Experiment: 1.88mM_PTB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01985 and DZA65_RS01990 are separated by 162 nucleotides DZA65_RS01990 and DZA65_RS01995 are separated by 210 nucleotides DZA65_RS01995 and DZA65_RS02000 are separated by 119 nucleotides DZA65_RS02000 and DZA65_RS02005 are separated by 123 nucleotides
DZA65_RS01985: DZA65_RS01985 - ornithine carbamoyltransferase, at 436,887 to 437,903
_RS01985
DZA65_RS01990: DZA65_RS01990 - ribonuclease E inhibitor RraB, at 438,066 to 438,494
_RS01990
DZA65_RS01995: DZA65_RS01995 - DUF29 domain-containing protein, at 438,705 to 439,136
_RS01995
DZA65_RS02000: DZA65_RS02000 - hypothetical protein, at 439,256 to 439,990
_RS02000
DZA65_RS02005: DZA65_RS02005 - GNAT family N-acetyltransferase, at 440,114 to 440,617
_RS02005
Position (kb) 438
439
440 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 437.768 kb on + strand, within DZA65_RS01985 at 437.769 kb on - strand, within DZA65_RS01985 at 437.769 kb on - strand, within DZA65_RS01985 at 437.769 kb on - strand, within DZA65_RS01985 at 437.779 kb on + strand, within DZA65_RS01985 at 437.891 kb on - strand at 437.891 kb on - strand at 437.891 kb on - strand at 437.891 kb on - strand at 437.955 kb on + strand at 437.955 kb on + strand at 437.956 kb on - strand at 437.957 kb on + strand at 437.958 kb on - strand at 437.968 kb on - strand at 437.981 kb on + strand at 437.982 kb on - strand at 437.997 kb on + strand at 437.997 kb on + strand at 437.997 kb on + strand at 437.998 kb on - strand at 438.030 kb on + strand at 438.030 kb on + strand at 438.030 kb on + strand at 438.030 kb on + strand at 438.030 kb on + strand at 438.030 kb on + strand at 438.030 kb on + strand at 438.030 kb on + strand at 438.031 kb on - strand at 438.031 kb on - strand at 438.031 kb on - strand at 438.031 kb on - strand at 438.031 kb on - strand at 438.031 kb on - strand at 438.031 kb on - strand at 438.036 kb on + strand at 438.036 kb on + strand at 438.036 kb on + strand at 438.036 kb on + strand at 438.036 kb on + strand at 438.037 kb on - strand at 438.037 kb on - strand at 438.116 kb on + strand, within DZA65_RS01990 at 438.116 kb on + strand, within DZA65_RS01990 at 438.116 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.159 kb on + strand, within DZA65_RS01990 at 438.160 kb on - strand, within DZA65_RS01990 at 438.160 kb on - strand, within DZA65_RS01990 at 438.160 kb on - strand, within DZA65_RS01990 at 438.160 kb on - strand at 438.160 kb on - strand, within DZA65_RS01990 at 438.160 kb on - strand, within DZA65_RS01990 at 438.160 kb on - strand, within DZA65_RS01990 at 438.161 kb on + strand, within DZA65_RS01990 at 438.161 kb on + strand, within DZA65_RS01990 at 438.161 kb on + strand, within DZA65_RS01990 at 438.162 kb on - strand, within DZA65_RS01990 at 438.162 kb on - strand, within DZA65_RS01990 at 438.218 kb on - strand, within DZA65_RS01990 at 438.218 kb on - strand, within DZA65_RS01990 at 438.303 kb on - strand, within DZA65_RS01990 at 438.303 kb on - strand, within DZA65_RS01990 at 438.332 kb on + strand, within