Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS05400 and DZA65_RS05405 are separated by 57 nucleotides DZA65_RS05405 and DZA65_RS05410 are separated by 53 nucleotides
DZA65_RS05400: DZA65_RS05400 - 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM, at 1,110,331 to 1,111,431
_RS05400
DZA65_RS05405: DZA65_RS05405 - flap endonuclease Xni, at 1,111,489 to 1,112,250
_RS05405
DZA65_RS05410: DZA65_RS05410 - LOG family protein, at 1,112,304 to 1,113,668
_RS05410
Position (kb) 1111
1112
1113 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1110.506 kb on + strand, within DZA65_RS05400 at 1110.507 kb on - strand, within DZA65_RS05400 at 1110.545 kb on + strand, within DZA65_RS05400 at 1110.546 kb on - strand, within DZA65_RS05400 at 1110.546 kb on - strand, within DZA65_RS05400 at 1110.546 kb on - strand, within DZA65_RS05400 at 1110.546 kb on - strand, within DZA65_RS05400 at 1110.546 kb on - strand, within DZA65_RS05400 at 1110.786 kb on + strand, within DZA65_RS05400 at 1110.786 kb on + strand, within DZA65_RS05400 at 1110.786 kb on + strand, within DZA65_RS05400 at 1110.787 kb on - strand, within DZA65_RS05400 at 1110.787 kb on - strand, within DZA65_RS05400 at 1110.805 kb on + strand, within DZA65_RS05400 at 1110.805 kb on + strand, within DZA65_RS05400 at 1110.805 kb on + strand, within DZA65_RS05400 at 1110.805 kb on + strand, within DZA65_RS05400 at 1110.805 kb on + strand, within DZA65_RS05400 at 1110.805 kb on + strand, within DZA65_RS05400 at 1110.806 kb on - strand, within DZA65_RS05400 at 1110.806 kb on - strand, within DZA65_RS05400 at 1110.806 kb on - strand, within DZA65_RS05400 at 1110.806 kb on - strand, within DZA65_RS05400 at 1110.820 kb on + strand, within DZA65_RS05400 at 1110.820 kb on + strand, within DZA65_RS05400 at 1110.820 kb on + strand, within DZA65_RS05400 at 1110.821 kb on - strand, within DZA65_RS05400 at 1110.821 kb on - strand, within DZA65_RS05400 at 1110.828 kb on + strand, within DZA65_RS05400 at 1110.844 kb on + strand, within DZA65_RS05400 at 1110.844 kb on + strand, within DZA65_RS05400 at 1110.844 kb on + strand, within DZA65_RS05400 at 1110.844 kb on + strand, within DZA65_RS05400 at 1110.844 kb on + strand, within DZA65_RS05400 at 1110.844 kb on + strand, within DZA65_RS05400 at 1110.844 kb on + strand, within DZA65_RS05400 at 1110.844 kb on + strand at 1110.845 kb on - strand, within DZA65_RS05400 at 1110.845 kb on - strand, within DZA65_RS05400 at 1110.845 kb on - strand, within DZA65_RS05400 at 1110.845 kb on - strand, within DZA65_RS05400 at 1110.845 kb on - strand, within DZA65_RS05400 at 1110.845 kb on - strand, within