Experiment: 1.88mM_PTB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04495 and DZA65_RS04500 are separated by 9 nucleotides DZA65_RS04500 and DZA65_RS04505 overlap by 4 nucleotides DZA65_RS04505 and DZA65_RS04510 are separated by 58 nucleotides
DZA65_RS04495: DZA65_RS04495 - ABC transporter ATP-binding protein, at 936,884 to 937,933
_RS04495
DZA65_RS04500: DZA65_RS04500 - carbohydrate ABC transporter permease, at 937,943 to 938,770
_RS04500
DZA65_RS04505: DZA65_RS04505 - sugar ABC transporter permease, at 938,767 to 939,639
_RS04505
DZA65_RS04510: DZA65_RS04510 - ABC transporter substrate-binding protein, at 939,698 to 941,002
_RS04510
Position (kb) 937
938
939 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 937.074 kb on + strand, within DZA65_RS04495 at 937.108 kb on + strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.344 kb on + strand, within DZA65_RS04495 at 937.344 kb on + strand, within DZA65_RS04495 at 937.344 kb on + strand, within DZA65_RS04495 at 937.344 kb on + strand, within DZA65_RS04495 at 937.345 kb on - strand, within DZA65_RS04495 at 937.345 kb on - strand, within DZA65_RS04495 at 937.345 kb on - strand, within DZA65_RS04495 at 937.345 kb on - strand, within DZA65_RS04495 at 937.399 kb on + strand, within DZA65_RS04495 at 937.443 kb on + strand, within DZA65_RS04495 at 937.443 kb on + strand, within DZA65_RS04495 at 937.443 kb on + strand, within DZA65_RS04495 at 937.443 kb on + strand, within DZA65_RS04495 at 937.444 kb on - strand, within DZA65_RS04495 at 937.444 kb on - strand, within DZA65_RS04495 at 937.444 kb on - strand, within DZA65_RS04495 at 937.444 kb on - strand, within DZA65_RS04495 at 937.621 kb on + strand, within DZA65_RS04495 at 937.622 kb on - strand, within DZA65_RS04495 at 937.622 kb on - strand, within DZA65_RS04495 at 937.675 kb on - strand, within DZA65_RS04495 at 937.683 kb on + strand, within DZA65_RS04495 at 937.684 kb on - strand, within DZA65_RS04495 at 937.736 kb on - strand, within DZA65_RS04495 at 937.736 kb on - strand, within DZA65_RS04495 at 937.916 kb on + strand at 937.916 kb on + strand at 937.916 kb on + strand at 937.917 kb on - strand at 937.917 kb on - strand at 937.917 kb on - strand at 937.922 kb on + strand at 937.922 kb on + strand at 937.923 kb on - strand at 937.923 kb on - strand at 937.923 kb on - strand at 937.923 kb on - strand at 937.944 kb on + strand at 937.944 kb on + strand at 937.944 kb on + strand at 937.945 kb on - strand at 937.945 kb on - strand at 937.945 kb on - strand at 937.945 kb on - strand at 937.945 kb on - strand at 937.977 kb on + strand at 937.977 kb on + strand at 937.978 kb on - strand at 937.978 kb on - strand at 937.978 kb on - strand at 937.978 kb on - strand at 937.978 kb on - strand