Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04495 and DZA65_RS04500 are separated by 9 nucleotides DZA65_RS04500 and DZA65_RS04505 overlap by 4 nucleotides DZA65_RS04505 and DZA65_RS04510 are separated by 58 nucleotides
DZA65_RS04495: DZA65_RS04495 - ABC transporter ATP-binding protein, at 936,884 to 937,933
_RS04495
DZA65_RS04500: DZA65_RS04500 - carbohydrate ABC transporter permease, at 937,943 to 938,770
_RS04500
DZA65_RS04505: DZA65_RS04505 - sugar ABC transporter permease, at 938,767 to 939,639
_RS04505
DZA65_RS04510: DZA65_RS04510 - ABC transporter substrate-binding protein, at 939,698 to 941,002
_RS04510
Position (kb) 937
938
939 Strain fitness (log2 ratio) -2
-1
0
1
2 at 937.074 kb on + strand, within DZA65_RS04495 at 937.108 kb on + strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.344 kb on + strand, within DZA65_RS04495 at 937.344 kb on + strand, within DZA65_RS04495 at 937.344 kb on + strand, within DZA65_RS04495 at 937.344 kb on + strand, within DZA65_RS04495 at 937.345 kb on - strand, within DZA65_RS04495 at 937.345 kb on - strand, within DZA65_RS04495 at 937.345 kb on - strand, within DZA65_RS04495 at 937.345 kb on - strand, within DZA65_RS04495 at 937.399 kb on + strand, within DZA65_RS04495 at 937.443 kb on + strand, within DZA65_RS04495 at 937.443 kb on + strand, within DZA65_RS04495 at 937.443 kb on + strand, within DZA65_RS04495 at 937.443 kb on + strand, within DZA65_RS04495 at 937.444 kb on - strand, within DZA65_RS04495 at 937.444 kb on - strand, within DZA65_RS04495 at 937.444 kb on - strand, within DZA65_RS04495 at 937.444 kb on - strand, within DZA65_RS04495 at 937.621 kb on + strand, within DZA65_RS04495 at 937.622 kb on - strand, within DZA65_RS04495 at 937.622 kb on - strand, within DZA65_RS04495 at 937.675 kb on - strand, within DZA65_RS04495 at 937.683 kb on + strand, within DZA65_RS04495 at 937.684 kb on - strand, within DZA65_RS04495 at 937.736 kb on - strand, within DZA65_RS04495 at 937.736 kb on - strand, within DZA65_RS04495 at 937.916 kb on + strand at 937.916 kb on + strand at 937.916 kb on + strand at 937.917 kb on - strand at 937.917 kb on - strand at 937.917 kb on - strand at 937.922 kb on + strand at 937.922 kb on + strand at 937.923 kb on - strand at 937.923 kb on - strand at 937.923 kb on - strand at 937.923 kb on - strand at 937.944 kb on + strand at 937.944 kb on + strand at 937.944 kb on + strand at 937.945 kb on - strand at 937.945 kb on - strand at 937.945 kb on - strand at 937.945 kb on - strand at 937.945 kb on - strand at 937.977 kb on + strand at 937.977 kb on + strand at 937.978 kb on - strand at 937.978 kb on - strand at 937.978 kb on - strand at 937.978 kb on - strand at 937.978 kb on - strand at 938.052 kb on + strand, within DZA65_RS04500 at 938.052 kb on + strand at 938.053 kb on - strand, within DZA65_RS04500 at 938.053 kb on - strand, within DZA65_RS04500 at 938.121 kb on + strand, within