Experiment: 1.88mM_PTB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03055 and DZA65_RS03060 are separated by 12 nucleotides DZA65_RS03060 and DZA65_RS03065 are separated by 478 nucleotides
DZA65_RS03055: DZA65_RS03055 - FAD:protein FMN transferase, at 653,990 to 654,961
_RS03055
DZA65_RS03060: DZA65_RS03060 - TetR/AcrR family transcriptional regulator, at 654,974 to 655,555
_RS03060
DZA65_RS03065: DZA65_RS03065 - SDR family oxidoreductase, at 656,034 to 656,897
_RS03065
Position (kb) 654
655
656 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 654.017 kb on + strand at 654.018 kb on - strand at 654.028 kb on - strand at 654.217 kb on + strand, within DZA65_RS03055 at 654.346 kb on - strand, within DZA65_RS03055 at 654.346 kb on - strand, within DZA65_RS03055 at 654.346 kb on - strand, within DZA65_RS03055 at 654.380 kb on - strand, within DZA65_RS03055 at 654.380 kb on - strand, within DZA65_RS03055 at 654.380 kb on - strand, within DZA65_RS03055 at 654.380 kb on - strand, within DZA65_RS03055 at 654.452 kb on + strand, within DZA65_RS03055 at 654.452 kb on + strand, within DZA65_RS03055 at 654.452 kb on + strand, within DZA65_RS03055 at 654.452 kb on + strand, within DZA65_RS03055 at 654.452 kb on + strand, within DZA65_RS03055 at 654.452 kb on + strand, within DZA65_RS03055 at 654.452 kb on + strand, within DZA65_RS03055 at 654.453 kb on - strand, within DZA65_RS03055 at 654.453 kb on - strand, within DZA65_RS03055 at 654.454 kb on + strand, within DZA65_RS03055 at 654.482 kb on + strand, within DZA65_RS03055 at 654.483 kb on - strand, within DZA65_RS03055 at 654.497 kb on + strand, within DZA65_RS03055 at 654.497 kb on + strand, within DZA65_RS03055 at 654.497 kb on + strand, within DZA65_RS03055 at 654.497 kb on + strand, within DZA65_RS03055 at 654.498 kb on - strand, within DZA65_RS03055 at 654.498 kb on - strand, within DZA65_RS03055 at 654.662 kb on + strand, within DZA65_RS03055 at 654.662 kb on + strand, within DZA65_RS03055 at 654.662 kb on + strand, within DZA65_RS03055 at 654.671 kb on + strand, within DZA65_RS03055 at 654.672 kb on - strand, within DZA65_RS03055 at 654.703 kb on + strand, within DZA65_RS03055 at 654.703 kb on + strand, within DZA65_RS03055 at 654.703 kb on + strand, within DZA65_RS03055 at 654.704 kb on - strand, within DZA65_RS03055 at 654.704 kb on - strand, within DZA65_RS03055 at 654.704 kb on - strand, within DZA65_RS03055 at 654.704 kb on - strand, within DZA65_RS03055 at 654.704 kb on - strand, within DZA65_RS03055 at 654.704 kb on - strand, within DZA65_RS03055 at 654.704 kb on - strand, within DZA65_RS03055 at 654.791 kb on + strand at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.806 kb on + strand, within DZA65_RS03055 at 654.836 kb on + strand, within DZA65_RS03055 at 654.836 kb on + strand, within DZA65_RS03055 at 654.836 kb on + strand, within DZA65_RS03055 at 654.836 kb on + strand, within DZA65_RS03055 at 654.836 kb on + strand, within DZA65_RS03055 at 654.836 kb on + strand, within DZA65_RS03055 at 654.837 kb on - strand, within