at 938.052 kb on + strand, within DZA65_RS04500 at 938.052 kb on + strand at 938.053 kb on - strand, within DZA65_RS04500 at 938.053 kb on - strand, within DZA65_RS04500 at 938.121 kb on + strand, within DZA65_RS04500 at 938.121 kb on + strand, within DZA65_RS04500 at 938.121 kb on + strand, within DZA65_RS04500 at 938.121 kb on + strand, within DZA65_RS04500 at 938.121 kb on + strand, within DZA65_RS04500 at 938.122 kb on - strand, within DZA65_RS04500 at 938.122 kb on - strand, within DZA65_RS04500 at 938.122 kb on - strand, within DZA65_RS04500 at 938.215 kb on - strand, within DZA65_RS04500 at 938.215 kb on - strand, within DZA65_RS04500 at 938.287 kb on + strand, within DZA65_RS04500 at 938.323 kb on + strand, within DZA65_RS04500 at 938.324 kb on - strand, within DZA65_RS04500 at 938.324 kb on - strand, within DZA65_RS04500 at 938.325 kb on + strand, within DZA65_RS04500 at 938.325 kb on + strand, within DZA65_RS04500 at 938.325 kb on + strand, within DZA65_RS04500 at 938.325 kb on + strand, within DZA65_RS04500 at 938.325 kb on + strand, within DZA65_RS04500 at 938.325 kb on + strand, within DZA65_RS04500 at 938.326 kb on - strand, within DZA65_RS04500 at 938.326 kb on - strand, within DZA65_RS04500 at 938.326 kb on - strand, within DZA65_RS04500 at 938.334 kb on + strand, within DZA65_RS04500 at 938.334 kb on + strand, within DZA65_RS04500 at 938.335 kb on - strand, within DZA65_RS04500 at 938.392 kb on - strand, within DZA65_RS04500 at 938.392 kb on - strand, within DZA65_RS04500 at 938.558 kb on - strand, within DZA65_RS04500 at 938.558 kb on - strand, within DZA65_RS04500 at 938.560 kb on + strand, within DZA65_RS04500 at 938.560 kb on + strand, within DZA65_RS04500 at 938.668 kb on + strand, within DZA65_RS04500 at 938.668 kb on + strand, within DZA65_RS04500 at 938.668 kb on + strand, within DZA65_RS04500 at 938.715 kb on - strand at 938.741 kb on + strand at 938.741 kb on + strand at 938.742 kb on - strand at 938.742 kb on - strand at 938.742 kb on - strand at 938.742 kb on - strand at 938.804 kb on + strand at 938.804 kb on + strand at 938.894 kb on + strand, within DZA65_RS04505 at 938.894 kb on + strand, within DZA65_RS04505 at 938.894 kb on + strand, within DZA65_RS04505 at 938.894 kb on + strand, within DZA65_RS04505 at 938.894 kb on + strand, within DZA65_RS04505 at 938.894 kb on + strand, within DZA65_RS04505 at 938.894 kb on + strand, within DZA65_RS04505 at 938.894 kb on + strand, within DZA65_RS04505 at 938.894 kb on + strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand at 938.900 kb on + strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.952 kb on - strand, within DZA65_RS04505 at 938.952 kb on - strand, within DZA65_RS04505 at 938.976 kb on + strand, within