Experiment: Ferulic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0158 and Atu0159 overlap by 1 nucleotides Atu0159 and Atu0160 are separated by 34 nucleotides Atu0160 and Atu0161 are separated by 265 nucleotides
Atu0158: Atu0158 - ABC transporter, membrane spanning protein, at 164,146 to 164,919
Atu0158
Atu0159: Atu0159 - ABC transporter, nucleotide binding/ATPase protein, at 164,919 to 165,704
Atu0159
Atu0160: Atu0160 - transcriptional regulator, GntR family, at 165,739 to 166,476
Atu0160
Atu0161: Atu0161 - biopolymer transport protein, at 166,742 to 167,764
Atu0161
Position (kb) 165
166
167 Strain fitness (log2 ratio) -1
0
1 at 164.744 kb on - strand, within Atu0158 at 164.813 kb on - strand, within Atu0158 at 164.848 kb on + strand at 164.857 kb on - strand at 164.896 kb on - strand at 165.043 kb on + strand, within Atu0159 at 165.131 kb on + strand, within Atu0159 at 165.158 kb on + strand, within Atu0159 at 165.173 kb on + strand, within Atu0159 at 165.175 kb on - strand, within Atu0159 at 165.183 kb on + strand, within Atu0159 at 165.337 kb on - strand, within Atu0159 at 165.460 kb on + strand, within Atu0159 at 165.460 kb on + strand, within Atu0159 at 165.460 kb on + strand, within Atu0159 at 165.460 kb on + strand, within Atu0159 at 165.468 kb on - strand, within Atu0159 at 165.468 kb on - strand, within Atu0159 at 165.468 kb on - strand, within Atu0159 at 165.468 kb on - strand, within Atu0159 at 165.472 kb on - strand, within Atu0159 at 165.527 kb on - strand, within Atu0159 at 165.527 kb on - strand, within Atu0159 at 165.532 kb on + strand, within Atu0159 at 165.605 kb on + strand, within Atu0159 at 165.615 kb on + strand, within Atu0159 at 165.632 kb on - strand at 165.647 kb on + strand at 165.739 kb on - strand at 165.799 kb on + strand at 165.818 kb on - strand, within Atu0160 at 165.839 kb on + strand, within Atu0160 at 165.885 kb on + strand, within Atu0160 at 165.926 kb on - strand, within Atu0160 at 165.933 kb on + strand, within Atu0160 at 166.046 kb on - strand, within Atu0160 at 166.069 kb on - strand, within Atu0160 at 166.107 kb on - strand, within Atu0160 at 166.137 kb on + strand, within Atu0160 at 166.282 kb on + strand, within Atu0160 at 166.452 kb on + strand at 166.452 kb on + strand at 166.700 kb on + strand at 166.753 kb on - strand at 166.783 kb on - strand at 166.810 kb on + strand at 166.897 kb on + strand, within Atu0161 at 166.912 kb on + strand, within Atu0161 at 166.920 kb on - strand, within Atu0161 at 166.920 kb on - strand, within Atu0161 at 166.926 kb on + strand, within Atu0161 at 166.934 kb on - strand, within Atu0161 at 166.934 kb on - strand, within Atu0161 at 166.968 kb on - strand, within Atu0161 at 167.022 kb on + strand, within Atu0161 at 167.090 kb on + strand, within Atu0161 at 167.099 kb on + strand, within Atu0161 at 167.175 kb on - strand, within Atu0161 at 167.254 kb on + strand, within Atu0161 at 167.346 kb on + strand, within Atu0161 at 167.346 kb on + strand, within Atu0161 at 167.354 kb on - strand, within Atu0161 at 167.380 kb on + strand, within Atu0161 at 167.464 kb on + strand, within Atu0161 at 167.474 kb on + strand, within Atu0161
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic Acid (C) remove 164,744 - Atu0158 0.77 +0.6 164,813 - Atu0158 0.86 -0.1 164,848 + +0.2 164,857 - +0.3 164,896 - -0.1 165,043 + Atu0159 0.16 -0.1 165,131 + Atu0159 0.27 -1.3 165,158 + Atu0159 0.30 -1.3 165,173 + Atu0159 0.32 +0.1 165,175 - Atu0159 0.33 +1.1 165,183 + Atu0159 0.34 -0.1 165,337 - Atu0159 0.53 -0.1 165,460 + Atu0159 0.69 +0.0 165,460 + Atu0159 0.69 +0.0 165,460 + Atu0159 0.69 +1.1 165,460 + Atu0159 0.69 -0.2 165,468 - Atu0159 0.70 -0.1 165,468 - Atu0159 0.70 +0.3 165,468 - Atu0159 0.70 +0.6 165,468 - Atu0159 0.70 -0.3 165,472 - Atu0159 0.70 +0.1 165,527 - Atu0159 0.77 +0.5 165,527 - Atu0159 0.77 +0.5 165,532 + Atu0159 0.78 +0.1 165,605 + Atu0159 0.87 +0.1 165,615 + Atu0159 0.89 +0.5 165,632 - -0.9 165,647 + +0.1 165,739 - +0.3 165,799 + +0.5 165,818 - Atu0160 0.11 +0.0 165,839 + Atu0160 0.14 -0.6 165,885 + Atu0160 0.20 -0.2 165,926 - Atu0160 0.25 -0.0 165,933 + Atu0160 0.26 -0.3 166,046 - Atu0160 0.42 -1.2 166,069 - Atu0160 0.45 -0.2 166,107 - Atu0160 0.50 -0.4 166,137 + Atu0160 0.54 -0.8 166,282 + Atu0160 0.74 -0.8 166,452 + +0.5 166,452 + -0.3 166,700 + +1.0 166,753 - -0.1 166,783 - +0.1 166,810 + +0.2 166,897 + Atu0161 0.15 +0.2 166,912 + Atu0161 0.17 +0.6 166,920 - Atu0161 0.17 +0.6 166,920 - Atu0161 0.17 -0.3 166,926 + Atu0161 0.18 -0.5 166,934 - Atu0161 0.19 +0.4 166,934 - Atu0161 0.19 -0.6 166,968 - Atu0161 0.22 -1.6 167,022 + Atu0161 0.27 +0.2 167,090 + Atu0161 0.34 -0.3 167,099 + Atu0161 0.35 +0.2 167,175 - Atu0161 0.42 -0.2 167,254 + Atu0161 0.50 +0.1 167,346 + Atu0161 0.59 -0.1 167,346 + Atu0161 0.59 +0.1 167,354 - Atu0161 0.60 +0.1 167,380 + Atu0161 0.62 +0.2 167,464 + Atu0161 0.71 -0.2 167,474 + Atu0161 0.72 -0.6
Or see this region's nucleotide sequence