DZA65_RS03055 at 654.837 kb on - strand, within DZA65_RS03055 at 654.837 kb on - strand, within DZA65_RS03055 at 654.837 kb on - strand, within DZA65_RS03055 at 654.914 kb on + strand at 654.914 kb on + strand at 654.915 kb on - strand at 654.915 kb on - strand at 654.915 kb on - strand at 654.922 kb on + strand at 654.922 kb on + strand at 654.922 kb on + strand at 654.922 kb on + strand at 654.975 kb on + strand at 654.975 kb on + strand at 654.975 kb on + strand at 654.975 kb on + strand at 654.975 kb on + strand at 654.975 kb on + strand at 654.976 kb on - strand at 654.976 kb on - strand at 654.976 kb on - strand at 655.160 kb on + strand, within DZA65_RS03060 at 655.160 kb on + strand, within DZA65_RS03060 at 655.161 kb on - strand, within DZA65_RS03060 at 655.161 kb on - strand, within DZA65_RS03060 at 655.161 kb on - strand, within DZA65_RS03060 at 655.161 kb on - strand, within DZA65_RS03060 at 655.173 kb on + strand, within DZA65_RS03060 at 655.173 kb on + strand, within DZA65_RS03060 at 655.174 kb on - strand, within DZA65_RS03060 at 655.174 kb on - strand, within DZA65_RS03060 at 655.184 kb on + strand, within DZA65_RS03060 at 655.185 kb on - strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.212 kb on - strand, within DZA65_RS03060 at 655.212 kb on - strand, within DZA65_RS03060 at 655.212 kb on - strand, within DZA65_RS03060 at 655.278 kb on + strand, within DZA65_RS03060 at 655.278 kb on + strand, within DZA65_RS03060 at 655.279 kb on - strand, within DZA65_RS03060 at 655.279 kb on - strand, within DZA65_RS03060 at 655.279 kb on - strand, within DZA65_RS03060 at 655.309 kb on + strand, within DZA65_RS03060 at 655.310 kb on - strand, within DZA65_RS03060 at 655.410 kb on + strand, within DZA65_RS03060 at 655.410 kb on + strand, within DZA65_RS03060 at 655.410 kb on + strand, within DZA65_RS03060 at 655.507 kb on + strand at 655.507 kb on + strand at 655.507 kb on + strand at 655.545 kb on - strand at 655.545 kb on - strand at 655.545 kb on - strand at 655.571 kb on - strand at 655.606 kb on + strand at 655.619 kb on + strand at 655.620 kb on - strand at 655.651 kb on + strand at 655.684 kb on - strand at 655.741 kb on + strand at 655.742 kb on - strand at 655.742 kb on - strand at 655.742 kb on - strand at 655.742 kb on - strand at 655.742 kb on - strand at 655.742 kb on - strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.889 kb on + strand at 655.893 kb on + strand at 655.894 kb on - strand at 655.894 kb on - strand at 655.964 kb on + strand at 655.965 kb on - strand at 655.992 kb on + strand at 655.992 kb on + strand at 655.992 kb on + strand at 655.993 kb on - strand at 655.993 kb on - strand at 655.993 kb on - strand at 655.993 kb on - strand at 656.020 kb on + strand at 656.020 kb on + strand at 656.020 kb on + strand at 656.021 kb on - strand at 656.021 kb on - strand at 656.039 kb on + strand at 656.092 kb on - strand at 656.092 kb on - strand at 656.092 kb on - strand at 656.148 kb on - strand, within DZA65_RS03065 at 656.148 kb on - strand, within DZA65_RS03065 at 