Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07410

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,540,520	+		DZA65_RS07400	0.73	+0.0
1,540,521	-		DZA65_RS07400	0.73	-1.7
1,540,530	-		DZA65_RS07400	0.74	+0.0
1,540,530	-		DZA65_RS07400	0.74	-0.7
1,540,598	+		DZA65_RS07400	0.81	-1.8
1,540,599	-		DZA65_RS07400	0.81	-0.5
1,540,599	-		DZA65_RS07400	0.81	-0.9
1,540,599	-		DZA65_RS07400	0.81	-0.1
1,540,599	-		DZA65_RS07400	0.81	-0.5
1,540,641	+				-2.2
1,540,641	+		DZA65_RS07400	0.86	+0.9
1,540,792	+				-0.4
1,540,792	+				-1.2
1,540,793	-				+0.3
1,540,793	-				-0.1
1,540,793	-				-1.3
1,540,793	-				-0.4
1,540,793	-				-1.4
1,540,793	-				+1.3
1,540,807	+				-2.2
1,540,807	+				-1.2
1,540,808	-				-0.8
1,540,809	+				-2.4
1,540,856	-				+0.7
1,540,856	-				-0.3
1,540,856	-				-0.1
1,540,895	+				-1.2
1,540,896	-				+0.5
1,540,911	+				-0.7
1,540,912	-				+0.9
1,540,912	-				+0.3
1,540,912	-				+0.3
1,540,926	-				-0.1
1,540,926	-				-0.2
1,540,926	-				+0.9
1,540,926	-				-0.8
1,540,926	-				+0.6
1,540,926	-				+0.3
1,540,930	-				-1.1
1,540,930	-				-1.1
1,540,930	-				-0.8
1,540,930	-				+0.2
1,540,930	-				-0.3
1,540,930	-				-0.3
1,540,930	-				+0.1
1,540,930	-				+0.3
1,540,930	-				+0.1
1,540,945	+				-0.3
1,540,945	+				+0.6
1,540,946	-				-0.1
1,540,962	+		DZA65_RS07405	0.11	-2.2
1,540,963	-		DZA65_RS07405	0.11	+0.1
1,541,007	+		DZA65_RS07405	0.21	+0.1
1,541,007	+		DZA65_RS07405	0.21	+0.5
1,541,058	+		DZA65_RS07405	0.32	+0.9
1,541,058	+		DZA65_RS07405	0.32	-0.5
1,541,058	+		DZA65_RS07405	0.32	+0.3
1,541,058	+		DZA65_RS07405	0.32	-0.1
1,541,058	+		DZA65_RS07405	0.32	-0.2
1,541,059	-		DZA65_RS07405	0.32	-0.7
1,541,059	-		DZA65_RS07405	0.32	+0.6
1,541,064	+				+0.6
1,541,064	+		DZA65_RS07405	0.33	+0.3
1,541,064	+		DZA65_RS07405	0.33	+0.1
1,541,065	-		DZA65_RS07405	0.33	-0.7
1,541,068	+		DZA65_RS07405	0.34	-0.9
1,541,068	+		DZA65_RS07405	0.34	-1.2
1,541,068	+		DZA65_RS07405	0.34	+0.0
1,541,104	+		DZA65_RS07405	0.42	-0.7
1,541,104	+		DZA65_RS07405	0.42	+0.2
1,541,161	+		DZA65_RS07405	0.54	-1.0
1,541,161	+		DZA65_RS07405	0.54	-1.3
1,541,161	+		DZA65_RS07405	0.54	-0.2
1,541,162	-		DZA65_RS07405	0.54	-3.0
1,541,162	-		DZA65_RS07405	0.54	-1.7
1,541,162	-		DZA65_RS07405	0.54	-1.1
1,541,162	-		DZA65_RS07405	0.54	-1.4
1,541,215	+		DZA65_RS07405	0.66	+0.9
1,541,215	+		DZA65_RS07405	0.66	-2.2
1,541,241	+		DZA65_RS07405	0.72	-0.4
1,541,241	+		DZA65_RS07405	0.72	-1.2
1,541,241	+		DZA65_RS07405	0.72	+0.3