DZA65_RS05400 at 1110.845 kb on - strand, within DZA65_RS05400 at 1110.845 kb on - strand, within DZA65_RS05400 at 1110.847 kb on - strand at 1110.966 kb on + strand, within DZA65_RS05400 at 1110.967 kb on - strand, within DZA65_RS05400 at 1110.967 kb on - strand, within DZA65_RS05400 at 1110.967 kb on - strand, within DZA65_RS05400 at 1111.009 kb on + strand, within DZA65_RS05400 at 1111.010 kb on - strand, within DZA65_RS05400 at 1111.010 kb on - strand, within DZA65_RS05400 at 1111.029 kb on + strand, within DZA65_RS05400 at 1111.029 kb on + strand, within DZA65_RS05400 at 1111.030 kb on - strand, within DZA65_RS05400 at 1111.030 kb on - strand, within DZA65_RS05400 at 1111.030 kb on - strand, within DZA65_RS05400 at 1111.030 kb on - strand, within DZA65_RS05400 at 1111.140 kb on + strand, within DZA65_RS05400 at 1111.140 kb on + strand, within DZA65_RS05400 at 1111.140 kb on + strand, within DZA65_RS05400 at 1111.140 kb on + strand, within DZA65_RS05400 at 1111.141 kb on - strand at 1111.141 kb on - strand, within DZA65_RS05400 at 1111.141 kb on - strand, within DZA65_RS05400 at 1111.141 kb on - strand, within DZA65_RS05400 at 1111.141 kb on - strand, within DZA65_RS05400 at 1111.141 kb on - strand, within DZA65_RS05400 at 1111.141 kb on - strand, within DZA65_RS05400 at 1111.144 kb on + strand, within DZA65_RS05400 at 1111.144 kb on + strand, within DZA65_RS05400 at 1111.145 kb on - strand, within DZA65_RS05400 at 1111.145 kb on - strand, within DZA65_RS05400 at 1111.145 kb on - strand, within DZA65_RS05400 at 1111.145 kb on - strand, within DZA65_RS05400 at 1111.145 kb on - strand, within DZA65_RS05400 at 1111.162 kb on - strand, within DZA65_RS05400 at 1111.245 kb on + strand, within DZA65_RS05400 at 1111.245 kb on + strand, within DZA65_RS05400 at 1111.246 kb on - strand, within DZA65_RS05400 at 1111.246 kb on - strand, within DZA65_RS05400 at 1111.246 kb on - strand, within DZA65_RS05400 at 1111.246 kb on - strand, within DZA65_RS05400 at 1111.354 kb on + strand at 1111.354 kb on + strand at 1111.392 kb on + strand at 1111.392 kb on + strand at 1111.393 kb on - strand at 1111.393 kb on - strand at 1111.510 kb on + strand at 1111.511 kb on - strand at 1111.511 kb on - strand at 1111.534 kb on + strand at 1111.575 kb on - strand, within DZA65_RS05405 at 1111.621 kb on + strand, within DZA65_RS05405 at 1111.640 kb on + strand, within DZA65_RS05405 at 1111.640 kb on + strand, within DZA65_RS05405 at 1111.640 kb on + strand, within DZA65_RS05405 at 1111.641 kb on - strand, within DZA65_RS05405 at 1111.642 kb on + strand, within DZA65_RS05405 at 1111.643 kb on - strand, within DZA65_RS05405 at 1111.643 kb on - strand, within DZA65_RS05405 at 1111.756 kb on + strand, within DZA65_RS05405 at 1111.823 kb on + strand, within DZA65_RS05405 at 1111.824 kb on - strand, within DZA65_RS05405 at 1111.852 kb on + strand, within DZA65_RS05405 at 1111.853 kb on - strand, within DZA65_RS05405 at 1111.862 kb on + strand, within DZA65_RS05405 at 1111.862 kb on + strand, within DZA65_RS05405 at 1111.863 kb on - strand, within DZA65_RS05405 at 1111.887 kb on + strand, within DZA65_RS05405 at 1111.888 kb on - strand, within DZA65_RS05405 at 1112.054 kb on + strand at 1112.055 kb on - strand, within DZA65_RS05405 at 1112.055 kb on - strand, within DZA65_RS05405 at 1112.055 kb on - strand, within DZA65_RS05405 at 1112.140 kb on + strand, within DZA65_RS05405 at 1112.140 kb on + strand, within DZA65_RS05405 at 1112.140 kb on + strand, within DZA65_RS05405 at 1112.140 kb on + strand, within DZA65_RS05405 at 1112.141 kb on - strand, within DZA65_RS05405 at 1112.141 kb on - strand, within DZA65_RS05405 at 1112.141 kb on - strand, within DZA65_RS05405 at 1112.141 kb on - strand, within DZA65_RS05405 at 1112.143 kb on + strand, within DZA65_RS05405 at 1112.143 kb on + strand, within DZA65_RS05405 at 1112.143 kb on + strand, within DZA65_RS05405 at 1112.143 kb on + strand, within DZA65_RS05405 at 1112.191 kb on + strand at 1112.191 kb on + strand at 1112.232 kb on + strand at 1112.233 kb on - strand at 1112.233 kb on - strand at 1112.233 kb on - strand at 1112.233 kb on - strand at 1112.242 kb on + strand at 1112.242 kb on + strand at 1112.242 kb on + strand at 1112.243 kb on - strand at 1112.243 kb on - strand at 1112.243 kb on - strand at 1112.243 kb on - strand at 1112.243 kb on - strand at 1112.243 kb on - strand at 1112.243 kb on - strand at 1112.243 kb on - strand at 1112.321 kb on - strand at 1112.332 kb on + strand at 1112.332 kb on + strand at 1112.332 kb on + strand at 1112.332 kb on + strand at 1112.332 kb on + strand at 1112.333 kb on - strand at 1112.333 kb on - strand at 1112.333 kb on - strand at 1112.333 kb on - strand at 1112.354 kb on + strand at 1112.354 kb on + strand at 1112.355 kb on - strand at 1112.355 kb on - strand at 1112.428 kb on + strand at 1112.437 kb on + strand at 1112.629 kb on + strand, within DZA65_RS05410 at 1112.629 kb on + strand, within DZA65_RS05410 at 1112.629 kb on + strand, within DZA65_RS05410 at 1112.630 kb on - strand, within DZA65_RS05410 at 1112.726 kb on - strand, within DZA65_RS05410 at 1112.726 kb on - strand, within DZA65_RS05410 at 1112.775 kb on + strand, within DZA65_RS05410 at 1112.785 kb on + strand, within