DZA65_RS04505 at 939.007 kb on - strand, within DZA65_RS04505 at 939.007 kb on - strand, within DZA65_RS04505 at 939.007 kb on - strand, within DZA65_RS04505 at 939.038 kb on + strand, within DZA65_RS04505 at 939.038 kb on + strand, within DZA65_RS04505 at 939.039 kb on - strand, within DZA65_RS04505 at 939.039 kb on - strand, within DZA65_RS04505 at 939.039 kb on - strand, within DZA65_RS04505 at 939.109 kb on + strand, within DZA65_RS04505 at 939.125 kb on - strand, within DZA65_RS04505 at 939.189 kb on - strand, within DZA65_RS04505 at 939.240 kb on + strand, within DZA65_RS04505 at 939.241 kb on - strand, within DZA65_RS04505 at 939.241 kb on - strand, within DZA65_RS04505 at 939.241 kb on - strand, within DZA65_RS04505 at 939.260 kb on + strand, within DZA65_RS04505 at 939.292 kb on + strand, within DZA65_RS04505 at 939.292 kb on + strand, within DZA65_RS04505 at 939.292 kb on + strand, within DZA65_RS04505 at 939.293 kb on - strand, within DZA65_RS04505 at 939.317 kb on + strand, within DZA65_RS04505 at 939.479 kb on + strand, within DZA65_RS04505 at 939.480 kb on - strand, within DZA65_RS04505 at 939.518 kb on + strand, within DZA65_RS04505 at 939.539 kb on + strand, within DZA65_RS04505 at 939.539 kb on + strand, within DZA65_RS04505 at 939.540 kb on - strand, within DZA65_RS04505 at 939.540 kb on - strand, within DZA65_RS04505 at 939.564 kb on - strand at 939.577 kb on + strand at 939.577 kb on + strand at 939.699 kb on + strand at 939.699 kb on + strand at 939.699 kb on + strand at 939.700 kb on - strand at 939.700 kb on - strand at 939.707 kb on + strand at 939.708 kb on - strand at 939.708 kb on - strand at 939.708 kb on - strand at 939.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1.88mM_PTB remove 937,074 + DZA65_RS04495 0.18 +0.3 937,108 + DZA65_RS04495 0.21 +0.7 937,109 - DZA65_RS04495 0.21 -1.7 937,109 - DZA65_RS04495 0.21 +0.7 937,109 - DZA65_RS04495 0.21 +1.5 937,109 - DZA65_RS04495 0.21 -0.3 937,344 + DZA65_RS04495 0.44 +0.6 937,344 + DZA65_RS04495 0.44 +0.3 937,344 + DZA65_RS04495 0.44 +0.5 937,344 + DZA65_RS04495 0.44 +0.1 937,345 - DZA65_RS04495 0.44 +0.1 937,345 - DZA65_RS04495 0.44 +1.1 937,345 - DZA65_RS04495 0.44 +1.1 937,345 - DZA65_RS04495 0.44 -0.5 937,399 + DZA65_RS04495 0.49 -0.9 937,443 + DZA65_RS04495 0.53 -0.3 937,443 + DZA65_RS04495 0.53 -0.8 937,443 + DZA65_RS04495 0.53 +0.5 937,443 + DZA65_RS04495 0.53 -1.3 937,444 - DZA65_RS04495 0.53 -0.4 937,444 - DZA65_RS04495 0.53 -1.8 937,444 - DZA65_RS04495 0.53 +0.6 937,444 - DZA65_RS04495 0.53 +0.9 937,621 + DZA65_RS04495 0.70 -2.4 937,622 - DZA65_RS04495 0.70 +0.9 937,622 - DZA65_RS04495 0.70 +1.1 937,675 - DZA65_RS04495 0.75 -1.5 937,683 + DZA65_RS04495 0.76 -0.7 937,684 - DZA65_RS04495 0.76 +0.2 937,736 - DZA65_RS04495 0.81 +0.3 937,736 - DZA65_RS04495 0.81 -0.9 937,916 + +2.6 937,916 + -1.0 937,916 + -1.5 937,917 - -1.4 937,917 - +0.2 937,917 - -0.5 937,922 + +1.4 937,922 + -1.5 937,923 - -0.5 937,923 - -0.5 937,923 - +1.3 937,923 - +0.1 937,944 + +1.6 937,944 + +0.4 937,944 + +0.6 937,945 - -0.9 937,945 - -0.4 937,945 - -1.5 937,945 - -2.5 937,945 - +0.1 937,977 + -0.5 937,977 + -1.1 937,978 - -1.3 937,978 - -0.4 937,978 - +1.8 937,978 - -0.8 937,978 - +0.1 938,052 + DZA65_RS04500 0.13 -3.3 938,052 + +1.1 938,053 - DZA65_RS04500 0.13 -0.2 938,053 - DZA65_RS04500 0.13 +0.7 938,121 + DZA65_RS04500 0.21 -1.1 938,121 + DZA65_RS04500 0.21 +0.4 938,121 + DZA65_RS04500 0.21 +0.1 938,121 + DZA65_RS04500 0.21 +0.1 938,121 + DZA65_RS04500 0.21 +0.7 938,122 - DZA65_RS04500 0.22 +0.3 938,122 - DZA65_RS04500 0.22 -0.5 938,122 - DZA65_RS04500 0.22 +0.2 938,215 - DZA65_RS04500 0.33 -1.1 938,215 - DZA65_RS04500 0.33 +1.3 938,287 + DZA65_RS04500 0.42 +0.1 938,323 + DZA65_RS04500 0.46 +1.1 938,324 - DZA65_RS04500 0.46 +0.4 938,324 - DZA65_RS04500 0.46 +0.3 938,325 + DZA65_RS04500 0.46 -1.3 938,325 + DZA65_RS04500 0.46 +0.1 938,325 + DZA65_RS04500 0.46 -0.1 938,325 + DZA65_RS04500 0.46 +0.2 938,325 + DZA65_RS04500 0.46 +0.9 938,325 + DZA65_RS04500 0.46 +1.4 938,326 - DZA65_RS04500 0.46 +0.9 938,326 - DZA65_RS04500 0.46 -1.3 938,326 - DZA65_RS04500 0.46 +1.1 938,334 + DZA65_RS04500 0.47 +1.2 938,334 + DZA65_RS04500 0.47 -0.4 938,335 - DZA65_RS04500 0.47 -1.6 938,392 - DZA65_RS04500 0.54 +0.1 938,392 - DZA65_RS04500 0.54 +0.7 938,558 - DZA65_RS04500 0.74 +0.6 938,558 - DZA65_RS04500 0.74 +2.1 938,560 + DZA65_RS04500 0.75 -0.9 938,560 + DZA65_RS04500 0.75 +0.8 938,668 + DZA65_RS04500 0.88 -1.1 938,668 + DZA65_RS04500 0.88 -1.3 938,668 + DZA65_RS04500 0.88 +0.7 938,715 - +0.6 938,741 + +0.5 938,741 + +0.1 938,742 - +0.1 938,742 - -0.3 938,742 - -0.8 938,742 - -1.7 938,804 + +0.5 938,804 + -0.6 938,894 + DZA65_RS04505 0.15 +0.8 938,894 + DZA65_RS04505 0.15 +0.0 938,894 + DZA65_RS04505 0.15 -0.5 938,894 + DZA65_RS04505 0.15 +0.3 938,894 + DZA65_RS04505 0.15 -1.4 938,894 + DZA65_RS04505 0.15 -0.7 938,894 + DZA65_RS04505 0.15 +0.7 938,894 + DZA65_RS04505 0.15 +1.1 938,894 + DZA65_RS04505 0.15 +0.1 938,895 - DZA65_RS04505 0.15 -1.1 938,895 - DZA65_RS04505 0.15 -0.2 938,895 - DZA65_RS04505 0.15 +0.1 938,895 - DZA65_RS04505 0.15 -0.5 938,895 - DZA65_RS04505 0.15 +1.7 938,895 - DZA65_RS04505 0.15 +0.1 938,895 - DZA65_RS04505 0.15 +0.8 938,895 - DZA65_RS04505 0.15 -0.0 938,895 - DZA65_RS04505 0.15 -0.2 938,898 + DZA65_RS04505 0.15 +1.6 938,898 + DZA65_RS04505 0.15 -0.5 938,898 + DZA65_RS04505 0.15 +0.1 938,898 + DZA65_RS04505 0.15 -1.2 938,898 + DZA65_RS04505 0.15 -0.7 938,898 + DZA65_RS04505 0.15 -1.3 938,898 + DZA65_RS04505 