Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14985

Experiment: 3.75mM_PTB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS14975 and DZA65_RS14980 are separated by 117 nucleotidesDZA65_RS14980 and DZA65_RS14985 are separated by 15 nucleotidesDZA65_RS14985 and DZA65_RS14990 are separated by 635 nucleotides DZA65_RS14975: DZA65_RS14975 - NADH-quinone oxidoreductase subunit C/D, at 3,267,594 to 3,269,393 _RS14975 DZA65_RS14980: DZA65_RS14980 - NADH-quinone oxidoreductase subunit B, at 3,269,511 to 3,270,185 _RS14980 DZA65_RS14985: DZA65_RS14985 - NADH-quinone oxidoreductase subunit A, at 3,270,201 to 3,270,647 _RS14985 DZA65_RS14990: DZA65_RS14990 - transcriptional regulator LrhA, at 3,271,283 to 3,272,233 _RS14990 Position (kb) 3270 3271Strain fitness (log2 ratio) -2 -1 0 1at 3269.412 kb on - strandat 3269.412 kb on - strandat 3269.421 kb on - strandat 3269.480 kb on - strandat 3269.483 kb on + strandat 3269.538 kb on - strandat 3269.681 kb on - strandat 3270.176 kb on + strandat 3270.755 kb on - strandat 3270.774 kb on - strandat 3270.794 kb on - strandat 3270.804 kb on - strandat 3270.841 kb on - strandat 3270.841 kb on - strandat 3270.873 kb on + strandat 3270.874 kb on - strandat 3270.874 kb on - strandat 3270.886 kb on - strandat 3270.939 kb on + strandat 3270.950 kb on + strandat 3270.950 kb on + strandat 3270.951 kb on - strandat 3270.951 kb on - strandat 3270.951 kb on - strandat 3270.951 kb on - strandat 3270.955 kb on - strandat 3270.955 kb on - strandat 3270.955 kb on - strandat 3270.955 kb on - strandat 3270.994 kb on + strandat 3270.998 kb on - strandat 3271.035 kb on + strandat 3271.035 kb on + strandat 3271.035 kb on + strandat 3271.035 kb on + strandat 3271.036 kb on - strandat 3271.036 kb on - strandat 3271.041 kb on - strandat 3271.184 kb on + strandat 3271.184 kb on + strandat 3271.184 kb on + strandat 3271.184 kb on + strandat 3271.185 kb on - strandat 3271.212 kb on + strandat 3271.212 kb on + strandat 3271.212 kb on + strandat 3271.212 kb on + strandat 3271.212 kb on + strandat 3271.213 kb on - strandat 3271.213 kb on - strandat 3271.213 kb on - strandat 3271.213 kb on - strandat 3271.213 kb on - strandat 3271.272 kb on + strandat 3271.273 kb on - strandat 3271.273 kb on - strandat 3271.289 kb on - strandat 3271.289 kb on - strandat 3271.289 kb on - strandat 3271.291 kb on + strandat 3271.291 kb on + strandat 3271.292 kb on - strandat 3271.292 kb on - strandat 3271.292 kb on - strandat 3271.298 kb on + strandat 3271.306 kb on + strandat 3271.306 kb on + strandat 3271.396 kb on + strand, within DZA65_RS14990at 3271.397 kb on - strand, within DZA65_RS14990at 3271.440 kb on + strand, within DZA65_RS14990at 3271.440 kb on + strand, within DZA65_RS14990at 3271.440 kb on + strand, within DZA65_RS14990at 3271.440 kb on + strand, within DZA65_RS14990at 3271.440 kb on + strand, within DZA65_RS14990at 3271.440 kb on + strand, within DZA65_RS14990at 3271.440 kb on + strand, within DZA65_RS14990at 3271.440 kb on + strand, within DZA65_RS14990at 3271.441 kb on - strand, within DZA65_RS14990at 3271.441 kb on - strand, within DZA65_RS14990at 3271.441 kb on - strand, within DZA65_RS14990at 3271.441 kb on - strand, within DZA65_RS14990at 3271.441 kb on - strand, within DZA65_RS14990at 3271.441 kb on - strand, within DZA65_RS14990at 3271.441 kb on - strand, within DZA65_RS14990at 3271.443 kb on + strand, within DZA65_RS14990at 3271.548 kb on - strand, within DZA65_RS14990at 3271.584 kb on + strand, within DZA65_RS14990at 3271.584 kb on + strand, within DZA65_RS14990at 3271.585 kb on - strand, within DZA65_RS14990at 3271.585 kb on - strand, within DZA65_RS14990at 3271.585 kb on - strand, within DZA65_RS14990at 3271.616 kb on - strand, within DZA65_RS14990at 3271.616 kb on - strand, within DZA65_RS14990

