Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21965

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	3.75mM_PTB
				remove
4,749,113	+	DZA65_RS21955	0.73	+0.8
4,749,114	-	DZA65_RS21955	0.73	-0.1
4,749,114	-	DZA65_RS21955	0.73	-1.0
4,749,116	-	DZA65_RS21955	0.74	+0.0
4,749,116	-	DZA65_RS21955	0.74	-0.9
4,749,116	-	DZA65_RS21955	0.74	-0.6
4,749,164	+	DZA65_RS21955	0.85	-0.5
4,749,165	-	DZA65_RS21955	0.86	+0.2
4,749,218	+			-0.5
4,749,218	+			+0.3
4,749,219	-			-0.0
4,749,225	-			-0.4
4,749,300	+			-0.4
4,749,301	-			+0.9
4,749,301	-			-0.3
4,749,301	-			+0.3
4,749,301	-			+0.9
4,749,301	-			+0.5
4,749,301	-			-0.7
4,749,301	-			-0.5
4,749,301	-			+1.2
4,749,301	-			-0.1
4,749,313	+			-0.4
4,749,314	-			-0.7
4,749,338	-			-1.0
4,749,385	-			-0.1
4,749,406	+			-0.5
4,749,406	+			-0.6
4,749,406	+			-0.3
4,749,406	+			+0.3
4,749,406	+			-1.5
4,749,407	-			+0.6
4,749,414	+			-1.1
4,749,414	+			+1.0
4,749,414	+			+0.0
4,749,414	+			-0.6
4,749,414	+			-1.1
4,749,414	+			-0.1
4,749,414	+			-0.6
4,749,414	+			-1.0
4,749,414	+			+0.3
4,749,414	+			+0.9
4,749,415	-			+0.4
4,749,415	-			+0.3
4,749,415	-			+0.1
4,749,415	-			-0.6
4,749,415	-			+1.2
4,749,415	-			-0.4
4,749,415	-			-0.3
4,749,415	-			-1.4
4,749,415	-			+0.7
4,749,415	-			-0.1
4,749,415	-			+0.3
4,749,445	+			-0.9
4,749,465	+			-1.8
4,749,465	+			-0.6
4,749,465	+			-1.4
4,749,465	+			+1.2
4,749,466	-			+1.2
4,749,466	-			-0.6
4,749,519	+			-0.2
4,749,519	+			-0.2
4,749,520	-			+1.7
4,749,533	+			+1.2
4,749,634	+	DZA65_RS21960	0.30	-0.1
4,749,638	-	DZA65_RS21960	0.31	+1.6
4,749,638	-	DZA65_RS21960	0.31	-2.3
4,749,638	-	DZA65_RS21960	0.31	+0.1
4,749,707	+	DZA65_RS21960	0.49	-1.1
4,749,708	-	DZA65_RS21960	0.49	-0.7
4,749,757	+	DZA65_RS21960	0.62	+0.9
4,749,757	+	DZA65_RS21960	0.62	+1.1
4,749,758	-	DZA65_RS21960	0.63	+1.5
4,749,763	+	DZA65_RS21960	0.64	-0.3
4,749,763	+	DZA65_RS21960	0.64	+0.6
4,749,763	+			-0.7
4,749,763	+	DZA65_RS21960	0.64	+0.9
4,749,763	+	DZA65_RS21960	0.64	+1.0
4,749,763	+	DZA65_RS21960	0.64	-1.0
4,749,763	+	DZA65_RS21960	0.64	+0.4
4,749,763	+	DZA65_RS21960	0.64	-0.1
4,749,763	+	DZA65_RS21960	0.64	-0.9
4,749,764	-	DZA65_RS21960	0.64	-0.4
4,749,764	-	DZA65_RS21960	0.64	-0.1
4,749,764	-	DZA65_RS21960	0.64	-1.7
4,749,764	-	DZA65_RS21960	0.64	-1.3
