Experiment: 3.75mM_PTB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS07265 and DZA65_RS07270 are separated by 459 nucleotides DZA65_RS07270 and DZA65_RS07275 overlap by 4 nucleotides DZA65_RS07275 and DZA65_RS07280 overlap by 17 nucleotides
DZA65_RS07265: DZA65_RS07265 - AMP nucleosidase, at 1,510,534 to 1,511,991
_RS07265
DZA65_RS07270: DZA65_RS07270 - D-galactonate utilization transcriptional regulator DgoR, at 1,512,451 to 1,513,149
_RS07270
DZA65_RS07275: DZA65_RS07275 - 2-dehydro-3-deoxygalactonokinase, at 1,513,146 to 1,514,042
_RS07275
DZA65_RS07280: DZA65_RS07280 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 1,514,026 to 1,514,643
_RS07280
Position (kb) 1512
1513
1514 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1511.459 kb on - strand, within DZA65_RS07265 at 1511.615 kb on + strand, within DZA65_RS07265 at 1511.615 kb on + strand, within DZA65_RS07265 at 1511.615 kb on + strand, within DZA65_RS07265 at 1511.615 kb on + strand, within DZA65_RS07265 at 1511.615 kb on + strand, within DZA65_RS07265 at 1511.615 kb on + strand, within DZA65_RS07265 at 1511.615 kb on + strand, within DZA65_RS07265 at 1511.616 kb on - strand, within DZA65_RS07265 at 1511.616 kb on - strand, within DZA65_RS07265 at 1511.616 kb on - strand, within DZA65_RS07265 at 1511.616 kb on - strand, within DZA65_RS07265 at 1511.616 kb on - strand, within DZA65_RS07265 at 1511.616 kb on - strand, within DZA65_RS07265 at 1511.616 kb on - strand, within DZA65_RS07265 at 1511.616 kb on - strand, within DZA65_RS07265 at 1511.622 kb on - strand, within DZA65_RS07265 at 1511.666 kb on + strand, within DZA65_RS07265 at 1511.666 kb on + strand, within DZA65_RS07265 at 1511.667 kb on - strand, within DZA65_RS07265 at 1511.667 kb on - strand, within DZA65_RS07265 at 1511.702 kb on + strand, within DZA65_RS07265 at 1511.702 kb on + strand, within DZA65_RS07265 at 1511.702 kb on + strand, within DZA65_RS07265 at 1511.703 kb on - strand, within DZA65_RS07265 at 1511.703 kb on - strand, within DZA65_RS07265 at 1511.768 kb on + strand, within DZA65_RS07265 at 1511.769 kb on - strand, within DZA65_RS07265 at 1511.769 kb on - strand, within DZA65_RS07265 at 1511.880 kb on + strand at 1511.883 kb on + strand at 1511.883 kb on + strand at 1511.883 kb on + strand at 1511.884 kb on - strand at 1511.927 kb on + strand at 1511.927 kb on + strand at 1511.927 kb on + strand at 1511.927 kb on + strand at 1511.927 kb on + strand at 1511.927 kb on + strand at 1511.928 kb on - strand at 1511.928 kb on - strand at 1511.928 kb on - strand at 1512.196 kb on + strand at 1512.196 kb on + strand at 1512.196 kb on + strand at 1512.196 kb on + strand at 1512.197 kb on - strand at 1512.197 kb on - strand at 1512.197 kb on - strand at 1512.197 kb on - strand at 1512.197 kb on - strand at 1512.197 kb on - strand at 1512.197 kb on - strand at 1512.202 kb on + strand at 1512.202 kb on + strand at 1512.202 kb on + strand at 1512.202 kb on + strand at 1512.203 kb on - strand at 1512.203 kb on - strand at 1512.220 kb on - strand at 1512.408 kb on + strand at 1512.408 