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Per-strain Table

Position Strand Gene LocusTag Fraction 3.75mM_PTB
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3,269,412 - -0.6
3,269,412 - +1.0
3,269,421 - -0.4
3,269,480 - +0.3
3,269,483 + +1.0
3,269,538 - +0.5
3,269,681 - +0.4
3,270,176 + -0.0
3,270,755 - -0.3
3,270,774 - +0.3
3,270,794 - -0.1
3,270,804 - -0.5
3,270,841 - -0.3
3,270,841 - +0.7
3,270,873 + +0.2
3,270,874 - -0.2
3,270,874 - +0.7
3,270,886 - -1.3
3,270,939 + +0.6
3,270,950 + +0.6
3,270,950 + -0.0
3,270,951 - +0.1
3,270,951 - -0.0
3,270,951 - +0.4
3,270,951 - +0.8
3,270,955 - -1.7
3,270,955 - -0.6
3,270,955 - -1.6
3,270,955 - -0.2
3,270,994 + +0.7
3,270,998 - -0.0
3,271,035 + -0.2
3,271,035 + +0.2
3,271,035 + +0.1
3,271,035 + +0.6
3,271,036 - +0.4
3,271,036 - -0.3
3,271,041 - +0.4
3,271,184 + +1.0
3,271,184 + +0.4
3,271,184 + -0.6
3,271,184 + +1.0
3,271,185 - -1.3
3,271,212 + +0.2
3,271,212 + -0.0
3,271,212 + -0.3
3,271,212 + +0.2
3,271,212 + -0.3
3,271,213 - +0.5
3,271,213 - +0.4
3,271,213 - -1.0
3,271,213 - +0.6
3,271,213 - -1.8
3,271,272 + -0.8
3,271,273 - +0.2
3,271,273 - +0.5
3,271,289 - -1.6
3,271,289 - -0.6
3,271,289 - +1.0
3,271,291 + +1.2
3,271,291 + -0.2
3,271,292 - -0.6
3,271,292 - -0.3
3,271,292 - -0.6
3,271,298 + -1.1
3,271,306 + -0.8
3,271,306 + +0.2
3,271,396 + DZA65_RS14990 0.12 -0.4
3,271,397 - DZA65_RS14990 0.12 -0.3
3,271,440 + DZA65_RS14990 0.17 -1.9
3,271,440 + DZA65_RS14990 0.17 -1.6
3,271,440 + DZA65_RS14990 0.17 -1.8
3,271,440 + DZA65_RS14990 0.17 +0.7
3,271,440 + DZA65_RS14990 0.17 -1.1
3,271,440 + DZA65_RS14990 0.17 -0.0
3,271,440 + DZA65_RS14990 0.17 -1.7
3,271,440 + DZA65_RS14990 0.17 +0.1
3,271,441 - DZA65_RS14990 0.17 +1.0
3,271,441 - DZA65_RS14990 0.17 -1.2
3,271,441 - DZA65_RS14990 0.17 +1.0
3,271,441 - DZA65_RS14990 0.17 -0.1
3,271,441 - DZA65_RS14990 0.17 -1.3
3,271,441 - DZA65_RS14990 0.17 +0.7
3,271,441 - DZA65_RS14990 0.17 -2.2
3,271,443 + DZA65_RS14990 0.17 -0.9
3,271,548 - DZA65_RS14990 0.28 -0.8
3,271,584 + DZA65_RS14990 0.32 -0.3
3,271,584 + DZA65_RS14990 0.32 -0.4
3,271,585 - DZA65_RS14990 0.32 -2.0
3,271,585 - DZA65_RS14990 0.32 -0.3
3,271,585 - DZA65_RS14990 0.32 -0.3
3,271,616 - DZA65_RS14990 0.35 -0.0
3,271,616 - DZA65_RS14990 0.35 -1.0

Or see this region's nucleotide sequence