4,749,764	-	DZA65_RS21960	0.64	+1.9
4,749,766	+	DZA65_RS21960	0.65	-0.7
4,749,792	+	DZA65_RS21960	0.72	+0.3
4,749,792	+	DZA65_RS21960	0.72	+0.9
4,749,792	+	DZA65_RS21960	0.72	+0.3
4,749,792	+	DZA65_RS21960	0.72	-2.0
4,749,792	+	DZA65_RS21960	0.72	-0.1
4,749,792	+	DZA65_RS21960	0.72	+0.2
4,749,793	-	DZA65_RS21960	0.72	+0.7
4,749,793	-	DZA65_RS21960	0.72	-1.1
4,749,793	-	DZA65_RS21960	0.72	-0.1
4,749,793	-	DZA65_RS21960	0.72	-1.1
4,749,793	-	DZA65_RS21960	0.72	+0.6
4,749,793	-	DZA65_RS21960	0.72	-1.5
4,749,820	+	DZA65_RS21960	0.79	-0.1
4,749,820	+	DZA65_RS21960	0.79	-0.1
4,749,820	+	DZA65_RS21960	0.79	-1.3
4,749,820	+	DZA65_RS21960	0.79	-1.0
4,749,821	-	DZA65_RS21960	0.79	-0.0
4,749,821	-	DZA65_RS21960	0.79	-1.5
4,749,882	+			-0.5
4,749,882	+			-0.1
4,749,921	-			-0.7
4,749,944	+			+0.3
4,749,952	+			-0.0
4,749,952	+			-1.7
4,749,953	-			-0.1
4,749,953	-			+0.4
4,749,953	-			-1.1
4,749,976	-			-0.5
4,749,987	+			+0.3
4,749,987	+			+1.1
4,749,987	+			+0.4
4,749,988	-			+0.6
4,749,988	-			-0.1
4,749,988	-			+0.2
4,749,988	-			-1.5
4,749,988	-			-0.4
4,749,988	-			-1.7
4,750,017	+			+0.2
4,750,017	+			-0.8
4,750,018	-			+1.2
4,750,018	-			+1.1
4,750,310	+	DZA65_RS21965	0.22	-0.5
4,750,310	+	DZA65_RS21965	0.22	-0.1
4,750,311	-	DZA65_RS21965	0.22	+0.9
4,750,311	-	DZA65_RS21965	0.22	+0.7
4,750,352	+	DZA65_RS21965	0.25	+0.0
4,750,352	+	DZA65_RS21965	0.25	+0.1
4,750,352	+	DZA65_RS21965	0.25	+1.6
4,750,352	+	DZA65_RS21965	0.25	-0.7
4,750,352	+	DZA65_RS21965	0.25	-2.1
4,750,352	+	DZA65_RS21965	0.25	-0.6
4,750,353	-	DZA65_RS21965	0.25	-1.1
4,750,353	-	DZA65_RS21965	0.25	+0.9
4,750,353	-	DZA65_RS21965	0.25	-1.6
4,750,353	-	DZA65_RS21965	0.25	+0.7
4,750,353	-	DZA65_RS21965	0.25	-0.9
4,750,353	-	DZA65_RS21965	0.25	-0.7
4,750,353	-	DZA65_RS21965	0.25	+1.7
4,750,353	-	DZA65_RS21965	0.25	-0.4
4,750,353	-	DZA65_RS21965	0.25	+0.0
4,750,353	-	DZA65_RS21965	0.25	-2.2
4,750,353	-	DZA65_RS21965	0.25	-1.7
4,750,353	-	DZA65_RS21965	0.25	+0.9
4,750,353	-	DZA65_RS21965	0.25	-0.7
4,750,353	-	DZA65_RS21965	0.25	+0.5
4,750,353	-	DZA65_RS21965	0.25	-1.3
4,750,353	-	DZA65_RS21965	0.25	-1.0
4,750,353	-	DZA65_RS21965	0.25	-0.5
4,750,398	+	DZA65_RS21965	0.28	-0.4
4,750,398	+	DZA65_RS21965	0.28	-0.1
4,750,399	-	DZA65_RS21965	0.28	+0.5
4,750,399	-	DZA65_RS21965	0.28	+0.4