DZA65_RS04500 at 938.121 kb on + strand, within DZA65_RS04500 at 938.121 kb on + strand, within DZA65_RS04500 at 938.121 kb on + strand, within DZA65_RS04500 at 938.121 kb on + strand, within DZA65_RS04500 at 938.122 kb on - strand, within DZA65_RS04500 at 938.122 kb on - strand, within DZA65_RS04500 at 938.122 kb on - strand, within DZA65_RS04500 at 938.215 kb on - strand, within DZA65_RS04500 at 938.215 kb on - strand, within DZA65_RS04500 at 938.287 kb on + strand, within DZA65_RS04500 at 938.323 kb on + strand, within DZA65_RS04500 at 938.324 kb on - strand, within DZA65_RS04500 at 938.324 kb on - strand, within DZA65_RS04500 at 938.325 kb on + strand, within DZA65_RS04500 at 938.325 kb on + strand, within DZA65_RS04500 at 938.325 kb on + strand, within DZA65_RS04500 at 938.325 kb on + strand, within DZA65_RS04500 at 938.325 kb on + strand, within DZA65_RS04500 at 938.325 kb on + strand, within DZA65_RS04500 at 938.326 kb on - strand, within DZA65_RS04500 at 938.326 kb on - strand, within DZA65_RS04500 at 938.326 kb on - strand, within DZA65_RS04500 at 938.334 kb on + strand, within DZA65_RS04500 at 938.334 kb on + strand, within DZA65_RS04500 at 938.335 kb on - strand, within DZA65_RS04500 at 938.392 kb on - strand, within DZA65_RS04500 at 938.392 kb on - strand, within DZA65_RS04500 at 938.558 kb on - strand, within DZA65_RS04500 at 938.558 kb on - strand, within DZA65_RS04500 at 938.560 kb on + strand, within DZA65_RS04500 at 938.560 kb on + strand, within DZA65_RS04500 at 938.668 kb on + strand, within DZA65_RS04500 at 938.668 kb on + strand, within DZA65_RS04500 at 938.668 kb on + strand, within DZA65_RS04500 at 938.715 kb on - strand at 938.741 kb on + strand at 938.741 kb on + strand at 938.742 kb on - strand at 938.742 kb on - strand at 938.742 kb on - strand at 938.742 kb on - strand at 938.804 kb on + strand at 938.804 kb on + strand at 938.894 kb on + strand, within DZA65_RS04505 at 938.894 kb on + strand, within DZA65_RS04505 at 938.894 kb on + strand, within DZA65_RS04505 at 938.894 kb on + strand, within DZA65_RS04505 at 938.894 kb on + strand, within DZA65_RS04505 at 938.894 kb on + strand, within DZA65_RS04505 at 938.894 kb on + strand, within DZA65_RS04505 at 938.894 kb on + strand, within DZA65_RS04505 at 938.894 kb on + strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.895 kb on - strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.898 kb on + strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.899 kb on - strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand, within DZA65_RS04505 at 938.900 kb on + strand at 938.900 kb on + strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.901 kb on - strand, within DZA65_RS04505 at 938.952 kb on - strand, within DZA65_RS04505 at 938.952 kb on - strand, within DZA65_RS04505 at 938.976 kb on + strand, within DZA65_RS04505 at 939.007 kb on - strand, within DZA65_RS04505 at 939.007 