DZA65_RS01990 at 438.332 kb on + strand, within DZA65_RS01990 at 438.333 kb on - strand, within DZA65_RS01990 at 438.333 kb on - strand, within DZA65_RS01990 at 438.405 kb on + strand, within DZA65_RS01990 at 438.405 kb on + strand, within DZA65_RS01990 at 438.405 kb on + strand, within DZA65_RS01990 at 438.405 kb on + strand, within DZA65_RS01990 at 438.406 kb on - strand, within DZA65_RS01990 at 438.406 kb on - strand at 438.406 kb on - strand, within DZA65_RS01990 at 438.462 kb on + strand at 438.462 kb on + strand at 438.462 kb on + strand at 438.462 kb on + strand at 438.462 kb on + strand at 438.462 kb on + strand at 438.462 kb on + strand at 438.462 kb on + strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.463 kb on - strand at 438.493 kb on - strand at 438.493 kb on - strand at 438.499 kb on + strand at 438.500 kb on - strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.502 kb on + strand at 438.503 kb on - strand at 438.503 kb on - strand at 438.503 kb on - strand at 438.503 kb on - strand at 438.503 kb on - strand at 438.503 kb on - strand at 438.503 kb on - strand at 438.518 kb on + strand at 438.518 kb on + strand at 438.518 kb on + strand at 438.518 kb on + strand at 438.519 kb on - strand at 438.519 kb on - strand at 438.523 kb on + strand at 438.523 kb on + strand at 438.523 kb on + strand at 438.523 kb on + strand at 438.524 kb on - strand at 438.524 kb on - strand at 438.524 kb on - strand at 438.524 kb on - strand at 438.524 kb on - strand at 438.524 kb on - strand at 438.546 kb on + strand at 438.546 kb on + strand at 438.547 kb on - strand at 438.573 kb on + strand at 438.573 kb on + strand at 438.575 kb on + strand at 438.576 kb on - strand at 438.591 kb on + strand at 438.591 kb on + strand at 438.591 kb on + strand at 438.592 kb on - strand at 438.592 kb on - strand at 438.592 kb on - strand at 438.666 kb on + strand at 438.666 kb on + strand at 438.666 kb on + strand at 438.666 kb on + strand at 438.666 kb on + strand at 438.667 kb on - strand at 438.667 kb on - strand at 438.667 kb on - strand at 438.667 kb on - strand at 438.676 kb on + strand at 438.677 kb on - strand at 438.677 kb on - strand at 438.677 kb on - strand at 438.677 kb on - strand at 438.677 kb on - strand at 438.677 kb on - strand at 438.687 kb on + strand at 438.687 kb on + strand at 438.687 kb on + strand at 438.688 kb on - strand at 438.688 kb on - strand at 438.688 kb on - strand at 438.688 kb on - strand at 438.688 kb on - strand at 438.705 kb on - strand at 438.705 kb on - strand at 438.705 kb on - strand at 438.705 kb on - strand at 438.705 kb on - strand at 438.705 kb on - strand at 438.705 kb on - strand at 438.705 kb on - strand at 438.733 kb on - strand at 438.873 kb on - strand, within DZA65_RS01995 at 438.873 kb on - strand, within DZA65_RS01995 at 438.895 kb on - strand, within DZA65_RS01995 at 438.928 kb on + strand, within DZA65_RS01995 at 438.928 kb on + strand, within DZA65_RS01995 at 438.928 kb on + strand, within DZA65_RS01995 at 438.928 kb on + strand, within DZA65_RS01995 at 438.928 kb on + strand, within DZA65_RS01995 at 438.932 kb on + strand, within DZA65_RS01995 at 438.932 kb on + strand, within DZA65_RS01995 at 438.932 kb on + strand, within DZA65_RS01995 at 438.932 kb on + strand, within DZA65_RS01995 at 438.933 kb on - strand, within DZA65_RS01995 at 438.933 kb on - strand, within DZA65_RS01995 at 438.933 kb on - strand, within DZA65_RS01995 at 438.933 kb on - strand, within DZA65_RS01995 at 438.933 kb on - strand, within DZA65_RS01995 at 438.933 kb on - strand, within DZA65_RS01995 at 438.934 kb on + strand, within DZA65_RS01995 at 438.934 kb on + strand, within DZA65_RS01995 at 438.935 kb on - strand, within DZA65_RS01995 at 438.935 kb on - strand, within DZA65_RS01995 at 438.935 kb on - strand, within DZA65_RS01995 at 438.935 kb on - strand, within DZA65_RS01995 at 439.004 kb on + strand, within DZA65_RS01995 at 439.020 kb on + strand, within DZA65_RS01995 at 439.033 kb on + strand, within DZA65_RS01995 at 439.034 kb on - strand, within DZA65_RS01995 at 439.034 kb on - strand, within DZA65_RS01995 at 439.113 kb on - strand at 439.139 kb on + strand at 439.139 kb on + strand at 439.140 kb on - strand at 439.140 kb on - strand at 439.140 kb on - strand at 439.140 kb on - strand at 439.144 kb on + strand at 439.145 kb on - strand at 439.206 kb on + strand at 439.211 kb on - strand at 439.221 kb on + strand at 439.239 kb on + strand at 439.240 kb on - strand at 439.382 kb on + strand, within DZA65_RS02000 at 439.486 kb on + strand, within DZA65_RS02000 at 439.486 kb on + strand, within DZA65_RS02000 at 439.522 kb on + strand, within DZA65_RS02000 at 439.523 kb on - strand, within DZA65_RS02000 at 439.525 kb on + strand, within DZA65_RS02000 at 439.526 kb on - strand, within DZA65_RS02000 at 439.534 kb on + strand, within DZA65_RS02000 at 439.534 kb on + strand, within DZA65_RS02000 at 439.535 kb on - strand, within DZA65_RS02000 at 439.554 kb on + strand, within DZA65_RS02000 at 439.555 kb on - strand, within DZA65_RS02000 at 439.555 kb on - strand, within DZA65_RS02000 at 439.555 kb on - strand, within DZA65_RS02000 at 439.559 kb on + strand, within DZA65_RS02000 at 439.559 kb on + strand, within DZA65_RS02000 at 439.560 kb on - strand, within DZA65_RS02000 at 439.560 kb on - strand, within DZA65_RS02000 at 439.560 kb on - strand, within DZA65_RS02000 at 439.897 kb on + strand, within DZA65_RS02000 at 439.909 kb on + strand, within DZA65_RS02000 at 439.917 kb on + strand at 439.918 kb on - strand at 439.923 kb on - strand at 439.923 kb on - strand at 439.976 kb on + strand at 439.977 kb on - strand at 439.992 kb on + strand at 439.993 kb on - strand at 439.993 kb on - strand at 439.997 kb on + strand at 439.997 kb on + strand at 439.997 kb on + strand at 439.997 kb on + strand at 439.997 kb on + strand at 439.997 kb on + strand at 439.998 kb on - strand at 439.998 kb on - strand at 439.998 kb on - strand at 440.020 kb on + strand at 440.020 kb on + strand at 440.029 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.115 kb on + strand at 440.116 kb on - strand at 440.117 kb on + strand at 