Experiment: cholate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3441 and Atu3442 are separated by 55 nucleotides Atu3442 and Atu3443 are separated by 42 nucleotides Atu3443 and Atu3444 are separated by 222 nucleotides
Atu3441: Atu3441 - nitrilotriacetate monooxygenase, at 488,032 to 489,384
Atu3441
Atu3442: Atu3442 - oligopeptide ABC transporter substrate-binding protein, at 489,440 to 491,035
Atu3442
Atu3443: Atu3443 - hypothetical protein, at 491,078 to 491,527
Atu3443
Atu3444: Atu3444 - oligopeptide ABC transporter substrate-binding protein, at 491,750 to 493,381
Atu3444
Position (kb) 489
490
491
492 Strain fitness (log2 ratio) -1
0
1
2 at 488.452 kb on - strand, within Atu3441 at 488.475 kb on + strand, within Atu3441 at 488.581 kb on + strand, within Atu3441 at 488.726 kb on - strand, within Atu3441 at 488.726 kb on - strand, within Atu3441 at 488.737 kb on + strand, within Atu3441 at 488.772 kb on + strand, within Atu3441 at 488.781 kb on - strand, within Atu3441 at 488.791 kb on - strand, within Atu3441 at 488.888 kb on - strand, within Atu3441 at 488.967 kb on - strand, within Atu3441 at 488.974 kb on - strand, within Atu3441 at 488.999 kb on - strand, within Atu3441 at 489.010 kb on + strand, within Atu3441 at 489.018 kb on - strand, within Atu3441 at 489.018 kb on - strand, within Atu3441 at 489.060 kb on + strand, within Atu3441 at 489.060 kb on - strand, within Atu3441 at 489.065 kb on + strand, within Atu3441 at 489.083 kb on - strand, within Atu3441 at 489.083 kb on - strand, within Atu3441 at 489.176 kb on + strand, within Atu3441 at 489.293 kb on + strand at 489.293 kb on + strand at 489.353 kb on + strand at 489.358 kb on + strand at 489.379 kb on + strand at 489.396 kb on - strand at 489.438 kb on + strand at 489.509 kb on - strand at 489.532 kb on - strand at 489.767 kb on - strand, within Atu3442 at 489.913 kb on + strand, within Atu3442 at 489.921 kb on - strand, within Atu3442 at 489.932 kb on - strand, within Atu3442 at 490.045 kb on + strand, within Atu3442 at 490.152 kb on - strand, within Atu3442 at 490.153 kb on + strand, within Atu3442 at 490.161 kb on - strand, within Atu3442 at 490.220 kb on + strand, within Atu3442 at 490.230 kb on - strand, within Atu3442 at 490.245 kb on + strand, within Atu3442 at 490.253 kb on - strand, within Atu3442 at 490.288 kb on - strand, within Atu3442 at 490.290 kb on + strand, within Atu3442 at 490.307 kb on + strand, within Atu3442 at 490.365 kb on + strand, within Atu3442 at 490.373 kb on - strand, within Atu3442 at 490.419 kb on - strand, within Atu3442 at 490.473 kb on - strand, within Atu3442 at 490.492 kb on + strand, within Atu3442 at 490.536 kb on + strand, within Atu3442 at 490.553 kb on + strand, within Atu3442 at 490.624 kb on - strand, within Atu3442 at 490.758 kb