Experiment: 3.75mM_PTB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01015 and DZA65_RS01020 are separated by 36 nucleotides DZA65_RS01020 and DZA65_RS01025 are separated by 25 nucleotides DZA65_RS01025 and DZA65_RS01030 are separated by 52 nucleotides DZA65_RS01030 and DZA65_RS01035 are separated by 12 nucleotides
DZA65_RS01015: DZA65_RS01015 - helix-turn-helix transcriptional regulator, at 231,184 to 231,501
_RS01015
DZA65_RS01020: DZA65_RS01020 - YeeE/YedE family protein, at 231,538 to 231,966
_RS01020
DZA65_RS01025: DZA65_RS01025 - membrane protein, at 231,992 to 232,420
_RS01025
DZA65_RS01030: DZA65_RS01030 - acetyl-CoA C-acyltransferase FadA, at 232,473 to 233,636
_RS01030
DZA65_RS01035: DZA65_RS01035 - fatty acid oxidation complex subunit alpha FadB, at 233,649 to 235,838
_RS01035
Position (kb) 232
233
234 Strain fitness (log2 ratio) -2
-1
0
1
2 at 231.478 kb on + strand at 231.478 kb on + strand at 231.478 kb on + strand at 231.479 kb on - strand at 231.479 kb on - strand at 231.479 kb on - strand at 231.479 kb on - strand at 231.479 kb on - strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.499 kb on + strand at 231.499 kb on + strand at 231.499 kb on + strand at 231.500 kb on - strand at 231.500 kb on - strand at 231.500 kb on - strand at 231.549 kb on + strand at 231.550 kb on - strand at 231.550 kb on - strand at 231.588 kb on + strand, within DZA65_RS01020 at 231.589 kb on - strand, within DZA65_RS01020 at 231.624 kb on - strand, within DZA65_RS01020 at 231.776 kb on + strand, within DZA65_RS01020 at 232.002 kb on + strand at 232.002 kb on + strand at 232.002 kb on + strand at 232.002 kb on + strand at 232.003 kb on - strand at 232.003 kb on - strand at 232.003 kb on - strand at 232.091 kb on - strand, within DZA65_RS01025 at 232.219 kb on - strand, within DZA65_RS01025 at 232.234 kb on + strand, within DZA65_RS01025 at 232.323 kb on - strand, within DZA65_RS01025 at 232.323 kb on - strand, within DZA65_RS01025 at 232.379 kb on + strand at 232.379 kb on + strand at 232.379 kb on + strand at 232.379 kb on + strand at 232.379 kb on + strand at 232.379 kb on + strand at 232.380 kb on - strand at 232.380 kb on - strand at 232.380 kb on - strand at 232.380 kb on - strand at 232.380 kb on - strand at 232.380 kb on - strand at 232.393 kb on + strand at 232.474 kb on + strand at 232.475 kb on - strand at 232.476 kb on + strand at 232.477 kb on - strand at 232.517 kb on + strand at 232.518 kb on - strand at 232.518 kb on - strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.524 kb on - strand at 232.524 kb on - strand at 232.524 kb on - strand at 232.524 kb on - strand at 232.524 kb on - strand at 232.524 kb on - strand at 232.524 kb on - strand at 232.565 kb on + strand at 232.646 kb on + strand, within DZA65_RS01030 at 232.740 kb on + strand, within DZA65_RS01030 at 232.740 kb on + strand, within DZA65_RS01030 at 232.761 kb on + strand, within DZA65_RS01030 at 232.762 kb on - strand, within DZA65_RS01030 at 232.762 kb on - strand, within DZA65_RS01030 at 232.762 kb on - strand, within DZA65_RS01030 at 232.991 kb on + strand, within DZA65_RS01030 at 233.021 kb on - strand, within DZA65_RS01030 at 233.069 kb on + strand, within DZA65_RS01030 at 233.213 kb on + strand, within DZA65_RS01030 at 233.416 kb on - strand, within DZA65_RS01030 at 233.416 kb on - strand, within DZA65_RS01030 at 233.476 kb on + strand, within DZA65_RS01030 at 233.480 kb on + strand, within DZA65_RS01030 at 233.480 kb on + strand, within DZA65_RS01030 at 233.480 kb on + strand, within DZA65_RS01030 at 233.481 kb on - strand, within DZA65_RS01030 at 233.481 kb on - strand, within DZA65_RS01030 at 233.481 kb on - strand, within DZA65_RS01030 at 233.481 kb on - strand, within DZA65_RS01030 at 233.650 kb on + strand at 233.651 kb on - strand at 233.699 kb on - strand at 233.701 kb on + strand at 233.701 kb on + strand at 233.701 kb on + strand at 233.701 kb on + strand at 233.701 kb on + strand at 233.701 kb on + strand at 233.702 kb on - strand at 233.702 kb on - strand at 233.702 kb on - strand at 233.702 kb on - strand at 233.743 kb on - strand at 233.749 kb on + strand at 233.749 kb on + strand at 233.750 kb on - strand at 233.750 kb on - strand at 233.750 kb on - strand at 233.750 kb on - strand at 233.791 kb on + strand at 233.792 kb on - strand at 233.792 kb on - strand at 233.792 kb on - strand at 233.792 kb on - strand at 233.810 kb on + strand at 233.810 kb on + strand at 233.810 kb on + strand at 233.860 kb on + strand at 233.860 kb on + strand at 234.012 kb on - strand, within DZA65_RS01035 at 234.040 kb on - strand, within DZA65_RS01035 at 234.040 kb on - strand, within DZA65_RS01035 at 234.223 kb on + strand, within DZA65_RS01035 at 234.223 kb on + strand, within DZA65_RS01035 at 234.224 kb on - strand, within DZA65_RS01035 at 234.224 kb on - strand, within DZA65_RS01035 at 234.224 kb on - strand at 234.224 kb on - strand, within DZA65_RS01035 at 234.224 kb on - strand, within DZA65_RS01035 at 234.224 kb on - strand, within DZA65_RS01035 at 234.322 kb on + strand, within DZA65_RS01035 at 234.322 kb on + strand, within DZA65_RS01035 at 234.322 kb on + strand, within DZA65_RS01035 at 234.323 kb on - strand, within DZA65_RS01035 at 234.323 kb on - strand, within DZA65_RS01035 at 234.400 kb on + strand, within DZA65_RS01035 at 234.400 kb on + strand, within DZA65_RS01035 at 234.400 kb on + strand, within DZA65_RS01035 at 234.401 kb on - strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.468 