kb on + strand at 1512.408 kb on + strand at 1512.408 kb on + strand at 1512.409 kb on - strand at 1512.409 kb on - strand at 1512.409 kb on - strand at 1512.409 kb on - strand at 1512.409 kb on - strand at 1512.409 kb on - strand at 1512.420 kb on + strand at 1512.421 kb on - strand at 1512.457 kb on - strand at 1512.523 kb on + strand, within DZA65_RS07270 at 1512.686 kb on - strand, within DZA65_RS07270 at 1512.727 kb on + strand, within DZA65_RS07270 at 1512.728 kb on - strand, within DZA65_RS07270 at 1512.765 kb on + strand, within DZA65_RS07270 at 1512.933 kb on + strand, within DZA65_RS07270 at 1512.944 kb on + strand, within DZA65_RS07270 at 1512.945 kb on - strand, within DZA65_RS07270 at 1512.945 kb on - strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.002 kb on + strand, within DZA65_RS07270 at 1513.002 kb on + strand, within DZA65_RS07270 at 1513.003 kb on - strand, within DZA65_RS07270 at 1513.054 kb on + strand, within DZA65_RS07270 at 1513.054 kb on + strand, within DZA65_RS07270 at 1513.054 kb on + strand, within DZA65_RS07270 at 1513.055 kb on - strand, within DZA65_RS07270 at 1513.055 kb on - strand, within DZA65_RS07270 at 1513.077 kb on + strand, within DZA65_RS07270 at 1513.078 kb on - strand, within DZA65_RS07270 at 1513.133 kb on + strand at 1513.143 kb on + strand at 1513.143 kb on + strand at 1513.143 kb on + strand at 1513.143 kb on + strand at 1513.143 kb on + strand at 1513.143 kb on + strand at 1513.143 kb on + strand at 1513.143 kb on + strand at 1513.143 kb on + strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.158 kb on + strand at 1513.158 kb on + strand at 1513.158 kb on + strand at 1513.158 kb on + strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.377 kb on + strand, within DZA65_RS07275 at 1513.377 kb on + strand, within DZA65_RS07275 at 1513.378 kb on - strand, within DZA65_RS07275 at 1513.378 kb on - strand, within DZA65_RS07275 at 1513.378 kb on - strand at 1513.476 kb on - strand, within DZA65_RS07275 at 1513.476 kb on - strand, within DZA65_RS07275 at 1513.490 kb on + strand, within DZA65_RS07275 at 1513.536 kb on + strand, within DZA65_RS07275 at 1513.560 kb on + strand, within DZA65_RS07275 at 1513.560 kb on + strand, within DZA65_RS07275 at 1513.560 kb on + strand, within DZA65_RS07275 at 1513.561 kb on - strand, within DZA65_RS07275 at 1513.561 kb on - strand, within DZA65_RS07275 at 1513.672 kb on + strand, within DZA65_RS07275 at 1513.878 kb on + strand, within DZA65_RS07275 at 1513.878 kb on + strand, within DZA65_RS07275 at 1513.951 kb on + strand, within DZA65_RS07275 at 1513.951 kb on + strand, within DZA65_RS07275 at 1513.951 kb on + strand, within DZA65_RS07275 at 1513.951 kb on + strand, within DZA65_RS07275 at 1513.952 kb on - strand, within DZA65_RS07275 at 1513.952 kb on - strand, within DZA65_RS07275 at 1513.952 kb on - strand, within DZA65_RS07275 at 1513.981 kb on + strand at 1513.981 kb on + strand at 1513.981 kb on + strand at 1513.981 kb on + strand at 1513.981 kb on + strand at 1513.981 kb on + strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1514.011 