440.117 kb on + strand at 440.117 kb on + strand at 440.117 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1.88mM_PTB remove 437,768 + DZA65_RS01985 0.87 +1.8 437,769 - DZA65_RS01985 0.87 -0.4 437,769 - DZA65_RS01985 0.87 +1.3 437,769 - DZA65_RS01985 0.87 -0.9 437,779 + DZA65_RS01985 0.88 -0.8 437,891 - -3.0 437,891 - -1.3 437,891 - -0.5 437,891 - +1.5 437,955 + -1.7 437,955 + +0.9 437,956 - +1.1 437,957 + +0.3 437,958 - -0.6 437,968 - -0.3 437,981 + -0.3 437,982 - -1.3 437,997 + -0.2 437,997 + +0.5 437,997 + -0.3 437,998 - -0.3 438,030 + -2.7 438,030 + +0.3 438,030 + +0.4 438,030 + -1.0 438,030 + -0.2 438,030 + +0.2 438,030 + -1.0 438,030 + +0.1 438,031 - -0.5 438,031 - -0.6 438,031 - +0.8 438,031 - -0.5 438,031 - -0.3 438,031 - -0.2 438,031 - +0.1 438,036 + +0.4 438,036 + +0.1 438,036 + -0.5 438,036 + +0.6 438,036 + -0.9 438,037 - -1.3 438,037 - -2.3 438,116 + DZA65_RS01990 0.12 -0.4 438,116 + DZA65_RS01990 0.12 -1.2 438,116 + DZA65_RS01990 0.12 +0.4 438,159 + DZA65_RS01990 0.22 +0.1 438,159 + DZA65_RS01990 0.22 -0.7 438,159 + DZA65_RS01990 0.22 -1.5 438,159 + DZA65_RS01990 0.22 -0.5 438,159 + DZA65_RS01990 0.22 +1.1 438,159 + DZA65_RS01990 0.22 +0.4 438,159 + DZA65_RS01990 0.22 -0.9 438,159 + DZA65_RS01990 0.22 -0.5 438,159 + DZA65_RS01990 0.22 -0.7 438,160 - DZA65_RS01990 0.22 -0.9 438,160 - DZA65_RS01990 0.22 +1.1 438,160 - DZA65_RS01990 0.22 -0.3 438,160 - -0.9 438,160 - DZA65_RS01990 0.22 -0.3 438,160 - DZA65_RS01990 0.22 +0.7 438,160 - DZA65_RS01990 0.22 -0.6 438,161 + DZA65_RS01990 0.22 -0.2 438,161 + DZA65_RS01990 0.22 -0.2 438,161 + DZA65_RS01990 0.22 +1.4 438,162 - DZA65_RS01990 0.22 +1.4 438,162 - DZA65_RS01990 0.22 -0.2 438,218 - DZA65_RS01990 0.35 +2.7 438,218 - DZA65_RS01990 0.35 -0.2 438,303 - DZA65_RS01990 0.55 -1.6 438,303 - DZA65_RS01990 0.55 +0.3 438,332 + DZA65_RS01990 0.62 -0.0 438,332 + DZA65_RS01990 0.62 -0.5 438,333 - DZA65_RS01990 0.62 -0.2 438,333 - DZA65_RS01990 0.62 -0.2 438,405 + DZA65_RS01990 0.79 -0.7 438,405 + DZA65_RS01990 0.79 +0.2 438,405 + DZA65_RS01990 0.79 +0.8 438,405 + DZA65_RS01990 0.79 +1.6 438,406 - DZA65_RS01990 0.79 +2.0 438,406 - -0.7 438,406 - DZA65_RS01990 0.79 -0.9 438,462 + +0.5 438,462 + -1.5 438,462 + -0.7 438,462 + -0.2 438,462 + +0.1 438,462 + -0.9 438,462 + -0.1 438,462 + +0.3 438,463 - -0.6 438,463 - +2.1 438,463 - +1.4 438,463 - +2.4 438,463 - -0.9 438,463 - +0.6 438,463 - +0.7 438,463 - -0.3 438,463 - +2.4 438,463 - -1.0 438,493 - -0.7 438,493 - +0.4 438,499 + +0.1 438,500 - +1.7 438,502 + -0.2 438,502 + -1.2 438,502 + -0.7 438,502 + +1.4 438,502 + -0.1 438,502 + -0.5 438,502 + -0.5 438,502 + +0.2 438,502 + +0.1 438,502 + -0.0 438,503 - +1.1 438,503 - -1.8 438,503 - +1.1 438,503 - +1.2 438,503 - +1.1 438,503 - +1.1 438,503 - +0.4 438,518 + +0.4 438,518 + -0.0 438,518 + -0.4 438,518 + +0.8 438,519 - -1.2 438,519 - +1.7 438,523 + -1.7 438,523 + +1.4 438,523 + -0.9 438,523 + -0.1 438,524 - -1.2 438,524 - -1.7 438,524 - +1.4 438,524 - -0.7 438,524 - +0.1 438,524 - -0.2 438,546 + -0.4 438,546 + +1.1 438,547 - -2.0 438,573 + +1.1 438,573 + -1.5 438,575 + -0.9 