DZA65_RS05410 at 1112.785 kb on + strand, within DZA65_RS05410 at 1112.785 kb on + strand, within DZA65_RS05410 at 1112.785 kb on + strand, within DZA65_RS05410 at 1112.786 kb on - strand, within DZA65_RS05410 at 1112.786 kb on - strand, within DZA65_RS05410 at 1112.786 kb on - strand, within DZA65_RS05410 at 1112.855 kb on + strand, within DZA65_RS05410 at 1112.855 kb on + strand, within DZA65_RS05410 at 1112.856 kb on - strand, within DZA65_RS05410 at 1112.856 kb on - strand, within DZA65_RS05410 at 1112.856 kb on - strand, within DZA65_RS05410 at 1112.869 kb on + strand, within DZA65_RS05410 at 1112.870 kb on - strand, within DZA65_RS05410 at 1112.870 kb on - strand, within DZA65_RS05410 at 1112.870 kb on - strand, within DZA65_RS05410 at 1112.870 kb on - strand, within DZA65_RS05410 at 1112.983 kb on - strand, within DZA65_RS05410 at 1112.983 kb on - strand, within DZA65_RS05410 at 1113.035 kb on + strand, within DZA65_RS05410 at 1113.036 kb on - strand, within DZA65_RS05410 at 1113.141 kb on + strand, within DZA65_RS05410 at 1113.142 kb on - strand, within DZA65_RS05410 at 1113.142 kb on - strand, within DZA65_RS05410 at 1113.172 kb on + strand, within DZA65_RS05410 at 1113.172 kb on + strand, within DZA65_RS05410 at 1113.172 kb on + strand, within DZA65_RS05410 at 1113.172 kb on + strand, within DZA65_RS05410 at 1113.173 kb on - strand, within DZA65_RS05410 at 1113.178 kb on + strand at 1113.178 kb on + strand, within DZA65_RS05410
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,110,506 + DZA65_RS05400 0.16 +1.0 1,110,507 - DZA65_RS05400 0.16 -0.3 1,110,545 + DZA65_RS05400 0.19 -0.9 1,110,546 - DZA65_RS05400 0.20 +0.2 1,110,546 - DZA65_RS05400 0.20 -0.3 1,110,546 - DZA65_RS05400 0.20 -1.1 1,110,546 - DZA65_RS05400 0.20 -1.0 1,110,546 - DZA65_RS05400 0.20 -1.6 1,110,786 + DZA65_RS05400 0.41 -0.8 1,110,786 + DZA65_RS05400 0.41 +0.0 1,110,786 + DZA65_RS05400 0.41 -0.8 1,110,787 - DZA65_RS05400 0.41 -1.3 1,110,787 - DZA65_RS05400 0.41 -0.4 1,110,805 + DZA65_RS05400 0.43 +0.6 1,110,805 + DZA65_RS05400 0.43 +2.0 1,110,805 + DZA65_RS05400 0.43 -1.3 1,110,805 + DZA65_RS05400 0.43 -0.3 1,110,805 + DZA65_RS05400 0.43 +1.4 1,110,805 + DZA65_RS05400 0.43 -0.8 1,110,806 - DZA65_RS05400 0.43 -0.8 1,110,806 - DZA65_RS05400 0.43 -1.0 1,110,806 - DZA65_RS05400 0.43 -1.3 1,110,806 - DZA65_RS05400 0.43 -0.4 1,110,820 + DZA65_RS05400 0.44 +0.0 1,110,820 + DZA65_RS05400 0.44 +1.0 1,110,820 + DZA65_RS05400 0.44 +0.2 1,110,821 - DZA65_RS05400 0.45 -0.5 1,110,821 - DZA65_RS05400 0.45 -0.6 1,110,828 + DZA65_RS05400 0.45 -0.6 1,110,844 + DZA65_RS05400 0.47 -0.1 1,110,844 + DZA65_RS05400 