1,541,241	+		DZA65_RS07405	0.72	-0.1
1,541,242	-		DZA65_RS07405	0.72	-0.7
1,541,242	-		DZA65_RS07405	0.72	-0.7
1,541,242	-		DZA65_RS07405	0.72	-0.1
1,541,247	+		DZA65_RS07405	0.73	+0.5
1,541,254	+		DZA65_RS07405	0.75	+0.6
1,541,254	+		DZA65_RS07405	0.75	+0.9
1,541,255	-		DZA65_RS07405	0.75	-1.0
1,541,323	-		DZA65_RS07405	0.90	+0.3
1,541,398	-				-1.4
1,541,406	-				-0.8
1,541,432	+				-1.4
1,541,432	+				+1.9
1,541,433	-				-1.0
1,541,438	+				-0.7
1,541,438	+				-0.7
1,541,438	+				+1.3
1,541,441	+				+2.7
1,541,441	+				-0.1
1,541,442	-				-0.7
1,541,442	-				+0.8
1,541,442	-				+0.9
1,541,442	-				+0.3
1,541,442	-				+0.7
1,541,446	+				-1.4
1,541,446	+				+1.9
1,541,446	+				-0.8
1,541,446	+				+0.9
1,541,447	-				-1.0
1,541,464	+				+0.3
1,541,477	+				+0.9
1,541,477	+				-0.1
1,541,478	-				+0.5
1,541,478	-				-0.9
1,541,478	-				-0.1
1,541,481	+				-0.0
1,541,481	+				-0.3
1,541,483	+				-0.1
1,541,483	+				-2.1
1,541,484	-				-1.3
1,541,492	+				+0.1
1,541,493	-				-0.1
1,541,493	-				-0.1
1,541,494	+				+0.2
1,541,494	+				-0.0
1,541,494	+				-1.6
1,541,494	+				+0.7
1,541,495	-				-2.1
1,541,495	-				+0.4
1,541,506	+				+0.9
1,541,518	+				+1.1
1,541,518	+				-1.1
1,541,518	+				-1.1
1,541,518	+				-0.4
1,541,518	+				+0.9
1,541,519	-				-0.2
1,541,519	-				-1.1
1,541,519	-				-2.2
1,541,519	-				+1.9
1,541,531	+				-1.9
1,541,531	+				-1.4
1,541,532	-				+0.2
1,541,532	-				+0.3
1,541,547	-		DZA65_RS07410	0.11	-0.3
1,541,547	-		DZA65_RS07410	0.11	-0.7
1,541,548	+		DZA65_RS07410	0.11	-2.1
1,541,549	-		DZA65_RS07410	0.12	-0.7
1,541,565	-		DZA65_RS07410	0.16	-1.7
1,541,565	-		DZA65_RS07410	0.16	-0.4
1,541,565	-		DZA65_RS07410	0.16	-0.4
1,541,576	-		DZA65_RS07410	0.19	-0.1
1,541,588	+		DZA65_RS07410	0.23	+0.5
1,541,588	+		DZA65_RS07410	0.23	+0.0
1,541,589	-		DZA65_RS07410	0.23	-0.4
1,541,589	-		DZA65_RS07410	0.23	-1.0
1,541,608	+		DZA65_RS07410	0.28	+1.9
1,541,608	+		DZA65_RS07410	0.28	+0.5
1,541,608	+		DZA65_RS07410	0.28	-0.6
1,541,608	+		DZA65_RS07410	0.28	-0.5
1,541,609	-		DZA65_RS07410	0.29	-0.2
1,541,609	-		DZA65_RS07410	0.29	+0.1
1,541,617	+		DZA65_RS07410	0.31	-0.9
1,541,617	+		DZA65_RS07410	0.31	-0.1
1,541,617	+		DZA65_RS07410	0.31	+0.3
1,541,618	-		DZA65_RS07410	0.31	-0.1
1,541,629	+		DZA65_RS07410	0.34	+0.6
1,541,653	-		DZA65_RS07410	0.41	+0.7
1,541,653	-		DZA65_RS07410	0.41	+0.9
1,541,653	-		DZA65_RS07410	0.41	-1.1
1,541,668	+		DZA65_RS07410	0.45	-0.7
1,541,688	+		DZA65_RS07410	0.51	-1.3