656.187 kb on + strand, within DZA65_RS03065 at 656.187 kb on + strand, within DZA65_RS03065 at 656.222 kb on + strand, within DZA65_RS03065 at 656.223 kb on - strand, within DZA65_RS03065 at 656.223 kb on - strand, within DZA65_RS03065 at 656.309 kb on + strand, within DZA65_RS03065 at 656.383 kb on + strand, within DZA65_RS03065 at 656.383 kb on + strand, within DZA65_RS03065 at 656.383 kb on + strand, within DZA65_RS03065 at 656.384 kb on - strand, within DZA65_RS03065 at 656.384 kb on - strand, within DZA65_RS03065 at 656.384 kb on - strand, within DZA65_RS03065 at 656.444 kb on + strand, within DZA65_RS03065
Per-strain Table
Position Strand Gene LocusTag Fraction 1.88mM_PTB remove 654,017 + +0.1 654,018 - -0.1 654,028 - +0.9 654,217 + DZA65_RS03055 0.23 +0.3 654,346 - DZA65_RS03055 0.37 -0.2 654,346 - DZA65_RS03055 0.37 +0.4 654,346 - DZA65_RS03055 0.37 -0.3 654,380 - DZA65_RS03055 0.40 +0.7 654,380 - DZA65_RS03055 0.40 +0.4 654,380 - DZA65_RS03055 0.40 -0.5 654,380 - DZA65_RS03055 0.40 +0.6 654,452 + DZA65_RS03055 0.48 +0.6 654,452 + DZA65_RS03055 0.48 +0.8 654,452 + DZA65_RS03055 0.48 -1.0 654,452 + DZA65_RS03055 0.48 -0.6 654,452 + DZA65_RS03055 0.48 -0.6 654,452 + DZA65_RS03055 0.48 -0.9 654,452 + DZA65_RS03055 0.48 -0.5 654,453 - DZA65_RS03055 0.48 -0.2 654,453 - DZA65_RS03055 0.48 +1.7 654,454 + DZA65_RS03055 0.48 -0.7 654,482 + DZA65_RS03055 0.51 -0.5 654,483 - DZA65_RS03055 0.51 +0.5 654,497 + DZA65_RS03055 0.52 +0.7 654,497 + DZA65_RS03055 0.52 -0.0 654,497 + DZA65_RS03055 0.52 -0.2 654,497 + DZA65_RS03055 0.52 -0.2 654,498 - DZA65_RS03055 0.52 +0.0 654,498 - DZA65_RS03055 0.52 +1.3 654,662 + DZA65_RS03055 0.69 +0.1 654,662 + DZA65_RS03055 0.69 +1.1 654,662 + DZA65_RS03055 0.69 -0.1 654,671 + DZA65_RS03055 0.70 -2.7 654,672 - DZA65_RS03055 0.70 -1.4 654,703 + DZA65_RS03055 0.73 +0.5 654,703 + DZA65_RS03055 0.73 +0.3 654,703 + DZA65_RS03055 0.73 +0.8 654,704 - DZA65_RS03055 0.73 -0.9 654,704 - DZA65_RS03055 0.73 +0.1 654,704 - DZA65_RS03055 0.73 -0.6 654,704 - DZA65_RS03055 0.73 +1.1 654,704 - DZA65_RS03055 0.73 +1.1 654,704 - DZA65_RS03055 0.73 -0.3 654,704 - DZA65_RS03055 0.73 -0.5 654,791 + -0.8 654,791 + DZA65_RS03055 0.82 +0.1 654,791 + DZA65_RS03055 0.82 +2.1 654,791 + DZA65_RS03055 0.82 -0.6 654,791 + DZA65_RS03055 0.82 +0.4 654,791 + DZA65_RS03055 0.82 +0.1 654,791 + DZA65_RS03055 0.82 +0.3 654,791 + DZA65_RS03055 0.82 -0.6 654,791 + DZA65_RS03055 0.82 -0.4 654,791 + DZA65_RS03055 0.82 +0.1 654,791 + DZA65_RS03055 0.82 +0.5 654,792 - DZA65_RS03055 0.83 +0.1 654,792 - DZA65_RS03055 0.83 -0.2 654,792 - DZA65_RS03055 0.83 +0.5 654,792 - DZA65_RS03055 0.83 +0.9 654,792 - DZA65_RS03055 0.83 -0.9 654,792 - DZA65_RS03055 0.83 -0.1 654,792 - DZA65_RS03055 0.83 +0.7 654,792 - DZA65_RS03055 0.83 +0.5 654,792 - DZA65_RS03055 0.83 +1.1 654,792 - DZA65_RS03055 0.83 +0.5 654,806 + DZA65_RS03055 0.84 -0.0 654,836 + DZA65_RS03055 0.87 +2.1 654,836 + DZA65_RS03055 0.87 -0.1 654,836 + DZA65_RS03055 0.87 +1.3 654,836 + DZA65_RS03055 0.87 +0.1 654,836 + DZA65_RS03055 0.87 -2.0 654,836 + DZA65_RS03055 