0.47 +0.7 1,110,844 + DZA65_RS05400 0.47 +3.6 1,110,844 + DZA65_RS05400 0.47 -0.1 1,110,844 + DZA65_RS05400 0.47 +0.4 1,110,844 + DZA65_RS05400 0.47 -1.6 1,110,844 + DZA65_RS05400 0.47 +0.7 1,110,844 + -1.6 1,110,845 - DZA65_RS05400 0.47 -0.1 1,110,845 - DZA65_RS05400 0.47 -1.3 1,110,845 - DZA65_RS05400 0.47 -1.7 1,110,845 - DZA65_RS05400 0.47 -0.4 1,110,845 - DZA65_RS05400 0.47 -0.3 1,110,845 - DZA65_RS05400 0.47 +0.3 1,110,845 - DZA65_RS05400 0.47 +1.0 1,110,845 - DZA65_RS05400 0.47 +0.0 1,110,847 - +0.0 1,110,966 + DZA65_RS05400 0.58 -1.2 1,110,967 - DZA65_RS05400 0.58 +0.0 1,110,967 - DZA65_RS05400 0.58 +0.0 1,110,967 - DZA65_RS05400 0.58 -1.0 1,111,009 + DZA65_RS05400 0.62 -1.0 1,111,010 - DZA65_RS05400 0.62 -0.6 1,111,010 - DZA65_RS05400 0.62 -0.6 1,111,029 + DZA65_RS05400 0.63 +2.0 1,111,029 + DZA65_RS05400 0.63 -0.4 1,111,030 - DZA65_RS05400 0.63 +1.6 1,111,030 - DZA65_RS05400 0.63 -2.0 1,111,030 - DZA65_RS05400 0.63 +0.5 1,111,030 - DZA65_RS05400 0.63 -0.6 1,111,140 + DZA65_RS05400 0.73 -0.2 1,111,140 + DZA65_RS05400 0.73 -0.6 1,111,140 + DZA65_RS05400 0.73 -2.4 1,111,140 + DZA65_RS05400 0.73 -2.3 1,111,141 - +0.0 1,111,141 - DZA65_RS05400 0.74 +1.0 1,111,141 - DZA65_RS05400 0.74 -1.2 1,111,141 - DZA65_RS05400 0.74 +0.0 1,111,141 - DZA65_RS05400 0.74 +0.0 1,111,141 - DZA65_RS05400 0.74 -0.3 1,111,141 - DZA65_RS05400 0.74 -0.9 1,111,144 + DZA65_RS05400 0.74 +0.3 1,111,144 + DZA65_RS05400 0.74 -1.8 1,111,145 - DZA65_RS05400 0.74 +1.4 1,111,145 - DZA65_RS05400 0.74 -0.6 1,111,145 - DZA65_RS05400 0.74 -0.6 1,111,145 - DZA65_RS05400 0.74 -0.4 1,111,145 - DZA65_RS05400 0.74 +0.4 1,111,162 - DZA65_RS05400 0.75 +0.2 1,111,245 + DZA65_RS05400 0.83 -1.2 1,111,245 + DZA65_RS05400 0.83 +0.0 1,111,246 - DZA65_RS05400 0.83 +0.2 1,111,246 - DZA65_RS05400 0.83 -0.8 1,111,246 - DZA65_RS05400 0.83 +0.7 1,111,246 - DZA65_RS05400 0.83 +0.1 1,111,354 + +0.7 1,111,354 + -1.0 1,111,392 + +1.6 1,111,392 + -0.1 1,111,393 - +0.0 1,111,393 - +0.3 1,111,510 + -0.5 1,111,511 - +0.2 1,111,511 - -2.6 1,111,534 + -0.3 1,111,575 - DZA65_RS05405 0.11 +0.3 1,111,621 + DZA65_RS05405 0.17 +1.6 1,111,640 + DZA65_RS05405 0.20 -0.1 1,111,640 + DZA65_RS05405 0.20 +0.0 1,111,640 + DZA65_RS05405 0.20 -0.3 1,111,641 - DZA65_RS05405 0.20 +1.5 1,111,642 + DZA65_RS05405 0.20 -1.0 1,111,643 - DZA65_RS05405 0.20 +1.4 1,111,643 - DZA65_RS05405 0.20 +0.4 1,111,756 + DZA65_RS05405 0.35 +1.7 1,111,823 + DZA65_RS05405 0.44 -0.6 1,111,824 - DZA65_RS05405 0.44 -0.4 1,111,852 + DZA65_RS05405 0.48 -2.0 1,111,853 - DZA65_RS05405 0.48 +2.6 1,111,862 + DZA65_RS05405 0.49 -0.2 1,111,862 + DZA65_RS05405 0.49 +0.4 1,111,863 - DZA65_RS05405 0.49 -1.0 1,111,887 + DZA65_RS05405 0.52 +0.3 1,111,888 - DZA65_RS05405 0.52 +2.0 1,112,054 + +0.3 1,112,055 - DZA65_RS05405 0.74 +1.0 1,112,055 - DZA65_RS05405 0.74 -0.6 1,112,055 - DZA65_RS05405 0.74 -2.6 1,112,140 + DZA65_RS05405 0.85 +0.3 1,112,140 + DZA65_RS05405 0.85 -0.3 1,112,140 + DZA65_RS05405 0.85 +0.8 1,112,140 + DZA65_RS05405 0.85 +0.8 1,112,141 - DZA65_RS05405 0.86 -0.3 1,112,141 - DZA65_RS05405 0.86 +1.2 1,112,141 - DZA65_RS05405 0.86 -0.3 1,112,141 - DZA65_RS05405 0.86 -0.4 1,112,143 + DZA65_RS05405 0.86 -0.5 1,112,143 + DZA65_RS05405 0.86 -0.3 1,112,143 + DZA65_RS05405 0.86 -1.0 1,112,143 + DZA65_RS05405 0.86 +0.6 1,112,191 + -1.1 1,112,191 + -0.4 1,112,232 + +0.0 1,112,233 - +0.7 1,112,233 - -2.4 1,112,233 - +1.0 1,112,233 - -0.8 1,112,242 + -0.0 1,112,242 + -0.1 1,112,242 + -1.0 1,112,243 - -0.2 1,112,243 - -0.4 1,112,243 - -1.0 1,112,243 - -0.7 1,112,243 - -1.2 1,112,243 - -0.3 1,112,243 - -1.6 1,112,243 - +0.0 1,112,321 - +0.0 1,112,332 + +0.4 1,112,332 + +1.0 1,112,332 + -0.6 1,112,332 + -0.6 1,112,332 + +1.8 1,112,333 - -0.6 1,112,333 - -1.6 1,112,333 - -0.1 1,112,333 - -2.8 1,112,354 + -1.6 1,112,354 + -0.9 1,112,355 - -0.8 1,112,355 - -1.1 1,112,428 + +1.5 1,112,437 + -1.3 1,112,629 + DZA65_RS05410 0.24 -0.7 1,112,629 + DZA65_RS05410 0.24 -0.6 1,112,629 + DZA65_RS05410 0.24 +0.0 1,112,630 - DZA65_RS05410 0.24 -1.6 1,112,726 - DZA65_RS05410 0.31 -1.3 1,112,726 - DZA65_RS05410 0.31 +0.7 1,112,775 + DZA65_RS05410 0.35 -1.6 1,112,785 + DZA65_RS05410 0.35 -0.6 1,112,785 + DZA65_RS05410 0.35 +1.3 1,112,785 + DZA65_RS05410 0.35 +1.6 1,112,785 + DZA65_RS05410 0.35 +0.0 1,112,786 - DZA65_RS05410 0.35 +2.0 1,112,786 - DZA65_RS05410 0.35 -0.1 1,112,786 - DZA65_RS05410 0.35 -1.3 1,112,855 + DZA65_RS05410 0.40 -2.2 1,112,855 + DZA65_RS05410 0.40 -1.6 1,112,856 - DZA65_RS05410 0.40 -0.3 1,112,856 - DZA65_RS05410 0.40 -0.4 1,112,856 - DZA65_RS05410 0.40 +0.3 1,112,869 + DZA65_RS05410 0.41 -0.3 1,112,870 - DZA65_RS05410 0.41 -0.5 1,112,870 - DZA65_RS05410 0.41 +0.0 1,112,870 - DZA65_RS05410 0.41 +0.5 1,112,870 - DZA65_RS05410 0.41 +0.0 1,112,983 - DZA65_RS05410 0.50 -0.9 1,112,983 - DZA65_RS05410 0.50 -0.2 1,113,035 + DZA65_RS05410 0.54 -0.4 1,113,036 - DZA65_RS05410 0.54 -0.3 1,113,141 + DZA65_RS05410 0.61 -0.7 1,113,142 - DZA65_RS05410 0.61 -1.3 1,113,142 - DZA65_RS05410 0.61 -0.3 1,113,172 + DZA65_RS05410 0.64 -1.3 1,113,172 + DZA65_RS05410 0.64 -0.6 1,113,172 + DZA65_RS05410 0.64 -0.6 1,113,172 + DZA65_RS05410 0.64 -0.4 1,113,173 - DZA65_RS05410 0.64 -0.6 1,113,178 + +1.6 1,113,178 + DZA65_RS05410 0.64 -0.6
Or see this region's nucleotide sequence