4,750,399	-	DZA65_RS21965	0.28	-1.5
4,750,399	-	DZA65_RS21965	0.28	-1.1
4,750,399	-	DZA65_RS21965	0.28	-2.5
4,750,401	-	DZA65_RS21965	0.28	-0.5
4,750,519	+	DZA65_RS21965	0.37	-0.7
4,750,519	+	DZA65_RS21965	0.37	-0.3
4,750,519	+	DZA65_RS21965	0.37	-0.4
4,750,519	+	DZA65_RS21965	0.37	-0.2
4,750,519	+	DZA65_RS21965	0.37	-0.5
4,750,519	+	DZA65_RS21965	0.37	-2.0
4,750,520	-	DZA65_RS21965	0.37	+0.2
4,750,520	-	DZA65_RS21965	0.37	-0.7
4,750,520	-	DZA65_RS21965	0.37	-0.3
4,750,520	-	DZA65_RS21965	0.37	-0.3
4,750,520	-	DZA65_RS21965	0.37	+0.9
4,750,520	-	DZA65_RS21965	0.37	-1.7
4,750,529	+	DZA65_RS21965	0.38	-1.6
4,750,530	-	DZA65_RS21965	0.38	-1.0
4,750,728	+	DZA65_RS21965	0.53	+0.3
4,750,728	+	DZA65_RS21965	0.53	-0.5
4,750,728	+	DZA65_RS21965	0.53	+0.3
4,750,728	+	DZA65_RS21965	0.53	-0.1
4,750,728	+	DZA65_RS21965	0.53	-1.1
4,750,728	+	DZA65_RS21965	0.53	+0.1
4,750,728	+	DZA65_RS21965	0.53	-0.4
4,750,729	-	DZA65_RS21965	0.53	-0.3
4,750,729	-	DZA65_RS21965	0.53	-0.7
4,750,729	-	DZA65_RS21965	0.53	-0.7
4,750,729	-			-1.3
4,750,729	-	DZA65_RS21965	0.53	+0.3
4,750,730	+	DZA65_RS21965	0.53	-1.1
4,750,730	+	DZA65_RS21965	0.53	-0.4
4,750,730	+	DZA65_RS21965	0.53	-0.7
4,750,730	+	DZA65_RS21965	0.53	-1.3
4,750,730	+	DZA65_RS21965	0.53	+0.3
4,750,730	+	DZA65_RS21965	0.53	-0.6
4,750,730	+	DZA65_RS21965	0.53	-0.1
4,750,730	+	DZA65_RS21965	0.53	-0.7
4,750,730	+	DZA65_RS21965	0.53	-1.0
4,750,730	+	DZA65_RS21965	0.53	-0.7
4,750,730	+	DZA65_RS21965	0.53	-0.6
4,750,730	+	DZA65_RS21965	0.53	-0.9
4,750,730	+	DZA65_RS21965	0.53	-0.1
4,750,730	+	DZA65_RS21965	0.53	+0.0
4,750,730	+	DZA65_RS21965	0.53	+0.6
4,750,730	+	DZA65_RS21965	0.53	-0.5
4,750,731	-	DZA65_RS21965	0.53	+0.4
4,750,731	-	DZA65_RS21965	0.53	+0.6
4,750,731	-	DZA65_RS21965	0.53	-2.0
4,750,731	-	DZA65_RS21965	0.53	+1.1
4,750,731	-	DZA65_RS21965	0.53	+1.3
4,750,731	-	DZA65_RS21965	0.53	-0.4
4,750,731	-	DZA65_RS21965	0.53	-0.7
4,750,731	-	DZA65_RS21965	0.53	+0.4
4,750,731	-	DZA65_RS21965	0.53	-0.8
4,750,731	-	DZA65_RS21965	0.53	-0.9
4,750,731	-	DZA65_RS21965	0.53	-0.0
4,750,731	-	DZA65_RS21965	0.53	-2.1
4,750,731	-	DZA65_RS21965	0.53	-0.5
4,750,731	-	DZA65_RS21965	0.53	+0.2
4,750,731	-	DZA65_RS21965	0.53	-2.0
4,750,731	-	DZA65_RS21965	0.53	+1.6
4,750,819	+	DZA65_RS21965	0.59	-1.0