438,576 - +0.4 438,591 + -0.3 438,591 + +1.1 438,591 + +1.1 438,592 - -0.1 438,592 - -0.3 438,592 - -0.9 438,666 + +0.7 438,666 + -0.9 438,666 + -0.6 438,666 + -1.4 438,666 + -0.9 438,667 - -1.9 438,667 - -1.6 438,667 - -0.1 438,667 - -1.2 438,676 + -0.1 438,677 - +1.0 438,677 - -1.1 438,677 - -0.7 438,677 - +0.2 438,677 - -1.2 438,677 - -2.2 438,687 + +2.1 438,687 + -0.5 438,687 + +0.9 438,688 - +1.1 438,688 - -1.7 438,688 - -1.6 438,688 - -1.7 438,688 - -0.7 438,705 - -0.5 438,705 - -0.2 438,705 - +0.1 438,705 - -1.2 438,705 - +0.7 438,705 - +0.6 438,705 - +1.1 438,705 - -0.5 438,733 - -0.3 438,873 - DZA65_RS01995 0.39 +0.2 438,873 - DZA65_RS01995 0.39 -1.2 438,895 - DZA65_RS01995 0.44 +0.7 438,928 + DZA65_RS01995 0.52 -0.4 438,928 + DZA65_RS01995 0.52 +0.3 438,928 + DZA65_RS01995 0.52 +0.9 438,928 + DZA65_RS01995 0.52 +0.1 438,928 + DZA65_RS01995 0.52 +1.1 438,932 + DZA65_RS01995 0.53 +0.4 438,932 + DZA65_RS01995 0.53 +0.6 438,932 + DZA65_RS01995 0.53 +0.9 438,932 + DZA65_RS01995 0.53 +1.5 438,933 - DZA65_RS01995 0.53 -0.5 438,933 - DZA65_RS01995 0.53 -0.6 438,933 - DZA65_RS01995 0.53 -0.3 438,933 - DZA65_RS01995 0.53 +0.6 438,933 - DZA65_RS01995 0.53 -0.2 438,933 - DZA65_RS01995 0.53 +0.3 438,934 + DZA65_RS01995 0.53 -0.7 438,934 + DZA65_RS01995 0.53 +0.1 438,935 - DZA65_RS01995 0.53 +0.0 438,935 - DZA65_RS01995 0.53 +0.3 438,935 - DZA65_RS01995 0.53 -0.2 438,935 - DZA65_RS01995 0.53 +0.3 439,004 + DZA65_RS01995 0.69 +0.4 439,020 + DZA65_RS01995 0.73 -0.1 439,033 + DZA65_RS01995 0.76 +0.5 439,034 - DZA65_RS01995 0.76 +0.4 439,034 - DZA65_RS01995 0.76 -1.2 439,113 - +1.9 439,139 + -0.3 439,139 + -0.7 439,140 - +0.7 439,140 - -0.0 439,140 - -0.9 439,140 - -0.7 439,144 + -0.9 439,145 - -1.5 439,206 + -1.3 439,211 - -1.5 439,221 + -0.5 439,239 + -0.9 439,240 - -0.7 439,382 + DZA65_RS02000 0.17 +0.4 439,486 + DZA65_RS02000 0.31 -1.3 439,486 + DZA65_RS02000 0.31 +0.3 439,522 + DZA65_RS02000 0.36 -0.1 439,523 - DZA65_RS02000 0.36 -0.4 439,525 + DZA65_RS02000 0.37 -0.0 439,526 - DZA65_RS02000 0.37 +0.1 439,534 + DZA65_RS02000 0.38 -1.1 439,534 + DZA65_RS02000 0.38 +0.7 439,535 - DZA65_RS02000 0.38 -0.8 439,554 + DZA65_RS02000 0.41 +0.1 439,555 - DZA65_RS02000 0.41 +0.7 439,555 - DZA65_RS02000 0.41 +0.0 439,555 - DZA65_RS02000 0.41 -0.4 439,559 + DZA65_RS02000 0.41 -0.6 439,559 + DZA65_RS02000 0.41 -0.5 439,560 - DZA65_RS02000 0.41 +0.5 439,560 - DZA65_RS02000 0.41 -0.1 439,560 - DZA65_RS02000 0.41 +1.1 439,897 + DZA65_RS02000 0.87 +0.3 439,909 + DZA65_RS02000 0.89 +1.5 439,917 + +0.1 439,918 - -0.2 439,923 - -0.8 439,923 - -0.2 439,976 + +0.1 439,977 - +0.5 439,992 + -3.0 439,993 - -1.2 439,993 - +1.4 439,997 + -0.0 439,997 + -0.5 439,997 + +1.5 439,997 + +1.1 439,997 + -0.8 439,997 + +0.4 439,998 - -1.8 439,998 - +0.5 439,998 - -2.0 440,020 + +0.4 440,020 + +0.4 440,029 + -2.5 440,115 + +0.2 440,115 + -0.7 440,115 + -1.8 440,115 + -0.8 440,115 + -0.2 440,115 + -0.4 440,115 + +0.1 440,115 + +0.5 440,115 + +0.7 440,116 - -1.7 440,117 + -0.5 440,117 + +0.5 440,117 + +0.0 440,117 + +0.3
Or see this region's nucleotide sequence