1,541,688	+		DZA65_RS07410	0.51	-0.5
1,541,688	+		DZA65_RS07410	0.51	-1.4
1,541,688	+		DZA65_RS07410	0.51	+0.0
1,541,688	+		DZA65_RS07410	0.51	+1.1
1,541,689	-		DZA65_RS07410	0.51	+0.0
1,541,689	-		DZA65_RS07410	0.51	+0.1
1,541,689	-		DZA65_RS07410	0.51	-0.1
1,541,689	-		DZA65_RS07410	0.51	+0.1
1,541,689	-		DZA65_RS07410	0.51	-1.2
1,541,689	-		DZA65_RS07410	0.51	-0.0
1,541,689	-		DZA65_RS07410	0.51	+0.9
1,541,749	-		DZA65_RS07410	0.68	-1.0
1,541,756	+		DZA65_RS07410	0.70	+0.3
1,541,757	-		DZA65_RS07410	0.70	-0.1
1,541,757	-		DZA65_RS07410	0.70	-2.1
1,541,757	-		DZA65_RS07410	0.70	+0.0
1,541,761	+		DZA65_RS07410	0.71	-1.6
1,541,762	-		DZA65_RS07410	0.71	+2.7
1,541,762	-		DZA65_RS07410	0.71	+0.4
1,541,762	-		DZA65_RS07410	0.71	-2.1
1,541,767	+		DZA65_RS07410	0.73	+0.3
1,541,768	-		DZA65_RS07410	0.73	-0.8
1,541,768	-		DZA65_RS07410	0.73	-0.1
1,541,768	-		DZA65_RS07410	0.73	+0.5
1,541,768	-		DZA65_RS07410	0.73	+1.9
1,541,820	+		DZA65_RS07410	0.88	+0.3
1,541,820	+		DZA65_RS07410	0.88	-1.0
1,541,861	+				-1.1
1,541,861	+				+0.9
1,541,862	-				-0.8
1,541,865	+				+0.3
1,541,865	+				-0.7
1,541,865	+				-0.7
1,541,866	-				-1.1
1,541,866	-				-0.2
1,541,866	-				-0.1
1,541,866	-				-1.7
1,541,866	-				-0.5
1,541,866	-				+1.2
1,541,871	+				+0.9
1,541,871	+				-0.3
1,541,872	-				-0.4
1,541,875	-				-1.9
1,541,875	-				-1.2
1,541,875	-				-0.1
1,541,890	+				+0.3
1,541,891	-				+0.1
1,541,897	+				-0.1
1,541,898	-				+0.2
1,541,898	-				-1.2
1,541,898	-				-1.4
1,541,898	-				+0.7
1,541,959	+				-1.2
1,542,005	+				-0.1
1,542,006	-				-0.8
1,542,011	+				+0.2
1,542,012	-				-1.4
1,542,056	+				-1.4
1,542,215	+		DZA65_RS07415	0.41	+0.5
1,542,215	+		DZA65_RS07415	0.41	+0.2
1,542,215	+		DZA65_RS07415	0.41	+0.3
1,542,215	+		DZA65_RS07415	0.41	-0.5
1,542,216	-		DZA65_RS07415	0.41	+0.2
1,542,216	-		DZA65_RS07415	0.41	-1.2
1,542,216	-		DZA65_RS07415	0.41	-0.2
1,542,216	-		DZA65_RS07415	0.41	-0.9
1,542,216	-		DZA65_RS07415	0.41	+0.9
1,542,216	-		DZA65_RS07415	0.41	+0.9
1,542,216	-		DZA65_RS07415	0.41	-0.7
1,542,226	-		DZA65_RS07415	0.43	+0.7
1,542,239	+		DZA65_RS07415	0.46	-0.1
1,542,239	+		DZA65_RS07415	0.46	+0.3
1,542,245	+		DZA65_RS07415	0.48	-0.4
1,542,287	+		DZA65_RS07415	0.58	+0.7
1,542,317	+		DZA65_RS07415	0.65	+0.9
1,542,367	+		DZA65_RS07415	0.76	-1.1
1,542,374	+		DZA65_RS07415	0.78	+0.8
1,542,374	+		DZA65_RS07415	0.78	-0.7
1,542,375	-		DZA65_RS07415	0.78	+0.3
1,542,416	+		DZA65_RS07415	0.88	-0.3