on - strand, within Atu3442 at 490.925 kb on - strand at 491.030 kb on + strand at 491.334 kb on - strand, within Atu3443 at 491.362 kb on + strand, within Atu3443 at 491.403 kb on + strand, within Atu3443 at 491.444 kb on - strand, within Atu3443 at 491.639 kb on + strand at 491.703 kb on - strand at 491.705 kb on + strand at 491.713 kb on + strand at 491.713 kb on + strand at 491.713 kb on + strand at 491.713 kb on + strand at 491.721 kb on - strand at 491.721 kb on - strand at 491.721 kb on - strand at 491.767 kb on - strand at 491.785 kb on + strand at 491.793 kb on - strand at 491.807 kb on - strand at 491.833 kb on + strand at 491.898 kb on + strand at 491.935 kb on + strand, within Atu3444 at 491.996 kb on - strand, within Atu3444 at 492.032 kb on - strand, within Atu3444
Per-strain Table
Position Strand Gene LocusTag Fraction cholate (C) remove 488,452 - Atu3441 0.31 +1.6 488,475 + Atu3441 0.33 +0.0 488,581 + Atu3441 0.41 -0.3 488,726 - Atu3441 0.51 +0.0 488,726 - Atu3441 0.51 +0.1 488,737 + Atu3441 0.52 -0.6 488,772 + Atu3441 0.55 -0.2 488,781 - Atu3441 0.55 +1.0 488,791 - Atu3441 0.56 -0.4 488,888 - Atu3441 0.63 +0.1 488,967 - Atu3441 0.69 +0.3 488,974 - Atu3441 0.70 -0.2 488,999 - Atu3441 0.71 +0.3 489,010 + Atu3441 0.72 +0.7 489,018 - Atu3441 0.73 -0.1 489,018 - Atu3441 0.73 -0.0 489,060 + Atu3441 0.76 +0.4 489,060 - Atu3441 0.76 -0.6 489,065 + Atu3441 0.76 -0.3 489,083 - Atu3441 0.78 -0.7 489,083 - Atu3441 0.78 +0.1 489,176 + Atu3441 0.85 -0.1 489,293 + +0.2 489,293 + -0.4 489,353 + -0.1 489,358 + +0.9 489,379 + -1.3 489,396 - -0.2 489,438 + -0.3 489,509 - -0.2 489,532 - -1.0 489,767 - Atu3442 0.20 +1.8 489,913 + Atu3442 0.30 +0.6 489,921 - Atu3442 0.30 +0.4 489,932 - Atu3442 0.31 +0.2 490,045 + Atu3442 0.38 +0.8 490,152 - Atu3442 0.45 +0.3 490,153 + Atu3442 0.45 +1.5 490,161 - Atu3442 0.45 +0.3 490,220 + Atu3442 0.49 +0.9 490,230 - Atu3442 0.49 -0.1 490,245 + Atu3442 0.50 -0.1 490,253 - Atu3442 0.51 +0.6 490,288 - Atu3442 0.53 +0.7 490,290 + Atu3442 0.53 -0.2 490,307 + Atu3442 0.54 -0.3 490,365 + Atu3442 0.58 -0.6 490,373 - Atu3442 0.58 +0.2 490,419 - Atu3442 0.61 +0.4 490,473 - Atu3442 0.65 -0.1 490,492 + Atu3442 0.66 -0.7 490,536 + Atu3442 0.69 +0.4 490,553 + Atu3442 0.70 -0.5 490,624 - Atu3442 0.74 -0.0 490,758 - Atu3442 0.83 +0.3 490,925 - -0.3 491,030 + +0.2 491,334 - Atu3443 0.57 -0.0 491,362 + Atu3443 0.63 -0.6 491,403 + Atu3443 0.72 +0.0 491,444 - Atu3443 0.81 -0.7 491,639 + +0.2 491,703 - -0.1 491,705 + +0.8 491,713 + -0.5 491,713 + +0.0 491,713 + -0.1 491,713 + -0.1 491,721 - -0.6 491,721 - -0.1 491,721 - +0.4 491,767 - +0.2 491,785 + -0.4 491,793 - +0.0 491,807 - -0.2 491,833 + +0.9 491,898 + +0.4 491,935 + Atu3444 0.11 +0.2 491,996 - Atu3444 0.15 +0.3 492,032 - Atu3444 0.17 -0.4
Or see this region's nucleotide sequence