Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07290

Experiment: 3.75mM_PTB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3.75mM_PTB
1,515,246	+		DZA65_RS07285	0.53	-0.0
1,515,260	+		DZA65_RS07285	0.54	+1.8
1,515,294	+		DZA65_RS07285	0.57	+0.4
1,515,294	+		DZA65_RS07285	0.57	+1.6
1,515,294	+		DZA65_RS07285	0.57	+2.8
1,515,294	+		DZA65_RS07285	0.57	-1.7
1,515,297	+		DZA65_RS07285	0.57	-1.0
1,515,297	+		DZA65_RS07285	0.57	-0.6
1,515,297	+				+0.4
1,515,298	-		DZA65_RS07285	0.57	-0.0
1,515,347	+		DZA65_RS07285	0.62	+0.6
1,515,347	+		DZA65_RS07285	0.62	+0.7
1,515,347	+		DZA65_RS07285	0.62	-0.9
1,515,347	+		DZA65_RS07285	0.62	-0.2
1,515,347	+		DZA65_RS07285	0.62	-1.8
1,515,348	-		DZA65_RS07285	0.62	-2.3
1,515,348	-		DZA65_RS07285	0.62	+1.0
1,515,348	-		DZA65_RS07285	0.62	+1.0
1,515,348	-		DZA65_RS07285	0.62	-0.2
1,515,369	-		DZA65_RS07285	0.63	-0.6
1,515,432	-		DZA65_RS07285	0.69	+0.1
1,515,446	+		DZA65_RS07285	0.70	-0.6
1,515,447	-		DZA65_RS07285	0.70	+0.2
1,515,447	-		DZA65_RS07285	0.70	-1.0
1,515,503	-		DZA65_RS07285	0.75	-0.8
1,515,503	-		DZA65_RS07285	0.75	+0.2
1,515,559	+		DZA65_RS07285	0.80	+0.2
1,515,588	+		DZA65_RS07285	0.83	-1.0
1,515,588	+		DZA65_RS07285	0.83	-1.8
1,515,588	+		DZA65_RS07285	0.83	-0.6
1,515,588	+		DZA65_RS07285	0.83	+0.1
1,515,589	-		DZA65_RS07285	0.83	-0.5
1,515,591	-		DZA65_RS07285	0.83	-0.8
1,515,615	+		DZA65_RS07285	0.85	-0.7
1,515,616	-		DZA65_RS07285	0.85	+4.0
1,515,616	-		DZA65_RS07285	0.85	-0.0
1,515,627	-		DZA65_RS07285	0.86	+0.4
1,515,660	+		DZA65_RS07285	0.89	-1.3
1,515,660	+		DZA65_RS07285	0.89	-0.7
1,515,671	+		DZA65_RS07285	0.90	-0.6
1,515,723	-				-0.2
1,515,790	-				+0.2
1,515,826	+				-0.3
1,515,827	-				-0.8
1,515,836	-				-0.2
1,515,836	-				-1.6
1,515,836	-				+0.7
1,515,850	-				+1.2
1,515,865	+				-1.7
1,515,872	+				-0.0
1,515,873	-				-0.0
1,515,873	-				-0.7
1,515,873	-				-0.3
1,515,876	-				-0.4
1,515,876	-				-0.1
1,515,879	+				-0.3
1,515,936	+				-0.0
1,515,960	-				-1.3
1,516,023	-				+0.2
1,516,077	-				+1.0
1,516,101	-				-0.0
1,516,148	-				-0.0
1,516,180	-				+0.2
1,516,248	+				+0.3
1,516,248	+				-2.2
1,516,264	+				+0.5
1,516,265	-				-0.0
1,516,303	-				-0.3
1,516,342	+		DZA65_RS07290	0.12	+0.4
1,516,343	-		DZA65_RS07290	0.12	-0.2
1,516,369	+		DZA65_RS07290	0.14	+0.2
1,516,369	+		DZA65_RS07290	0.14	+1.0
1,516,369	+		DZA65_RS07290	0.14	-0.3
1,516,369	+		DZA65_RS07290	0.14	+0.1
1,516,369	+		DZA65_RS07290	0.14	-1.0
1,516,369	+		DZA65_RS07290	0.14	-1.6
1,516,369	+		DZA65_RS07290	0.14	+0.7