1,542,416	+		DZA65_RS07415	0.88	-0.1
1,542,417	-		DZA65_RS07415	0.88	+0.1
1,542,417	-		DZA65_RS07415	0.88	+0.3
1,542,417	-		DZA65_RS07415	0.88	+0.2
1,542,417	-		DZA65_RS07415	0.88	+1.9
1,542,419	+		DZA65_RS07415	0.88	+0.1
1,542,419	+		DZA65_RS07415	0.88	+0.3
1,542,419	+		DZA65_RS07415	0.88	-0.8
1,542,420	-		DZA65_RS07415	0.89	-0.7
1,542,420	-		DZA65_RS07415	0.89	-0.1
1,542,420	-		DZA65_RS07415	0.89	-0.1
1,542,420	-		DZA65_RS07415	0.89	-0.7
1,542,420	-		DZA65_RS07415	0.89	+0.3
1,542,456	-				-0.1
1,542,467	+				+0.4
1,542,467	+				-0.5
1,542,468	-				-0.1
1,542,468	-				+1.9
1,542,468	-				-1.2
1,542,468	-				+0.9
1,542,468	-				-0.5
1,542,476	+				+0.3
1,542,476	+				-1.4
1,542,476	+				-0.5
1,542,477	-				-0.6
1,542,477	-				-0.8
1,542,477	-				-0.1
1,542,477	-				+1.9
1,542,477	-				+1.2
1,542,484	+				-0.7
1,542,484	+				+0.7
1,542,485	-				-0.4
1,542,485	-				+0.9
1,542,485	-				-0.1
1,542,485	-				-0.9
1,542,504	+				-1.2
1,542,525	+				-1.4
1,542,568	+				-0.1
1,542,568	+				+0.5
1,542,568	+				-0.6
1,542,568	+				-0.1
1,542,568	+				-1.4
1,542,569	-				-1.4
1,542,569	-				-1.5
1,542,571	+				-0.5
1,542,572	-				+0.2
1,542,606	+				-0.1
1,542,606	+				+1.1
1,542,606	+				-0.4
1,542,606	+				-0.7
1,542,606	+				-1.1
1,542,606	+				-1.7
1,542,607	-				-0.9
1,542,607	-				-0.4
1,542,607	-				-1.1
1,542,648	-		DZA65_RS07420	0.13	-0.1
1,542,685	+		DZA65_RS07420	0.16	+1.2
1,542,685	+		DZA65_RS07420	0.16	-1.9
1,542,686	-		DZA65_RS07420	0.16	+0.1
1,542,731	+		DZA65_RS07420	0.19	-0.7
1,542,731	+		DZA65_RS07420	0.19	-0.3
1,542,731	+		DZA65_RS07420	0.19	-0.1
1,542,731	+		DZA65_RS07420	0.19	+0.3
1,542,731	+		DZA65_RS07420	0.19	-0.4
1,542,732	-		DZA65_RS07420	0.19	+1.9
1,542,761	+		DZA65_RS07420	0.22	+0.5
1,542,761	+		DZA65_RS07420	0.22	+0.0
1,542,761	+		DZA65_RS07420	0.22	+0.9
1,542,761	+		DZA65_RS07420	0.22	+1.5
1,542,762	-		DZA65_RS07420	0.22	-0.1
1,542,762	-		DZA65_RS07420	0.22	+0.9
1,542,762	-		DZA65_RS07420	0.22	-0.3
1,542,762	-		DZA65_RS07420	0.22	-0.4
1,542,762	-		DZA65_RS07420	0.22	-0.4
1,542,762	-		DZA65_RS07420	0.22	+0.9
1,542,762	-		DZA65_RS07420	0.22	-0.5
1,542,762	-		DZA65_RS07420	0.22	+0.4
1,542,762	-		DZA65_RS07420	0.22	+0.5
1,542,762	-		DZA65_RS07420	0.22	-0.7
1,542,850	-		DZA65_RS07420	0.28	+0.2
1,542,850	-		DZA65_RS07420	0.28	+0.3
1,542,862	+		DZA65_RS07420	0.29	-1.4
1,542,862	+		DZA65_RS07420	0.29	+0.2
1,542,863	-		DZA65_RS07420	0.29	-0.7
1,542,863	-		DZA65_RS07420	0.29	-0.3