Experiment: 3.75mM_PTB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02040 and DZA65_RS02045 are separated by 52 nucleotides DZA65_RS02045 and DZA65_RS02050 are separated by 715 nucleotides
DZA65_RS02040: DZA65_RS02040 - carbamate kinase, at 447,951 to 448,880
_RS02040
DZA65_RS02045: DZA65_RS02045 - arginine deiminase, at 448,933 to 450,153
_RS02045
DZA65_RS02050: DZA65_RS02050 - valine--tRNA ligase, at 450,869 to 453,739
_RS02050
Position (kb) 448
449
450
451 Strain fitness (log2 ratio) -2
-1
0
1
2 at 447.948 kb on + strand at 447.948 kb on + strand at 447.948 kb on + strand at 447.949 kb on - strand at 447.949 kb on - strand at 447.952 kb on + strand at 447.952 kb on + strand at 447.952 kb on + strand at 447.953 kb on - strand at 447.953 kb on - strand at 447.953 kb on - strand at 447.971 kb on + strand at 448.043 kb on + strand at 448.131 kb on + strand, within DZA65_RS02040 at 448.132 kb on - strand, within DZA65_RS02040 at 448.165 kb on + strand, within DZA65_RS02040 at 448.165 kb on + strand, within DZA65_RS02040 at 448.165 kb on + strand, within DZA65_RS02040 at 448.166 kb on - strand, within DZA65_RS02040 at 448.190 kb on + strand, within DZA65_RS02040 at 448.190 kb on + strand, within DZA65_RS02040 at 448.190 kb on + strand, within DZA65_RS02040 at 448.191 kb on - strand, within DZA65_RS02040 at 448.191 kb on - strand, within DZA65_RS02040 at 448.191 kb on - strand, within DZA65_RS02040 at 448.191 kb on - strand, within DZA65_RS02040 at 448.209 kb on + strand, within DZA65_RS02040 at 448.209 kb on + strand, within DZA65_RS02040 at 448.209 kb on + strand, within DZA65_RS02040 at 448.210 kb on - strand, within DZA65_RS02040 at 448.245 kb on - strand, within DZA65_RS02040 at 448.245 kb on - strand, within DZA65_RS02040 at 448.371 kb on + strand, within DZA65_RS02040 at 448.372 kb on - strand, within DZA65_RS02040 at 448.372 kb on - strand, within DZA65_RS02040 at 448.465 kb on + strand, within DZA65_RS02040 at 448.466 kb on - strand, within DZA65_RS02040 at 448.478 kb on - strand, within DZA65_RS02040 at 448.490 kb on + strand, within DZA65_RS02040 at 448.492 kb on + strand, within DZA65_RS02040 at 448.492 kb on + strand, within DZA65_RS02040 at 448.492 kb on + strand, within DZA65_RS02040 at 448.492 kb on + strand, within DZA65_RS02040 at 448.492 kb on + strand, within DZA65_RS02040 at 448.492 kb on + strand, within DZA65_RS02040 at 448.493 kb on - strand, within DZA65_RS02040 at 448.493 kb on - strand, within DZA65_RS02040 at 448.493 kb on - strand, within DZA65_RS02040 at 448.493 kb on - strand, within DZA65_RS02040 at 448.553 kb on + strand, within DZA65_RS02040 at 448.554 kb on - strand, within DZA65_RS02040 at 448.554 kb on - strand, within DZA65_RS02040 at 448.637 kb