1,516,370	-		DZA65_RS07290	0.14	-0.3
1,516,370	-		DZA65_RS07290	0.14	+1.0
1,516,370	-		DZA65_RS07290	0.14	-0.0
1,516,370	-		DZA65_RS07290	0.14	-0.0
1,516,370	-		DZA65_RS07290	0.14	-0.6
1,516,371	+		DZA65_RS07290	0.15	+0.3
1,516,371	+		DZA65_RS07290	0.15	-0.0
1,516,371	+		DZA65_RS07290	0.15	+0.4
1,516,371	+		DZA65_RS07290	0.15	+1.0
1,516,371	+		DZA65_RS07290	0.15	+0.4
1,516,371	+		DZA65_RS07290	0.15	+0.4
1,516,371	+		DZA65_RS07290	0.15	-0.4
1,516,372	-		DZA65_RS07290	0.15	+0.4
1,516,372	-		DZA65_RS07290	0.15	-1.3
1,516,372	-		DZA65_RS07290	0.15	-0.6
1,516,372	-		DZA65_RS07290	0.15	-0.9
1,516,372	-		DZA65_RS07290	0.15	-0.2
1,516,372	-		DZA65_RS07290	0.15	-1.8
1,516,372	-		DZA65_RS07290	0.15	-1.7
1,516,376	+		DZA65_RS07290	0.15	-2.2
1,516,376	+		DZA65_RS07290	0.15	-0.3
1,516,429	+		DZA65_RS07290	0.19	-0.0
1,516,429	+		DZA65_RS07290	0.19	-0.0
1,516,429	+		DZA65_RS07290	0.19	+0.4
1,516,429	+		DZA65_RS07290	0.19	-0.6
1,516,430	-		DZA65_RS07290	0.19	-2.0
1,516,430	-		DZA65_RS07290	0.19	-0.6
1,516,435	-		DZA65_RS07290	0.20	-0.3
1,516,499	+		DZA65_RS07290	0.24	-0.1
1,516,560	+		DZA65_RS07290	0.29	+0.6
1,516,561	-		DZA65_RS07290	0.29	-0.0
1,516,612	+		DZA65_RS07290	0.33	-0.5
1,516,612	+		DZA65_RS07290	0.33	-1.5
1,516,612	+		DZA65_RS07290	0.33	-0.8
1,516,613	-		DZA65_RS07290	0.33	-0.4
1,516,613	-		DZA65_RS07290	0.33	-1.0
1,516,613	-		DZA65_RS07290	0.33	-0.6
1,516,613	-		DZA65_RS07290	0.33	-0.7
1,516,614	+		DZA65_RS07290	0.33	-2.2
1,516,614	+		DZA65_RS07290	0.33	-2.0
1,516,614	+		DZA65_RS07290	0.33	-0.4
1,516,615	-		DZA65_RS07290	0.33	-0.2
1,516,615	-		DZA65_RS07290	0.33	-0.5
1,516,734	+		DZA65_RS07290	0.43	-0.0
1,516,734	+		DZA65_RS07290	0.43	-0.0
1,516,735	-		DZA65_RS07290	0.43	+0.5
1,516,735	-		DZA65_RS07290	0.43	-0.9
1,516,735	-		DZA65_RS07290	0.43	+1.0
1,516,735	-		DZA65_RS07290	0.43	-0.4
1,516,798	+		DZA65_RS07290	0.48	+0.2
1,516,798	+		DZA65_RS07290	0.48	+1.0
1,516,798	+		DZA65_RS07290	0.48	-2.0
1,516,798	+		DZA65_RS07290	0.48	-0.3
1,516,798	+		DZA65_RS07290	0.48	-0.8
1,516,798	+		DZA65_RS07290	0.48	-0.6
1,516,798	+		DZA65_RS07290	0.48	-1.6
1,516,798	+		DZA65_RS07290	0.48	-0.6
1,516,799	-		DZA65_RS07290	0.48	-1.2
1,516,799	-		DZA65_RS07290	0.48	-0.6
1,516,799	-		DZA65_RS07290	0.48	+0.4
1,516,799	-		DZA65_RS07290	0.48	-1.5
1,516,799	-		DZA65_RS07290	0.48	-0.2
1,516,799	-		DZA65_RS07290	0.48	-0.8
1,516,857	+		DZA65_RS07290	0.52	-1.3
1,516,915	+		DZA65_RS07290	0.57	+2.0
1,516,915	+		DZA65_RS07290	0.57	-0.6
1,516,915	+		DZA65_RS07290	0.57	+0.7