kb on + strand at 1514.012 kb on - strand at 1514.012 kb on - strand at 1514.037 kb on + strand at 1514.038 kb on - strand at 1514.038 kb on - strand at 1514.040 kb on + strand at 1514.040 kb on + strand at 1514.040 kb on + strand at 1514.040 kb on + strand at 1514.040 kb on + strand at 1514.041 kb on - strand at 1514.041 kb on - strand at 1514.041 kb on - strand at 1514.041 kb on - strand at 1514.041 kb on - strand at 1514.041 kb on - strand at 1514.041 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3.75mM_PTB remove 1,511,459 - DZA65_RS07265 0.63 +2.7 1,511,615 + DZA65_RS07265 0.74 +0.7 1,511,615 + DZA65_RS07265 0.74 +0.1 1,511,615 + DZA65_RS07265 0.74 -0.3 1,511,615 + DZA65_RS07265 0.74 -0.8 1,511,615 + DZA65_RS07265 0.74 -0.0 1,511,615 + DZA65_RS07265 0.74 +1.9 1,511,615 + DZA65_RS07265 0.74 +0.5 1,511,616 - DZA65_RS07265 0.74 +0.1 1,511,616 - DZA65_RS07265 0.74 -0.1 1,511,616 - DZA65_RS07265 0.74 +0.7 1,511,616 - DZA65_RS07265 0.74 +0.8 1,511,616 - DZA65_RS07265 0.74 -2.2 1,511,616 - DZA65_RS07265 0.74 -0.3 1,511,616 - DZA65_RS07265 0.74 +2.2 1,511,616 - DZA65_RS07265 0.74 +1.2 1,511,622 - DZA65_RS07265 0.75 +0.3 1,511,666 + DZA65_RS07265 0.78 +0.2 1,511,666 + DZA65_RS07265 0.78 +0.8 1,511,667 - DZA65_RS07265 0.78 -1.2 1,511,667 - DZA65_RS07265 0.78 +0.5 1,511,702 + DZA65_RS07265 0.80 -0.0 1,511,702 + DZA65_RS07265 0.80 -0.9 1,511,702 + DZA65_RS07265 0.80 +0.8 1,511,703 - DZA65_RS07265 0.80 -1.7 1,511,703 - DZA65_RS07265 0.80 -0.2 1,511,768 + DZA65_RS07265 0.85 +0.7 1,511,769 - DZA65_RS07265 0.85 +0.0 1,511,769 - DZA65_RS07265 0.85 -0.7 1,511,880 + -1.2 1,511,883 + -0.7 1,511,883 + -1.9 1,511,883 + +0.2 1,511,884 - -0.1 1,511,927 + -0.9 1,511,927 + +0.2 1,511,927 + -1.5 1,511,927 + +0.1 1,511,927 + -0.9 1,511,927 + +0.7 1,511,928 - +0.0 1,511,928 - +0.1 1,511,928 - +2.2 1,512,196 + +0.1 1,512,196 + -0.9 1,512,196 + -0.3 1,512,196 + -0.6 1,512,197 - -1.5 1,512,197 - +0.1 1,512,197 - -1.6 1,512,197 - +0.3 1,512,197 - -0.1 1,512,197 - +0.7 1,512,197 - +0.1 1,512,202 + -0.3 1,512,202 + +3.5 1,512,202 + +0.0 1,512,202 + -0.3 1,512,203 - +0.0 1,512,203 - -0.5 1,512,220 - +1.7 1,512,408 + +0.2 1,512,408 + +0.3 1,512,408 + -0.7 1,512,408 + +0.3 1,512,409 - +0.4 1,512,409 - +0.1 1,512,409 - -0.1 1,512,409 - -1.3 1,512,409 - -0.5 1,512,409 - +1.7 1,512,420 + -1.1 1,512,421 - -0.3 1,512,457 - -0.3 1,512,523 + DZA65_RS07270 0.10 -0.2 1,512,686 - DZA65_RS07270 0.34 -1.3 1,512,727 + DZA65_RS07270 0.39 -1.3 1,512,728 - DZA65_RS07270 0.40 -0.7 1,512,765 + DZA65_RS07270 0.45 -0.7 1,512,933 + DZA65_RS07270 0.69 -0.9 1,512,944 + DZA65_RS07270 0.71 +0.4 1,512,945 - DZA65_RS07270 0.71 +0.1 1,512,945 - DZA65_RS07270 0.71 +0.5 1,513,000 + DZA65_RS07270 0.79 -1.1 1,513,000 + DZA65_RS07270 0.79 -0.8 1,513,000 + DZA65_RS07270 0.79 -0.5 1,513,000 + DZA65_RS07270 0.79 +1.1 1,513,000 + DZA65_RS07270 0.79 +0.1 1,513,000 + DZA65_RS07270 0.79 -1.9 1,513,000 + DZA65_RS07270 0.79 -0.9 1,513,000 + DZA65_RS07270 0.79 +1.4 1,513,000 + DZA65_RS07270 0.79 +0.7 1,513,000 + DZA65_RS07270 0.79 -1.2 1,513,000 + DZA65_RS07270 0.79 +0.7 1,513,000 + DZA65_RS07270 0.79 -2.2 1,513,000 + DZA65_RS07270 0.79 -1.3 1,513,000 + DZA65_RS07270 0.79 -0.0 1,513,001 - DZA65_RS07270 0.79 +0.1 1,513,001 - DZA65_RS07270 0.79 +0.9 1,513,001 - DZA65_RS07270 0.79 +1.1 1,513,001 - DZA65_RS07270 0.79 -1.3 1,513,001 - DZA65_RS07270 0.79 -1.8 1,513,001 - DZA65_RS07270 0.79 +0.1 1,513,001 - DZA65_RS07270 0.79 -0.1 1,513,001 - DZA65_RS07270 0.79 -1.5 1,513,001 - DZA65_RS07270 0.79 -0.3 1,513,001 - DZA65_RS07270 0.79 -0.8 1,513,001 - DZA65_RS07270 0.79 -0.3 1,513,001 - DZA65_RS07270 0.79 -0.3 1,513,001 - DZA65_RS07270 0.79 +1.7 1,513,001 - DZA65_RS07270 0.79 -0.8 1,513,001 - DZA65_RS07270 0.79 -0.5 1,513,001 - DZA65_RS07270 0.79 +0.4 1,513,002 + DZA65_RS07270 0.79 -1.2 1,513,002 + DZA65_RS07270 0.79 -0.9 1,513,003 - DZA65_RS07270 0.79 -0.5 1,513,054 + DZA65_RS07270 0.86 -0.2 1,513,054 + DZA65_RS07270 0.86 -1.0 1,513,054 + DZA65_RS07270 0.86 -0.9 1,513,055 - DZA65_RS07270 0.86 -2.2 1,513,055 - DZA65_RS07270 0.86 -0.9 1,513,077 + DZA65_RS07270 0.90 -0.2 1,513,078 - DZA65_RS07270 0.90 -1.6 1,513,133 + +0.0 1,513,143 + +2.7 1,513,143 + +0.7 1,513,143 + -1.1 1,513,143 + +0.2 1,513,143 + +0.8 1,513,143 + -0.6 1,513,143 + -2.8 1,513,143 + +0.5 1,513,143 + -1.3 1,513,144 - -0.7 1,513,144 - +0.1 1,513,144 - +0.1 1,513,144 - -2.2 1,513,144 - +0.7 1,513,144 - -0.9 1,513,144 - +0.2 1,513,144 - -0.7 1,513,144 - -0.5 1,513,144 - -0.2 1,513,158 + +0.4 1,513,158 + +0.5 1,513,158 + -0.3 1,513,158 + +0.8 1,513,159 - +0.1 1,513,159 - -0.0 1,513,159 - -0.5 1,513,159 - -0.2 1,513,159 - -0.7 1,513,159 - +0.7 1,513,159 - -0.2 1,513,159 - +0.1 1,513,159 - -0.3 1,513,159 - +0.4 1,513,159 - -0.0 1,513,159 - -0.8 1,513,377 + DZA65_RS07275 0.26 -0.7 1,513,377 + DZA65_RS07275 0.26 -0.5 1,513,378 - DZA65_RS07275 0.26 +0.2 1,513,378 - DZA65_RS07275 0.26 +0.1 1,513,378 - -0.9 1,513,476 - DZA65_RS07275 0.37 -0.1 1,513,476 - DZA65_RS07275 0.37 -0.9 1,513,490 + DZA65_RS07275 0.38 +0.0 1,513,536 + DZA65_RS07275 0.43 -0.3 1,513,560 + DZA65_RS07275 0.46 -1.2 1,513,560 + DZA65_RS07275 0.46 -1.2 1,513,560 + DZA65_RS07275 0.46 +0.2 1,513,561 - DZA65_RS07275 0.46 -0.5 1,513,561 - DZA65_RS07275 0.46 +1.1 1,513,672 + DZA65_RS07275 0.59 -0.3 1,513,878 + DZA65_RS07275 0.82 -0.8 1,513,878 + DZA65_RS07275 0.82 -1.0 1,513,951 + DZA65_RS07275 0.90 -0.7 1,513,951 + DZA65_RS07275 0.90 -0.4 1,513,951 + DZA65_RS07275 0.90 -1.3 1,513,951 + DZA65_RS07275 0.90 +1.7 1,513,952 - DZA65_RS07275 0.90 -1.3 1,513,952 - DZA65_RS07275 0.90 -1.3 1,513,952 - DZA65_RS07275 0.90 +1.7 1,513,981 + +0.4 1,513,981 + -0.4 1,513,981 + +0.0 1,513,981 + -0.5 1,513,981 + -0.2 1,513,981 + +0.7 1,513,982 - +0.9 1,513,982 - -0.5 1,513,982 - -0.7 1,513,982 - +0.7 1,513,982 - -0.3 1,513,982 - +0.4 1,513,982 - -1.2 1,514,011 + -0.7 1,514,012 - +0.9 1,514,012 - -1.3 1,514,037 + -0.3 1,514,038 - -0.7 1,514,038 - -1.7 1,514,040 + -0.4 1,514,040 + -0.9 1,514,040 + +1.2 1,514,040 + +1.0 1,514,040 + -1.9 1,514,041 - -1.6 1,514,041 - +0.4 1,514,041 - +2.0 1,514,041 - -1.2 1,514,041 - -0.0 1,514,041 - +0.7 1,514,041 - -0.9
Or see this region's nucleotide sequence