4,750,819	+	DZA65_RS21965	0.59	+0.4
4,750,819	+	DZA65_RS21965	0.59	-0.3
4,750,819	+	DZA65_RS21965	0.59	-0.3
4,750,819	+	DZA65_RS21965	0.59	+0.4
4,750,820	-	DZA65_RS21965	0.59	-0.1
4,750,820	-	DZA65_RS21965	0.59	-0.1
4,750,820	-	DZA65_RS21965	0.59	-0.4
4,751,018	+	DZA65_RS21965	0.74	+0.0
4,751,018	+	DZA65_RS21965	0.74	-0.9
4,751,018	+	DZA65_RS21965	0.74	-0.5
4,751,018	+	DZA65_RS21965	0.74	-1.0
4,751,018	+	DZA65_RS21965	0.74	-0.3
4,751,018	+	DZA65_RS21965	0.74	-0.1
4,751,019	-	DZA65_RS21965	0.74	+0.3
4,751,019	-	DZA65_RS21965	0.74	-1.1
4,751,246	+			+0.7
4,751,261	+			-0.3
4,751,345	-			+0.4
4,751,345	-			+0.9
4,751,379	+			-1.6
4,751,387	+			-0.7
4,751,423	+			-0.7
4,751,423	+			+0.5
4,751,446	+			-0.7
4,751,446	+			-0.7
4,751,446	+			+1.2
4,751,446	+			-0.1
4,751,446	+			-1.5
4,751,447	-			+0.5
4,751,447	-			-1.0
4,751,447	-			-0.4
4,751,452	-			+0.0
4,751,480	-			-0.1
4,751,490	+			+1.9
4,751,490	+			-2.1
4,751,490	+			-0.7
4,751,491	-			+2.2
4,751,503	+			-1.0
4,751,541	+			+0.3
4,751,541	+			-0.4
4,751,541	+			-0.1
4,751,541	+			-0.5
4,751,541	+			-1.3
4,751,541	+			-2.3
4,751,541	+			+0.9
4,751,541	+			-0.5
4,751,541	+			-0.1
4,751,541	+			-2.3
4,751,541	+			-1.1
4,751,541	+			-1.1
4,751,541	+			-0.4
4,751,541	+			+0.9
4,751,541	+			-0.7
4,751,541	+			+0.3
4,751,541	+			-0.9
4,751,541	+			+0.2
4,751,541	+			+0.3
4,751,541	+			-0.2
4,751,541	+			-0.3
4,751,541	+			-1.5
4,751,541	+			-1.2
4,751,541	+			-0.7
4,751,541	+			-0.1
4,751,542	-			-1.3
4,751,542	-			-0.9
4,751,542	-			+0.5
4,751,542	-			-0.1
4,751,542	-			-2.1
4,751,542	-			-0.1
4,751,542	-			-1.0
4,751,542	-			+0.3
4,751,542	-			-1.0
4,751,542	-			+1.9
4,751,542	-			-1.6
4,751,542	-			+0.2
4,751,542	-			-1.5
4,751,542	-			-0.7
4,751,542	-			+0.0
4,751,542	-			-1.1
4,751,542	-			-0.1
4,751,542	-			+0.9
4,751,542	-			-0.0
4,751,558	+			-0.1
4,751,558	+			-0.7
4,751,559	-			-0.9
4,751,561	+			+0.6
4,751,561	+			-0.7
4,751,561	+			-0.7
4,751,561	+			-0.5
4,751,561	+			-0.8
4,751,561	+			-1.0
4,751,562	-			+0.6
4,751,573	-			-0.8
4,751,606	+			+0.3
4,751,606	+			-0.0
4,751,606	+			+0.9
4,751,606	+			+0.4
4,751,606	+			-1.1
4,751,606	+			-0.4
4,751,607	-			+0.6
4,751,607	-			-1.0
4,751,607	-			-0.4
4,751,607	-			-0.7
4,751,636	+			-2.1
4,751,636	+			+0.9
4,751,636	+			-0.7
4,751,636	+			+1.9