1,516,915	+		DZA65_RS07290	0.57	-0.2
1,516,915	+		DZA65_RS07290	0.57	-0.5
1,516,915	+		DZA65_RS07290	0.57	-0.0
1,516,916	-		DZA65_RS07290	0.57	-0.0
1,516,916	-		DZA65_RS07290	0.57	-0.0
1,516,916	-		DZA65_RS07290	0.57	-0.2
1,516,916	-		DZA65_RS07290	0.57	+0.2
1,516,916	-		DZA65_RS07290	0.57	+0.4
1,516,916	-		DZA65_RS07290	0.57	-1.2
1,516,916	-		DZA65_RS07290	0.57	-0.5
1,516,916	-		DZA65_RS07290	0.57	+1.0
1,516,916	-		DZA65_RS07290	0.57	-0.4
1,516,975	+		DZA65_RS07290	0.61	-0.0
1,516,975	+		DZA65_RS07290	0.61	-0.7
1,516,976	-		DZA65_RS07290	0.61	-0.0
1,516,976	-		DZA65_RS07290	0.61	-0.6
1,516,999	-		DZA65_RS07290	0.63	+1.0
1,517,031	-		DZA65_RS07290	0.66	-0.4
1,517,031	-		DZA65_RS07290	0.66	+1.6
1,517,031	-		DZA65_RS07290	0.66	-0.5
1,517,031	-		DZA65_RS07290	0.66	-0.6
1,517,031	-		DZA65_RS07290	0.66	-0.9
1,517,133	+		DZA65_RS07290	0.74	-0.0
1,517,133	+		DZA65_RS07290	0.74	+1.0
1,517,134	-		DZA65_RS07290	0.74	-0.0
1,517,134	-		DZA65_RS07290	0.74	+0.3
1,517,176	+		DZA65_RS07290	0.77	-0.3
1,517,176	+				-0.0
1,517,176	+		DZA65_RS07290	0.77	-1.3
1,517,177	-		DZA65_RS07290	0.77	-0.4
1,517,177	-		DZA65_RS07290	0.77	+1.6
1,517,177	-		DZA65_RS07290	0.77	-0.0
1,517,177	-		DZA65_RS07290	0.77	-1.2
1,517,192	+		DZA65_RS07290	0.78	+1.0
1,517,199	+		DZA65_RS07290	0.79	-0.1
1,517,199	+		DZA65_RS07290	0.79	+0.7
1,517,200	-		DZA65_RS07290	0.79	-0.6
1,517,306	+		DZA65_RS07290	0.87	+0.5
1,517,353	-				+0.6
1,517,359	+				-0.6
1,517,360	-				-0.9
1,517,374	+				+0.2
1,517,398	+				+0.1
1,517,398	+				+0.1
1,517,398	+				+0.7
1,517,398	+				-0.2
1,517,398	+				-0.9
1,517,398	+				-0.6
1,517,398	+				+1.0
1,517,398	+				+0.4
1,517,399	-				-0.3
1,517,399	-				+1.0
1,517,399	-				-0.9
1,517,399	-				+1.0
1,517,399	-				+0.6
1,517,399	-				+1.0
1,517,399	-				+1.0
1,517,399	-				-0.9
1,517,399	-				-0.3
1,517,399	-				+0.1
1,517,399	-				-0.0
1,517,399	-				-1.3
1,517,399	-				-1.6
1,517,400	+				+1.0
1,517,400	+				-1.2
1,517,401	-				-0.0
1,517,401	-				-0.3
1,517,434	+				+0.2
1,517,434	+				+0.8
1,517,434	+				-1.8
1,517,434	+				-0.0
1,517,434	+				-1.8
1,517,435	-				+1.0
1,517,435	-				-0.6
1,517,435	-				-0.6
1,517,435	-				-0.8
1,517,435	-				+1.0
1,517,435	-				-0.8
1,517,442	-				-0.0
1,517,465	+				-1.7
1,517,553	-				+0.6
1,517,553	-				-1.2
1,517,564	+				-0.0
1,517,564	+				+0.3
1,517,564	+				+0.1
1,517,564	+				-0.0
1,517,567	+				-0.6
1,517,568	-				+0.6
1,517,568	-				+0.1
1,517,607	+				-0.0
1,517,608	-				+0.1
1,517,640	+				+0.4
