Experiment: cholate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0274 and Atu0275 are separated by 88 nucleotides Atu0275 and Atu0276 are separated by 12 nucleotides Atu0276 and Atu0277 are separated by 93 nucleotides Atu0277 and Atu0278 are separated by 86 nucleotides
Atu0274: Atu0274 - aminopeptidase, at 270,165 to 271,403
Atu0274
Atu0275: Atu0275 - hypothetical protein, at 271,492 to 271,968
Atu0275
Atu0276: Atu0276 - hypothetical protein, at 271,981 to 272,328
Atu0276
Atu0277: Atu0277 - hypothetical protein, at 272,422 to 272,817
Atu0277
Atu0278: Atu0278 - hypothetical protein, at 272,904 to 273,791
Atu0278
Position (kb) 271
272
273 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 271.014 kb on - strand, within Atu0274 at 271.125 kb on - strand, within Atu0274 at 271.130 kb on - strand, within Atu0274 at 271.264 kb on + strand, within Atu0274 at 271.298 kb on + strand at 271.952 kb on - strand at 271.958 kb on + strand at 271.958 kb on + strand at 272.027 kb on + strand, within Atu0276 at 272.049 kb on - strand, within Atu0276 at 272.195 kb on + strand, within Atu0276 at 272.257 kb on + strand, within Atu0276 at 272.270 kb on - strand, within Atu0276 at 272.322 kb on + strand at 272.485 kb on - strand, within Atu0277 at 272.518 kb on - strand, within Atu0277 at 272.552 kb on + strand, within Atu0277 at 272.620 kb on + strand, within Atu0277 at 272.655 kb on + strand, within Atu0277 at 272.655 kb on + strand, within Atu0277 at 272.718 kb on + strand, within Atu0277 at 272.718 kb on + strand, within Atu0277 at 272.726 kb on - strand, within Atu0277 at 272.726 kb on - strand, within Atu0277 at 272.731 kb on - strand, within Atu0277 at 272.804 kb on + strand at 272.875 kb on - strand at 272.974 kb on + strand at 273.095 kb on - strand, within Atu0278 at 273.169 kb on + strand, within Atu0278 at 273.252 kb on + strand, within Atu0278 at 273.257 kb on + strand, within Atu0278 at 273.260 kb on - strand, within Atu0278 at 273.260 kb on - strand, within Atu0278 at 273.291 kb on - strand, within Atu0278
Per-strain Table
Position Strand Gene LocusTag Fraction cholate (C) remove 271,014 - Atu0274 0.69 +0.6 271,125 - Atu0274 0.77 -0.2 271,130 - Atu0274 0.78 +0.4 271,264 + Atu0274 0.89 -0.1 271,298 + -0.4 271,952 - -0.0 271,958 + +0.3 271,958 + -0.9 272,027 + Atu0276 0.13 +1.0 272,049 - Atu0276 0.20 +0.3 272,195 + Atu0276 0.61 +0.2 272,257 + Atu0276 0.79 +0.5 272,270 - Atu0276 0.83 +0.4 272,322 + -0.4 272,485 - Atu0277 0.16 +1.0 272,518 - Atu0277 0.24 +0.2 272,552 + Atu0277 0.33 -0.0 272,620 + Atu0277 0.50 -0.8 272,655 + Atu0277 0.59 -0.1 272,655 + Atu0277 0.59 -0.6 272,718 + Atu0277 0.75 +0.6 272,718 + Atu0277 0.75 +0.6 272,726 - Atu0277 0.77 +0.4 272,726 - Atu0277 0.77 -0.0 272,731 - Atu0277 0.78 +1.0 272,804 + +0.9 272,875 - -0.2 272,974 + +0.5 273,095 - Atu0278 0.22 +0.0 273,169 + Atu0278 0.30 -2.8 273,252 + Atu0278 0.39 +0.2 273,257 + Atu0278 0.40 +0.0 273,260 - Atu0278 0.40 +0.7 273,260 - Atu0278 0.40 +0.0 273,291 - Atu0278 0.44 +0.2
Or see this region's nucleotide sequence