0.87 +0.9 654,837 - DZA65_RS03055 0.87 -1.8 654,837 - DZA65_RS03055 0.87 +1.1 654,837 - DZA65_RS03055 0.87 -0.1 654,837 - DZA65_RS03055 0.87 +2.1 654,914 + +0.0 654,914 + +1.1 654,915 - -0.5 654,915 - +1.7 654,915 - -0.5 654,922 + +0.3 654,922 + +1.5 654,922 + +0.1 654,922 + -0.8 654,975 + +0.1 654,975 + +0.1 654,975 + +0.1 654,975 + +0.2 654,975 + -1.2 654,975 + -1.0 654,976 - +0.2 654,976 - -2.3 654,976 - -0.3 655,160 + DZA65_RS03060 0.32 -2.3 655,160 + DZA65_RS03060 0.32 +0.5 655,161 - DZA65_RS03060 0.32 -0.5 655,161 - DZA65_RS03060 0.32 -0.6 655,161 - DZA65_RS03060 0.32 +0.1 655,161 - DZA65_RS03060 0.32 +0.3 655,173 + DZA65_RS03060 0.34 +0.4 655,173 + DZA65_RS03060 0.34 +0.1 655,174 - DZA65_RS03060 0.34 +0.1 655,174 - DZA65_RS03060 0.34 +0.7 655,184 + DZA65_RS03060 0.36 -0.3 655,185 - DZA65_RS03060 0.36 -0.5 655,211 + DZA65_RS03060 0.41 +1.5 655,211 + DZA65_RS03060 0.41 -0.5 655,211 + DZA65_RS03060 0.41 +0.8 655,211 + DZA65_RS03060 0.41 +0.7 655,211 + DZA65_RS03060 0.41 -1.5 655,211 + DZA65_RS03060 0.41 -1.5 655,212 - DZA65_RS03060 0.41 -1.8 655,212 - DZA65_RS03060 0.41 -1.7 655,212 - DZA65_RS03060 0.41 -0.5 655,278 + DZA65_RS03060 0.52 -0.5 655,278 + DZA65_RS03060 0.52 -0.9 655,279 - DZA65_RS03060 0.52 -0.1 655,279 - DZA65_RS03060 0.52 -1.7 655,279 - DZA65_RS03060 0.52 -0.9 655,309 + DZA65_RS03060 0.58 -1.2 655,310 - DZA65_RS03060 0.58 +0.5 655,410 + DZA65_RS03060 0.75 +0.1 655,410 + DZA65_RS03060 0.75 -1.6 655,410 + DZA65_RS03060 0.75 +0.5 655,507 + +0.1 655,507 + +0.4 655,507 + +1.7 655,545 - +0.6 655,545 - -0.3 655,545 - -0.3 655,571 - -0.2 655,606 + +1.1 655,619 + +0.1 655,620 - +1.9 655,651 + -0.1 655,684 - +1.7 655,741 + +0.5 655,742 - -0.7 655,742 - +0.4 655,742 - -0.9 655,742 - +0.7 655,742 - +0.5 655,742 - +1.1 655,743 + -0.3 655,743 + +0.4 655,743 + -0.7 655,743 + +0.1 655,743 + +0.8 655,743 + -0.9 655,743 + +0.1 655,743 + -0.2 655,743 + -0.7 655,743 + -1.2 655,743 + -0.9 655,743 + +0.4 655,743 + +0.5 655,744 - +0.2 655,744 - +0.5 655,744 - +0.5 655,744 - +0.3 655,744 - -1.3 655,744 - +3.1 655,744 - -0.6 655,744 - -0.5 655,744 - -1.2 655,744 - +1.7 655,744 - -0.5 655,744 - +0.4 655,744 - +0.9 655,744 - +0.2 655,744 - -0.9 655,889 + +0.8 655,893 + -0.8 655,894 - -0.0 655,894 - -0.3 655,964 + -0.4 655,965 - +2.1 655,992 + +0.9 655,992 + +0.8 655,992 + +2.1 655,993 - +1.1 655,993 - +1.4 655,993 - -0.6 655,993 - -2.6 656,020 + -0.5 656,020 + -0.0 656,020 + +1.4 656,021 - +1.4 656,021 - -0.2 656,039 + -0.6 656,092 - +0.5 656,092 - +0.2 656,092 - +0.8 656,148 - DZA65_RS03065 0.13 -0.5 656,148 - DZA65_RS03065 0.13 +0.8 656,187 + DZA65_RS03065 0.18 -0.6 656,187 + DZA65_RS03065 0.18 -0.4 656,222 + DZA65_RS03065 0.22 +0.0 656,223 - DZA65_RS03065 0.22 +0.5 656,223 - DZA65_RS03065 0.22 -0.4 656,309 + DZA65_RS03065 0.32 +0.5 656,383 + DZA65_RS03065 0.40 -1.0 656,383 + DZA65_RS03065 0.40 +0.1 656,383 + DZA65_RS03065 0.40 -0.8 656,384 - DZA65_RS03065 0.41 +2.4 656,384 - DZA65_RS03065 0.41 -1.1 656,384 - DZA65_RS03065 0.41 +0.5 656,444 + DZA65_RS03065 0.47 +0.0
Or see this region's nucleotide sequence