1,517,641	-				-0.6
1,517,641	-				-0.4
1,517,673	-				-1.6
1,517,767	+		DZA65_RS07295	0.14	+1.0
1,517,832	-		DZA65_RS07295	0.21	-0.6
1,517,858	+		DZA65_RS07295	0.24	-0.2
1,517,859	-		DZA65_RS07295	0.24	-0.4
1,517,859	-		DZA65_RS07295	0.24	+0.5
1,517,859	-		DZA65_RS07295	0.24	-1.2
1,517,860	+		DZA65_RS07295	0.24	+0.6
1,517,861	-		DZA65_RS07295	0.24	-0.0
1,517,932	+		DZA65_RS07295	0.32	+0.1
1,517,932	+		DZA65_RS07295	0.32	+1.0
1,517,932	+		DZA65_RS07295	0.32	-0.0
1,517,932	+		DZA65_RS07295	0.32	+0.7
1,517,932	+		DZA65_RS07295	0.32	+1.7
1,517,932	+		DZA65_RS07295	0.32	-0.9
1,517,932	+		DZA65_RS07295	0.32	+1.2
1,517,932	+		DZA65_RS07295	0.32	-1.6
1,517,932	+		DZA65_RS07295	0.32	-0.2
1,517,932	+		DZA65_RS07295	0.32	-0.0
1,517,932	+		DZA65_RS07295	0.32	+0.4
1,517,933	-		DZA65_RS07295	0.32	-1.8
1,517,933	-		DZA65_RS07295	0.32	-0.0
1,517,933	-		DZA65_RS07295	0.32	-0.0
1,517,933	-		DZA65_RS07295	0.32	-0.7
1,517,933	-		DZA65_RS07295	0.32	-0.1
1,517,938	+		DZA65_RS07295	0.33	-0.1
1,517,938	+		DZA65_RS07295	0.33	-1.5
1,517,938	+		DZA65_RS07295	0.33	-0.4
1,517,938	+		DZA65_RS07295	0.33	-0.6
1,517,938	+		DZA65_RS07295	0.33	-0.0
1,517,939	-		DZA65_RS07295	0.33	-1.8
1,517,939	-		DZA65_RS07295	0.33	-0.0
1,517,939	-		DZA65_RS07295	0.33	+1.2
1,517,939	-		DZA65_RS07295	0.33	-0.2
1,518,106	+		DZA65_RS07295	0.52	-1.0
1,518,106	+		DZA65_RS07295	0.52	+0.5
1,518,120	-		DZA65_RS07295	0.53	+1.4
1,518,158	+		DZA65_RS07295	0.57	-0.4
1,518,251	+		DZA65_RS07295	0.68	-0.7
1,518,251	+		DZA65_RS07295	0.68	-2.0
1,518,251	+		DZA65_RS07295	0.68	-2.5
1,518,252	-		DZA65_RS07295	0.68	-0.5
1,518,252	-		DZA65_RS07295	0.68	+1.6
1,518,252	-		DZA65_RS07295	0.68	-0.4
1,518,253	+		DZA65_RS07295	0.68	+0.4
1,518,253	+		DZA65_RS07295	0.68	-0.6
1,518,253	+		DZA65_RS07295	0.68	+2.6
1,518,253	+		DZA65_RS07295	0.68	-0.0
1,518,253	+		DZA65_RS07295	0.68	+0.4
1,518,253	+		DZA65_RS07295	0.68	-0.3
1,518,254	-		DZA65_RS07295	0.68	-0.5
1,518,254	-		DZA65_RS07295	0.68	+1.0
1,518,254	-		DZA65_RS07295	0.68	+0.8
1,518,254	-		DZA65_RS07295	0.68	-0.0
1,518,254	-				-0.6
1,518,254	-		DZA65_RS07295	0.68	+0.5
1,518,274	-		DZA65_RS07295	0.70	-1.5
1,518,274	-		DZA65_RS07295	0.70	-1.3
1,518,376	+		DZA65_RS07295	0.82	-0.0
1,518,376	+		DZA65_RS07295	0.82	-0.7
1,518,376	+		DZA65_RS07295	0.82	-1.0
1,518,376	+		DZA65_RS07295	0.82	+0.4
1,518,377	-		DZA65_RS07295	0.82	-0.0
1,518,445	+		DZA65_RS07295	0.90	+0.6
1,518,453	+				-0.6
1,518,454	-				-0.6
1,518,470	+				-1.6
1,518,470	+				-0.0
1,518,470	+				-1.6
1,518,470	+				-0.6