on + strand, within DZA65_RS02040 at 448.638 kb on - strand, within DZA65_RS02040 at 448.681 kb on - strand, within DZA65_RS02040 at 448.722 kb on + strand, within DZA65_RS02040 at 448.722 kb on + strand, within DZA65_RS02040 at 448.723 kb on - strand, within DZA65_RS02040 at 448.723 kb on - strand, within DZA65_RS02040 at 448.773 kb on - strand, within DZA65_RS02040 at 448.775 kb on + strand, within DZA65_RS02040 at 448.775 kb on + strand at 448.775 kb on + strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.776 kb on - strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.778 kb on + strand, within DZA65_RS02040 at 448.779 kb on - strand, within DZA65_RS02040 at 448.779 kb on - strand, within DZA65_RS02040 at 448.779 kb on - strand, within DZA65_RS02040 at 448.779 kb on - strand, within DZA65_RS02040 at 448.779 kb on - strand, within DZA65_RS02040 at 448.779 kb on - strand, within DZA65_RS02040 at 448.779 kb on - strand, within DZA65_RS02040 at 448.893 kb on + strand at 448.910 kb on + strand at 448.910 kb on + strand at 448.910 kb on + strand at 448.910 kb on + strand at 448.911 kb on - strand at 448.938 kb on + strand at 448.938 kb on + strand at 448.938 kb on + strand at 449.022 kb on + strand at 449.022 kb on + strand at 449.023 kb on - strand at 449.023 kb on - strand at 449.023 kb on - strand at 449.039 kb on + strand at 449.059 kb on - strand, within DZA65_RS02045 at 449.059 kb on - strand, within DZA65_RS02045 at 449.181 kb on + strand, within DZA65_RS02045 at 449.233 kb on + strand, within DZA65_RS02045 at 449.233 kb on + strand, within DZA65_RS02045 at 449.234 kb on - strand, within DZA65_RS02045 at 449.310 kb on + strand at 449.311 kb on - strand, within DZA65_RS02045 at 449.311 kb on - strand, within DZA65_RS02045 at 449.311 kb on - strand, within DZA65_RS02045 at 449.322 kb on + strand, within DZA65_RS02045 at 449.322 kb on + strand, within DZA65_RS02045 at 449.323 kb on - strand, within DZA65_RS02045 at 449.323 kb on - strand, within DZA65_RS02045 at 449.349 kb on + strand, within DZA65_RS02045 at 449.349 kb on + strand, within DZA65_RS02045 at 449.349 kb on + strand, within DZA65_RS02045 at 449.349 kb on + strand, within DZA65_RS02045 at 449.350 kb on - strand, within DZA65_RS02045 at 449.410 kb on + strand, within DZA65_RS02045 at 449.410 kb on + strand, within DZA65_RS02045 at 449.410 kb on + strand, within DZA65_RS02045 at 449.410 kb on + strand, within DZA65_RS02045 at 449.411 kb on - strand, within DZA65_RS02045 at 449.411 kb on - strand, within DZA65_RS02045 at 449.494 kb on + strand, within DZA65_RS02045 at 449.494 kb on + strand, within DZA65_RS02045 at 449.495 kb on - strand, within DZA65_RS02045 at 449.495 kb on - strand, within DZA65_RS02045 at 449.495 