0.15 -0.4 938,898 + DZA65_RS04505 0.15 -0.9 938,898 + DZA65_RS04505 0.15 -0.2 938,898 + DZA65_RS04505 0.15 +0.6 938,899 - DZA65_RS04505 0.15 +0.6 938,899 - DZA65_RS04505 0.15 +1.1 938,899 - DZA65_RS04505 0.15 -0.2 938,899 - DZA65_RS04505 0.15 -0.2 938,899 - DZA65_RS04505 0.15 -0.3 938,899 - DZA65_RS04505 0.15 +0.3 938,899 - DZA65_RS04505 0.15 +0.5 938,899 - DZA65_RS04505 0.15 -0.7 938,899 - DZA65_RS04505 0.15 -0.4 938,899 - DZA65_RS04505 0.15 -1.1 938,899 - DZA65_RS04505 0.15 +0.7 938,899 - DZA65_RS04505 0.15 -0.3 938,900 + DZA65_RS04505 0.15 +1.3 938,900 + DZA65_RS04505 0.15 -0.6 938,900 + DZA65_RS04505 0.15 -0.3 938,900 + DZA65_RS04505 0.15 -0.9 938,900 + DZA65_RS04505 0.15 -0.9 938,900 + DZA65_RS04505 0.15 -1.3 938,900 + DZA65_RS04505 0.15 -0.5 938,900 + DZA65_RS04505 0.15 -0.4 938,900 + DZA65_RS04505 0.15 +0.1 938,900 + DZA65_RS04505 0.15 -2.1 938,900 + DZA65_RS04505 0.15 -0.7 938,900 + DZA65_RS04505 0.15 -0.9 938,900 + -1.5 938,900 + DZA65_RS04505 0.15 -0.1 938,901 - DZA65_RS04505 0.15 -0.2 938,901 - DZA65_RS04505 0.15 -1.4 938,901 - DZA65_RS04505 0.15 +0.4 938,901 - DZA65_RS04505 0.15 -1.3 938,901 - DZA65_RS04505 0.15 +0.1 938,901 - DZA65_RS04505 0.15 -1.5 938,901 - DZA65_RS04505 0.15 +0.5 938,901 - DZA65_RS04505 0.15 +0.1 938,901 - DZA65_RS04505 0.15 +1.1 938,901 - DZA65_RS04505 0.15 -0.9 938,901 - DZA65_RS04505 0.15 +0.9 938,901 - DZA65_RS04505 0.15 +2.1 938,901 - DZA65_RS04505 0.15 +0.4 938,901 - DZA65_RS04505 0.15 +0.6 938,952 - DZA65_RS04505 0.21 +3.1 938,952 - DZA65_RS04505 0.21 +0.6 938,976 + DZA65_RS04505 0.24 -1.1 939,007 - DZA65_RS04505 0.27 +0.1 939,007 - DZA65_RS04505 0.27 -0.6 939,007 - DZA65_RS04505 0.27 +0.4 939,038 + DZA65_RS04505 0.31 +0.2 939,038 + DZA65_RS04505 0.31 -0.1 939,039 - DZA65_RS04505 0.31 -0.7 939,039 - DZA65_RS04505 0.31 -0.5 939,039 - DZA65_RS04505 0.31 -0.9 939,109 + DZA65_RS04505 0.39 +0.1 939,125 - DZA65_RS04505 0.41 -0.7 939,189 - DZA65_RS04505 0.48 +2.1 939,240 + DZA65_RS04505 0.54 +0.2 939,241 - DZA65_RS04505 0.54 -0.1 939,241 - DZA65_RS04505 0.54 -0.1 939,241 - DZA65_RS04505 0.54 -1.3 939,260 + DZA65_RS04505 0.56 -0.5 939,292 + DZA65_RS04505 0.60 +1.4 939,292 + DZA65_RS04505 0.60 +1.1 939,292 + DZA65_RS04505 0.60 -1.6 939,293 - DZA65_RS04505 0.60 +0.6 939,317 + DZA65_RS04505 0.63 +0.5 939,479 + DZA65_RS04505 0.82 -0.4 939,480 - DZA65_RS04505 0.82 +0.5 939,518 + DZA65_RS04505 0.86 +0.4 939,539 + DZA65_RS04505 0.88 -1.1 939,539 + DZA65_RS04505 0.88 +0.7 939,540 - DZA65_RS04505 0.89 +0.1 939,540 - DZA65_RS04505 0.89 +0.6 939,564 - -0.2 939,577 + +0.4 939,577 + +0.3 939,699 + +1.5 939,699 + +0.0 939,699 + -1.6 939,700 - -1.0 939,700 - +0.3 939,707 + +0.1 939,708 - -2.3 939,708 - -0.2 939,708 - -1.1 939,708 - +0.2
Or see this region's nucleotide sequence