kb on - strand, within DZA65_RS01035 at 234.468 kb on - strand, within DZA65_RS01035 at 234.468 kb on - strand, within DZA65_RS01035 at 234.468 kb on - strand, within DZA65_RS01035 at 234.468 kb on - strand at 234.468 kb on - strand, within DZA65_RS01035 at 234.468 kb on - strand, within DZA65_RS01035 at 234.519 kb on + strand, within DZA65_RS01035 at 234.519 kb on + strand, within DZA65_RS01035 at 234.519 kb on + strand, within DZA65_RS01035 at 234.520 kb on - strand, within DZA65_RS01035 at 234.520 kb on - strand, within DZA65_RS01035 at 234.520 kb on - strand, within DZA65_RS01035 at 234.520 kb on - strand, within DZA65_RS01035 at 234.531 kb on + strand, within DZA65_RS01035 at 234.557 kb on + strand, within DZA65_RS01035 at 234.558 kb on - strand, within DZA65_RS01035 at 234.571 kb on - strand, within DZA65_RS01035 at 234.622 kb on - strand, within DZA65_RS01035 at 234.622 kb on - strand, within DZA65_RS01035 at 234.622 kb on - strand, within DZA65_RS01035
Per-strain Table
Position Strand Gene LocusTag Fraction 3.75mM_PTB remove 231,478 + -0.9 231,478 + +1.1 231,478 + +0.3 231,479 - -0.1 231,479 - -0.9 231,479 - +0.1 231,479 - -0.5 231,479 - -2.6 231,487 + -0.0 231,487 + -0.2 231,487 + -0.6 231,487 + +1.5 231,487 + -1.1 231,487 + +0.5 231,487 + +0.9 231,488 - +0.2 231,488 - -1.1 231,488 - -1.3 231,488 - -0.3 231,488 - +2.0 231,488 - +0.2 231,488 - +0.5 231,488 - -0.2 231,488 - +1.9 231,499 + +1.1 231,499 + -2.3 231,499 + -0.8 231,500 - +0.3 231,500 - -1.0 231,500 - -1.1 231,549 + -0.7 231,550 - -0.2 231,550 - +0.1 231,588 + DZA65_RS01020 0.12 -0.8 231,589 - DZA65_RS01020 0.12 +1.0 231,624 - DZA65_RS01020 0.20 -0.6 231,776 + DZA65_RS01020 0.55 -0.6 232,002 + -0.1 232,002 + -0.7 232,002 + -0.7 232,002 + -0.0 232,003 - +1.2 232,003 - +0.1 232,003 - -0.3 232,091 - DZA65_RS01025 0.23 +0.1 232,219 - DZA65_RS01025 0.53 +0.1 232,234 + DZA65_RS01025 0.56 +0.7 232,323 - DZA65_RS01025 0.77 -1.9 232,323 - DZA65_RS01025 0.77 -0.1 232,379 + +0.4 232,379 + -0.9 232,379 + -0.7 232,379 + -0.6 232,379 + +0.0 232,379 + -2.1 232,380 - -1.3 232,380 - -1.3 232,380 - +0.6 232,380 - +1.2 232,380 - +0.0 232,380 - -0.3 232,393 + +0.3 232,474 + -1.1 232,475 - +1.0 232,476 + +1.6 232,477 - -0.7 232,517 + -0.9 232,518 - -0.9 232,518 - -0.1 232,523 + -1.3 232,523 + +0.1 232,523 + -0.4 232,523 + +1.7 232,523 + +0.5 232,523 + -0.5 232,523 + +1.3 232,523 + +0.7 232,523 + +0.1 232,523 + -1.0 232,523 + +0.3 232,524 - -1.6 232,524 - -1.3 232,524 - +0.4 232,524 - -0.7 232,524 - -1.9 232,524 - -0.9 232,524 - -1.6 232,565 + -1.9 232,646 + DZA65_RS01030 0.15 -0.6 232,740 + DZA65_RS01030 0.23 +0.6 232,740 + DZA65_RS01030 0.23 -0.0 232,761 + DZA65_RS01030 0.25 +0.3 232,762 - DZA65_RS01030 0.25 -0.5 232,762 - DZA65_RS01030 0.25 +0.4 232,762 - DZA65_RS01030 0.25 +1.5 232,991 + DZA65_RS01030 0.45 +0.5 233,021 - DZA65_RS01030 0.47 -0.0 233,069 + DZA65_RS01030 0.51 -0.5 233,213 + DZA65_RS01030 0.64 +0.3 233,416 - DZA65_RS01030 0.81 +0.3 233,416 - DZA65_RS01030 0.81 +1.0 233,476 + DZA65_RS01030 0.86 -0.3 233,480 + DZA65_RS01030 0.87 +1.6 233,480 + DZA65_RS01030 0.87 +1.5 233,480 + DZA65_RS01030 0.87 +1.4 233,481 - DZA65_RS01030 0.87 +0.7 233,481 - DZA65_RS01030 0.87 -0.3 233,481 - DZA65_RS01030 0.87 +0.7 233,481 - DZA65_RS01030 0.87 +0.6 233,650 + -0.0 233,651 - -0.9 233,699 - -0.0 233,701 + +0.4 233,701 + -0.1 233,701 + +1.0 233,701 + +1.4 233,701 + -1.1 233,701 + -0.2 233,702 - +0.3 233,702 - -0.2 233,702 - +0.6 233,702 - +0.1 233,743 - +0.7 233,749 + +0.7 233,749 + +1.7 233,750 - -0.6 233,750 - +0.1 233,750 - -0.6 233,750 - +1.3 233,791 + +0.3 233,792 - -0.9 233,792 - +0.7 233,792 - -0.4 233,792 - -2.7 233,810 + -0.5 233,810 + -0.4 233,810 + +1.0 233,860 + -0.9 233,860 + -0.6 234,012 - DZA65_RS01035 0.17 +0.7 234,040 - DZA65_RS01035 0.18 +0.7 234,040 - DZA65_RS01035 0.18 +0.3 234,223 + DZA65_RS01035 0.26 -0.2 234,223 + DZA65_RS01035 0.26 +0.1 234,224 - DZA65_RS01035 0.26 +0.6 234,224 - DZA65_RS01035 0.26 +1.9 234,224 - -0.3 234,224 - DZA65_RS01035 0.26 +0.0 234,224 - DZA65_RS01035 0.26 -1.9 234,224 - DZA65_RS01035 0.26 -0.8 234,322 + DZA65_RS01035 0.31 +1.6 234,322 + DZA65_RS01035 0.31 -0.5 234,322 + DZA65_RS01035 0.31 +0.4 234,323 - DZA65_RS01035 0.31 -1.9 234,323 - DZA65_RS01035 0.31 +0.6 234,400 + DZA65_RS01035 0.34 +0.4 234,400 + DZA65_RS01035 0.34 +0.3 234,400 + DZA65_RS01035 0.34 -0.1 234,401 - DZA65_RS01035 0.34 -2.1 234,467 + DZA65_RS01035 0.37 -1.6 234,467 + DZA65_RS01035 0.37 +0.3 234,467 + DZA65_RS01035 0.37 +2.3 234,467 + DZA65_RS01035 0.37 -0.7 234,467 + DZA65_RS01035 0.37 -0.3 234,467 + DZA65_RS01035 0.37 -0.4 234,467 + DZA65_RS01035 0.37 -2.5 234,467 + DZA65_RS01035 0.37 -0.7 234,467 + DZA65_RS01035 0.37 +0.1 234,467 + DZA65_RS01035 0.37 +0.1 234,468 - DZA65_RS01035 0.37 -0.3 234,468 - DZA65_RS01035 0.37 -0.3 234,468 - DZA65_RS01035 0.37 -0.3 234,468 - DZA65_RS01035 0.37 -0.2 234,468 - +1.1 234,468 - DZA65_RS01035 0.37 +0.5 234,468 - DZA65_RS01035 0.37 -1.2 234,519 + DZA65_RS01035 0.40 +0.3 234,519 + DZA65_RS01035 0.40 -0.1 234,519 + DZA65_RS01035 0.40 -0.1 234,520 - DZA65_RS01035 0.40 -0.4 234,520 - DZA65_RS01035 0.40 -0.9 234,520 - DZA65_RS01035 0.40 -1.3 234,520 - DZA65_RS01035 0.40 +0.7 234,531 + DZA65_RS01035 0.40 -1.6 234,557 + DZA65_RS01035 0.41 +1.5 234,558 - DZA65_RS01035 0.42 +0.4 234,571 - DZA65_RS01035 0.42 -1.3 234,622 - DZA65_RS01035 0.44 +1.7 234,622 - DZA65_RS01035 0.44 -0.1 234,622 - DZA65_RS01035 0.44 +0.1
Or see this region's nucleotide sequence