kb on - strand, within DZA65_RS02045 at 449.495 kb on - strand, within DZA65_RS02045 at 449.509 kb on + strand at 449.509 kb on + strand, within DZA65_RS02045 at 449.510 kb on - strand, within DZA65_RS02045 at 449.525 kb on + strand, within DZA65_RS02045 at 449.529 kb on + strand, within DZA65_RS02045 at 449.530 kb on - strand, within DZA65_RS02045 at 449.530 kb on - strand, within DZA65_RS02045 at 449.549 kb on + strand, within DZA65_RS02045 at 449.549 kb on + strand, within DZA65_RS02045 at 449.550 kb on - strand, within DZA65_RS02045 at 449.556 kb on + strand, within DZA65_RS02045 at 449.591 kb on + strand, within DZA65_RS02045 at 449.592 kb on - strand, within DZA65_RS02045 at 449.661 kb on + strand, within DZA65_RS02045 at 449.661 kb on + strand, within DZA65_RS02045 at 449.664 kb on - strand, within DZA65_RS02045 at 449.664 kb on - strand, within DZA65_RS02045 at 449.664 kb on - strand, within DZA65_RS02045 at 449.751 kb on + strand, within DZA65_RS02045 at 449.751 kb on + strand, within DZA65_RS02045 at 449.751 kb on + strand, within DZA65_RS02045 at 449.752 kb on - strand, within DZA65_RS02045 at 449.754 kb on + strand, within DZA65_RS02045 at 449.754 kb on + strand, within DZA65_RS02045 at 449.780 kb on + strand, within DZA65_RS02045 at 449.781 kb on - strand, within DZA65_RS02045 at 449.810 kb on - strand, within DZA65_RS02045 at 449.897 kb on - strand, within DZA65_RS02045 at 449.897 kb on - strand, within DZA65_RS02045 at 449.953 kb on + strand, within DZA65_RS02045 at 449.984 kb on - strand, within DZA65_RS02045 at 450.029 kb on - strand, within DZA65_RS02045 at 450.031 kb on + strand, within DZA65_RS02045 at 450.031 kb on + strand, within DZA65_RS02045 at 450.111 kb on + strand at 450.140 kb on + strand at 450.217 kb on + strand at 450.251 kb on - strand at 450.251 kb on - strand at 450.251 kb on - strand at 450.261 kb on - strand at 450.554 kb on + strand at 450.641 kb on - strand at 450.645 kb on - strand at 450.647 kb on + strand at 450.721 kb on + strand at 450.722 kb on - strand at 450.722 kb on - strand at 450.722 kb on - strand at 450.778 kb on + strand at 450.828 kb on + strand at 450.870 kb on + strand at 450.870 kb on + strand at 450.870 kb on + strand at 450.870 kb on + strand at 450.870 kb on + strand at 450.871 kb on - strand at 450.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3.75mM_PTB remove 447,948 + +0.9 447,948 + +0.5 447,948 + -0.9 447,949 - -0.1 447,949 - +0.0 447,952 + +0.6 447,952 + -0.1 447,952 + +0.7 447,953 - -2.1 447,953 - -0.1 447,953 - +0.6 447,971 + -0.4 448,043 + -1.4 448,131 + DZA65_RS02040 0.19 +0.1 448,132 - DZA65_RS02040 0.19 -0.5 448,165 + DZA65_RS02040 0.23 -1.1 448,165 + DZA65_RS02040 0.23 +0.1 448,165 + DZA65_RS02040 0.23 +1.5 448,166 - DZA65_RS02040 0.23 -2.1 448,190 + DZA65_RS02040 0.26 -1.6 448,190 + DZA65_RS02040 0.26 -0.5 448,190 + DZA65_RS02040 0.26 -1.9 448,191 - DZA65_RS02040 0.26 -0.1 448,191 - DZA65_RS02040 0.26 -0.3 448,191 - DZA65_RS02040 0.26 +0.5 448,191 - DZA65_RS02040 0.26 -0.3 448,209 + DZA65_RS02040 0.28 +0.3 448,209 + DZA65_RS02040 0.28 -1.4 448,209 + DZA65_RS02040 0.28 -1.6 448,210 - DZA65_RS02040 0.28 -0.1 448,245 - DZA65_RS02040 0.32 -0.1 448,245 - DZA65_RS02040 0.32 -1.1 448,371 + DZA65_RS02040 0.45 -1.9 448,372 - DZA65_RS02040 0.45 -0.3 448,372 - DZA65_RS02040 0.45 +0.9 448,465 + DZA65_RS02040 0.55 +0.2 448,466 - DZA65_RS02040 0.55 +0.3 448,478 - DZA65_RS02040 0.57 +0.9 448,490 + DZA65_RS02040 0.58 +0.1 448,492 + DZA65_RS02040 0.58 +0.9 448,492 + DZA65_RS02040 0.58 -0.6 448,492 + DZA65_RS02040 0.58 -0.9 448,492 + DZA65_RS02040 0.58 -0.9 448,492 + DZA65_RS02040 0.58 -0.2 448,492 + DZA65_RS02040 0.58 +0.9 448,493 - DZA65_RS02040 0.58 +1.9 448,493 - DZA65_RS02040 0.58 +0.0 448,493 - DZA65_RS02040 0.58 +0.4 448,493 - DZA65_RS02040 0.58 -0.7 448,553 + DZA65_RS02040 0.65 +0.4 448,554 - DZA65_RS02040 0.65 +0.4 448,554 - DZA65_RS02040 0.65 -0.7 448,637 + DZA65_RS02040 0.74 +1.2 448,638 - DZA65_RS02040 0.74 +0.1 448,681 - DZA65_RS02040 0.78 -1.4 448,722 + DZA65_RS02040 0.83 -1.2 448,722 + DZA65_RS02040 0.83 +1.9 448,723 - DZA65_RS02040 0.83 +0.1 448,723 - DZA65_RS02040 0.83 +0.9 448,773 - DZA65_RS02040 0.88 -1.1 448,775 + DZA65_RS02040 0.89 -0.1 448,775 + +0.9 448,775 + DZA65_RS02040 0.89 -1.4 448,776 - DZA65_RS02040 0.89 -0.1 448,776 - DZA65_RS02040 0.89 +0.3 448,776 - DZA65_RS02040 0.89 +1.9 448,776 - DZA65_RS02040 0.89 -1.1 448,776 - DZA65_RS02040 0.89 -1.9 448,776 - DZA65_RS02040 0.89 -1.3 448,776 - DZA65_RS02040 0.89 +1.5 448,776 - DZA65_RS02040 0.89 +0.3 448,776 - DZA65_RS02040 0.89 +1.6 448,778 + DZA65_RS02040 0.89 +0.9 448,778 + DZA65_RS02040 0.89 -0.1 448,778 + DZA65_RS02040 0.89 +1.5 448,778 + DZA65_RS02040 0.89 -1.1 448,778 + DZA65_RS02040 0.89 -0.5 448,778 + DZA65_RS02040 0.89 +0.1 448,778 + DZA65_RS02040 0.89 -2.1 448,778 + DZA65_RS02040 0.89 -0.1 448,778 + DZA65_RS02040 0.89 -1.3 448,778 + DZA65_RS02040 0.89 +0.5 448,778 + DZA65_RS02040 0.89 -1.1 448,778 + DZA65_RS02040 0.89 -0.7 448,778 + DZA65_RS02040 0.89 +0.1 448,778 + DZA65_RS02040 0.89 -0.5 448,778 + DZA65_RS02040 0.89 +0.3 448,778 + DZA65_RS02040 0.89 +0.9 448,778 + DZA65_RS02040 0.89 +1.9 448,778 + DZA65_RS02040 0.89 +1.3 448,779 - DZA65_RS02040 0.89 -1.6 448,779 - DZA65_RS02040 0.89 +0.9 448,779 - DZA65_RS02040 0.89 -1.1 448,779 - DZA65_RS02040 0.89 -1.2 448,779 - DZA65_RS02040 0.89 -0.8 448,779 - DZA65_RS02040 0.89 -0.1 448,779 - DZA65_RS02040 0.89 +0.7 448,893 + +1.4 448,910 + -0.9 448,910 + -1.4 448,910 + -0.2 