4,751,637	-			-0.1
4,751,637	-			-0.3
4,751,637	-			+0.4
4,751,688	-			-0.3
4,751,715	+			-1.3
4,751,716	-			+0.5
4,751,716	-			+0.0
4,751,716	-			-0.5
4,751,812	+	DZA65_RS21970	0.18	-0.3
4,751,879	+	DZA65_RS21970	0.49	+0.1
4,751,879	+	DZA65_RS21970	0.49	-0.1
4,751,880	-	DZA65_RS21970	0.49	+0.9
4,751,880	-	DZA65_RS21970	0.49	+0.9
4,751,880	-	DZA65_RS21970	0.49	+0.3
4,751,896	+	DZA65_RS21970	0.57	+0.4
4,751,897	-	DZA65_RS21970	0.57	+0.3
4,751,928	-	DZA65_RS21970	0.71	+1.9
4,751,928	-	DZA65_RS21970	0.71	+0.6
4,751,928	-	DZA65_RS21970	0.71	+0.0
4,751,931	+	DZA65_RS21970	0.73	-0.8
4,751,931	+	DZA65_RS21970	0.73	-1.2
4,751,932	-	DZA65_RS21970	0.73	-0.4
4,751,932	-	DZA65_RS21970	0.73	+0.2
4,751,932	-	DZA65_RS21970	0.73	+0.3
4,751,932	-	DZA65_RS21970	0.73	+0.4
4,751,932	-	DZA65_RS21970	0.73	+1.9
4,751,932	-	DZA65_RS21970	0.73	+0.9
4,751,933	+	DZA65_RS21970	0.74	+0.6
4,751,933	+	DZA65_RS21970	0.74	+0.3
4,751,933	+	DZA65_RS21970	0.74	+0.4
4,751,934	-	DZA65_RS21970	0.74	+0.4
4,751,960	+	DZA65_RS21970	0.86	-0.0
4,751,960	+	DZA65_RS21970	0.86	-0.6
4,751,960	+	DZA65_RS21970	0.86	+0.3
4,751,961	-	DZA65_RS21970	0.86	+0.6
4,751,961	-	DZA65_RS21970	0.86	-1.0
4,751,961	-	DZA65_RS21970	0.86	+0.2
4,751,961	-	DZA65_RS21970	0.86	+0.3
4,752,012	+			+0.5
4,752,028	-			-1.0
4,752,061	-			-1.1
4,752,061	-			+0.1
4,752,074	-			+0.0
4,752,092	+			-1.5
4,752,093	-			-0.5
4,752,118	+			-0.8
4,752,119	-			+1.2
4,752,119	-			+0.9
4,752,119	-			-0.6
4,752,119	-			+0.2
4,752,119	-			-1.0
4,752,160	+			-2.1
4,752,160	+			-1.1
4,752,203	+			+0.9
4,752,308	+	DZA65_RS21975	0.31	+0.2
4,752,308	+	DZA65_RS21975	0.31	+0.9
4,752,308	+	DZA65_RS21975	0.31	-0.7
4,752,308	+	DZA65_RS21975	0.31	-0.9
4,752,308	+	DZA65_RS21975	0.31	-1.1
4,752,308	+	DZA65_RS21975	0.31	+0.9
4,752,308	+	DZA65_RS21975	0.31	-0.7
4,752,308	+	DZA65_RS21975	0.31	-1.6
4,752,308	+	DZA65_RS21975	0.31	+0.3
4,752,309	-	DZA65_RS21975	0.32	-0.7
4,752,309	-	DZA65_RS21975	0.32	-1.7
4,752,309	-	DZA65_RS21975	0.32	-0.7
4,752,309	-	DZA65_RS21975	0.32	-0.8
4,752,309	-	DZA65_RS21975	0.32	+0.9
4,752,309	-	DZA65_RS21975	0.32	-1.5
4,752,309	-	DZA65_RS21975	0.32	+0.2
4,752,309	-	DZA65_RS21975	0.32	+0.2
4,752,309	-	DZA65_RS21975	0.32	+3.2
4,752,309	-	DZA65_RS21975	0.32	+0.4

Or see this region's nucleotide sequence