 -0.1 620,743 + Atu3567 0.72 +0.3 620,810 - Atu3567 0.85 +0.5 620,975 - -0.2 620,987 - +0.6 620,997 - -0.2 621,007 - +0.1 621,139 - +0.3 621,175 - -1.8 621,184 + +0.1 621,184 + -0.2 621,187 - +0.0 621,192 - +0.5 621,365 - Atu3568 0.15 +0.6 621,410 + Atu3568 0.17 +0.3 621,582 + Atu3568 0.26 +0.6 621,679 + Atu3568 0.31 +0.2 621,687 - Atu3568 0.32 +0.4 621,693 + Atu3568 0.32 +0.5 621,784 - Atu3568 0.37 +0.0 621,804 - Atu3568 0.38 -0.5 621,841 - Atu3568 0.40 -0.1 621,925 + Atu3568 0.44 +1.5 621,940 + Atu3568 0.45 +0.3 621,964 + Atu3568 0.46 -0.1 622,001 + Atu3568 0.48 +0.6 622,004 + Atu3568 0.48 +0.4 622,035 + Atu3568 0.50 -0.5 622,036 + Atu3568 0.50 -2.4 622,078 + Atu3568 0.52 +1.8 622,086 - Atu3568 0.52 +0.1 622,110 + Atu3568 0.53 -0.1 622,110 + Atu3568 0.53 +0.7 622,203 + Atu3568 0.58 +0.5 622,221 - Atu3568 0.59 +0.9 622,236 + Atu3568 0.60 -0.2 622,236 + Atu3568 0.60 -0.6 622,242 + Atu3568 0.60 +0.4 622,330 + Atu3568 0.65 +0.7 622,330 + Atu3568 0.65 -0.1 622,330 + Atu3568 0.65 +1.1 622,330 + Atu3568 0.65 -0.7 622,337 + Atu3568 0.65 +0.0 622,338 - Atu3568 0.65 +0.8 622,338 - Atu3568 0.65 +0.0 622,425 + Atu3568 0.70 +0.3 622,494 + Atu3568 0.73 -1.3 622,503 - Atu3568 0.74 +0.5 622,685 + Atu3568 0.83 -0.0 622,693 - Atu3568 0.84 +0.4 622,755 + Atu3568 0.87 +2.1 622,775 - Atu3568 0.88 +0.4 622,947 - -0.2 623,134 + Atu3569 0.28 +0.5 623,139 + Atu3569 0.29 +0.3 623,149 + Atu3569 0.31 +0.2 623,177 + Atu3569 0.38 +0.2 623,346 - Atu3569 0.77 -0.3 623,358 + Atu3569 0.80 -0.0 623,366 - Atu3569 0.82 +0.1 623,445 + -0.1 623,451 - +0.1 623,635 + Atu3570 0.13 +0.2 623,769 + Atu3570 0.24 +0.2 623,793 + Atu3570 0.26 +0.1 623,830 + Atu3570 0.29 +0.4 623,852 + Atu3570 0.31 -1.3 623,887 + Atu3570 0.34 -0.5 623,919 - Atu3570 0.37 +1.3
Or see this region's nucleotide sequence