448,910 + -1.2 448,911 - +0.6 448,938 + +0.6 448,938 + -1.1 448,938 + -1.0 449,022 + +0.5 449,022 + -0.9 449,023 - -0.1 449,023 - +0.1 449,023 - -0.3 449,039 + +0.3 449,059 - DZA65_RS02045 0.10 +0.3 449,059 - DZA65_RS02045 0.10 -0.7 449,181 + DZA65_RS02045 0.20 -1.3 449,233 + DZA65_RS02045 0.25 -0.1 449,233 + DZA65_RS02045 0.25 +0.1 449,234 - DZA65_RS02045 0.25 -2.1 449,310 + +0.9 449,311 - DZA65_RS02045 0.31 -0.4 449,311 - DZA65_RS02045 0.31 -0.5 449,311 - DZA65_RS02045 0.31 -0.9 449,322 + DZA65_RS02045 0.32 -0.4 449,322 + DZA65_RS02045 0.32 +0.7 449,323 - DZA65_RS02045 0.32 -1.7 449,323 - DZA65_RS02045 0.32 -1.4 449,349 + DZA65_RS02045 0.34 +0.1 449,349 + DZA65_RS02045 0.34 -1.6 449,349 + DZA65_RS02045 0.34 -0.7 449,349 + DZA65_RS02045 0.34 -1.0 449,350 - DZA65_RS02045 0.34 +0.3 449,410 + DZA65_RS02045 0.39 -0.1 449,410 + DZA65_RS02045 0.39 -0.5 449,410 + DZA65_RS02045 0.39 +0.1 449,410 + DZA65_RS02045 0.39 +0.5 449,411 - DZA65_RS02045 0.39 +0.1 449,411 - DZA65_RS02045 0.39 -0.9 449,494 + DZA65_RS02045 0.46 -0.0 449,494 + DZA65_RS02045 0.46 -0.3 449,495 - DZA65_RS02045 0.46 -0.1 449,495 - DZA65_RS02045 0.46 -1.2 449,495 - DZA65_RS02045 0.46 -0.4 449,495 - DZA65_RS02045 0.46 -1.7 449,509 + +0.9 449,509 + DZA65_RS02045 0.47 -0.1 449,510 - DZA65_RS02045 0.47 -0.3 449,525 + DZA65_RS02045 0.48 -1.2 449,529 + DZA65_RS02045 0.49 +0.6 449,530 - DZA65_RS02045 0.49 -1.7 449,530 - DZA65_RS02045 0.49 -0.8 449,549 + DZA65_RS02045 0.50 +0.1 449,549 + DZA65_RS02045 0.50 -1.6 449,550 - DZA65_RS02045 0.51 +0.7 449,556 + DZA65_RS02045 0.51 +0.6 449,591 + DZA65_RS02045 0.54 -0.1 449,592 - DZA65_RS02045 0.54 -1.6 449,661 + DZA65_RS02045 0.60 -0.1 449,661 + DZA65_RS02045 0.60 -1.7 449,664 - DZA65_RS02045 0.60 +0.7 449,664 - DZA65_RS02045 0.60 -2.0 449,664 - DZA65_RS02045 0.60 -1.3 449,751 + DZA65_RS02045 0.67 +0.5 449,751 + DZA65_RS02045 0.67 -0.0 449,751 + DZA65_RS02045 0.67 -1.4 449,752 - DZA65_RS02045 0.67 -0.9 449,754 + DZA65_RS02045 0.67 +0.5 449,754 + DZA65_RS02045 0.67 -1.3 449,780 + DZA65_RS02045 0.69 -0.7 449,781 - DZA65_RS02045 0.69 +0.4 449,810 - DZA65_RS02045 0.72 -0.1 449,897 - DZA65_RS02045 0.79 -0.4 449,897 - DZA65_RS02045 0.79 +0.3 449,953 + DZA65_RS02045 0.84 -0.7 449,984 - DZA65_RS02045 0.86 -0.7 450,029 - DZA65_RS02045 0.90 -0.7 450,031 + DZA65_RS02045 0.90 -0.5 450,031 + DZA65_RS02045 0.90 +0.2 450,111 + -0.0 450,140 + +0.1 450,217 + -0.3 450,251 - +0.2 450,251 - -0.7 450,251 - -1.1 450,261 - -0.8 450,554 + +0.2 450,641 - +0.6 450,645 - -1.9 450,647 + -1.3 450,721 + -0.3 450,722 - -1.1 450,722 - -0.3 450,722 - -0.5 450,778 + -1.9 450,828 + -0.0 450,870 + +0.2 450,870 + -1.0 450,870 + -1.1 450,870 + -0.1 450,870 + +0.1 450,871 - +2.0 450,871 - -1.5
Or see this region's nucleotide sequence