kb on - strand, within DZA65_RS04505 at 939.007 kb on - strand, within DZA65_RS04505 at 939.038 kb on + strand, within DZA65_RS04505 at 939.038 kb on + strand, within DZA65_RS04505 at 939.039 kb on - strand, within DZA65_RS04505 at 939.039 kb on - strand, within DZA65_RS04505 at 939.039 kb on - strand, within DZA65_RS04505 at 939.109 kb on + strand, within DZA65_RS04505 at 939.125 kb on - strand, within DZA65_RS04505 at 939.189 kb on - strand, within DZA65_RS04505 at 939.240 kb on + strand, within DZA65_RS04505 at 939.241 kb on - strand, within DZA65_RS04505 at 939.241 kb on - strand, within DZA65_RS04505 at 939.241 kb on - strand, within DZA65_RS04505 at 939.260 kb on + strand, within DZA65_RS04505 at 939.292 kb on + strand, within DZA65_RS04505 at 939.292 kb on + strand, within DZA65_RS04505 at 939.292 kb on + strand, within DZA65_RS04505 at 939.293 kb on - strand, within DZA65_RS04505 at 939.317 kb on + strand, within DZA65_RS04505 at 939.479 kb on + strand, within DZA65_RS04505 at 939.480 kb on - strand, within DZA65_RS04505 at 939.518 kb on + strand, within DZA65_RS04505 at 939.539 kb on + strand, within DZA65_RS04505 at 939.539 kb on + strand, within DZA65_RS04505 at 939.540 kb on - strand, within DZA65_RS04505 at 939.540 kb on - strand, within DZA65_RS04505 at 939.564 kb on - strand at 939.577 kb on + strand at 939.577 kb on + strand at 939.699 kb on + strand at 939.699 kb on + strand at 939.699 kb on + strand at 939.700 kb on - strand at 939.700 kb on - strand at 939.707 kb on + strand at 939.708 kb on - strand at 939.708 kb on - strand at 939.708 kb on - strand at 939.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 937,074 + DZA65_RS04495 0.18 +1.4 937,108 + DZA65_RS04495 0.21 +0.7 937,109 - DZA65_RS04495 0.21 -1.8 937,109 - DZA65_RS04495 0.21 +0.2 937,109 - DZA65_RS04495 0.21 +0.5 937,109 - DZA65_RS04495 0.21 -0.3 937,344 + DZA65_RS04495 0.44 +0.0 937,344 + DZA65_RS04495 0.44 +0.3 937,344 + DZA65_RS04495 0.44 +0.3 937,344 + DZA65_RS04495 0.44 +0.0 937,345 - DZA65_RS04495 0.44 -1.5 937,345 - DZA65_RS04495 0.44 +0.2 937,345 - DZA65_RS04495 0.44 -1.0 937,345 - DZA65_RS04495 0.44 +0.6 937,399 + DZA65_RS04495 0.49 -0.7 937,443 + DZA65_RS04495 0.53 +0.7 937,443 + DZA65_RS04495 0.53 -0.4 937,443 + DZA65_RS04495 0.53 +1.0 937,443 + DZA65_RS04495 0.53 -0.3 937,444 - DZA65_RS04495 0.53 +0.4 937,444 - DZA65_RS04495 0.53 -0.3 937,444 - DZA65_RS04495 0.53 +0.0 937,444 - DZA65_RS04495 0.53 +1.9 937,621 + DZA65_RS04495 0.70 -1.4 937,622 - DZA65_RS04495 0.70 +0.9 937,622 - DZA65_RS04495 0.70 +1.0 937,675 - DZA65_RS04495 0.75 -0.5 937,683 + DZA65_RS04495 0.76 +0.8 937,684 - DZA65_RS04495 0.76 +0.6 937,736 - DZA65_RS04495 0.81 -0.3 937,736 - DZA65_RS04495 0.81 -1.0 937,916 + +1.0 937,916 + -0.3 937,916 + +0.0 937,917 - -1.0 937,917 - -1.1 937,917 - -1.0 937,922 + -1.0 937,922 + +0.5 937,923 - -0.5 937,923 - -0.5 937,923 - +0.5 937,923 - +0.5 937,944 + -1.0 937,944 + -0.1 937,944 + +0.2 937,945 - -1.0 937,945 - -2.0 937,945 - +1.3 937,945 - -1.5 937,945 - -1.5 937,977 + +1.0 937,977 + -0.5 937,978 - -0.3 937,978 - -1.2 937,978 - -0.5 937,978 - -0.5 937,978 - +0.4 938,052 + DZA65_RS04500 0.13 -2.3 938,052 + +1.4 938,053 - DZA65_RS04500 0.13 -0.2 938,053 - DZA65_RS04500 0.13 -0.3 938,121 + DZA65_RS04500 0.21 -1.5 938,121 + DZA65_RS04500 0.21 -2.0 938,121 + DZA65_RS04500 0.21 +0.0 938,121 + DZA65_RS04500 0.21 +0.0 938,121 + DZA65_RS04500 0.21 +0.3 938,122 - DZA65_RS04500 0.22 +0.2 938,122 - DZA65_RS04500 0.22 -0.1 938,122 - DZA65_RS04500 0.22 -0.4 938,215 - DZA65_RS04500 0.33 -0.1 938,215 - DZA65_RS04500 0.33 +0.8 938,287 + DZA65_RS04500 0.42 +0.3 938,323 + DZA65_RS04500 0.46 +0.0 938,324 - DZA65_RS04500 0.46 +1.2 938,324 - DZA65_RS04500 0.46 +0.0 938,325 + DZA65_RS04500 0.46 -0.3 938,325 + DZA65_RS04500 0.46 +1.0 938,325 + DZA65_RS04500 0.46 -0.1 938,325 + DZA65_RS04500 0.46 -0.7 938,325 + DZA65_RS04500 0.46 +0.7 938,325 + DZA65_RS04500 0.46 +0.6 938,326 - DZA65_RS04500 0.46 -0.7 938,326 - DZA65_RS04500 0.46 +0.7 938,326 - DZA65_RS04500 0.46 -1.3 938,334 + DZA65_RS04500 0.47 -0.3 938,334 + DZA65_RS04500 0.47 -2.0 938,335 - DZA65_RS04500 0.47 -0.7 938,392 - DZA65_RS04500 0.54 +0.3 938,392 - DZA65_RS04500 0.54 +1.0 938,558 - DZA65_RS04500 0.74 +0.5 938,558 - DZA65_RS04500 0.74 +1.0 938,560 + DZA65_RS04500 0.75 -0.4 938,560 + DZA65_RS04500 0.75 -1.5 938,668 + DZA65_RS04500 0.88 -0.4 938,668 + DZA65_RS04500 0.88 -0.7 938,668 + DZA65_RS04500 0.88 -0.3 938,715 - +0.0 938,741 + -0.5 938,741 + +0.0 938,742 - -0.4 938,742 - +0.3 938,742 - -0.5 938,742 - -1.8 938,804 + -0.2 938,804 + -0.7 938,894 + DZA65_RS04505 0.15 +0.2 938,894 + DZA65_RS04505 0.15 +0.1 938,894 + DZA65_RS04505 0.15 -0.3 938,894 + DZA65_RS04505 0.15 -0.7 938,894 + DZA65_RS04505 0.15 -2.4 938,894 + DZA65_RS04505 0.15 -1.8 938,894 + DZA65_RS04505 0.15 +1.3 938,894 + DZA65_RS04505 0.15 +1.6 938,894 + DZA65_RS04505 0.15 +0.0 938,895 - DZA65_RS04505 0.15 -1.1 938,895 - DZA65_RS04505 0.15 -1.8 938,895 - DZA65_RS04505 0.15 -2.0 938,895 - DZA65_RS04505 0.15 +0.5 938,895 - DZA65_RS04505 0.15 -0.3 938,895 - DZA65_RS04505 0.15 -1.0 938,895 - DZA65_RS04505 0.15 -0.2 938,895 - DZA65_RS04505 0.15 -1.2 938,895 - DZA65_RS04505 0.15 -0.5 938,898 + DZA65_RS04505 0.15 +0.0 938,898 + DZA65_RS04505 0.15 -1.5 938,898 + DZA65_RS04505 0.15 +1.0 938,898 + DZA65_RS04505 0.15 -0.6 938,898 + DZA65_RS04505 0.15 -0.5 938,898 + DZA65_RS04505 0.15 -1.3 938,898 + DZA65_RS04505 0.15 -1.0 938,898 + DZA65_RS04505 0.15 -0.5 938,898 + DZA65_RS04505 0.15 -0.5 938,898 + DZA65_RS04505 0.15 +0.6 938,899 - DZA65_RS04505 0.15 -0.0 938,899 - DZA65_RS04505 0.15 -0.5 938,899 - DZA65_RS04505 0.15 -1.0 938,899 - DZA65_RS04505 0.15 -0.8 938,899 - DZA65_RS04505 0.15 +0.7 938,899 - DZA65_RS04505 0.15 +0.2 938,899 - DZA65_RS04505 0.15 +2.3 938,899 - DZA65_RS04505 0.15 -0.3 938,899 - DZA65_RS04505 0.15 -1.0 938,899 - DZA65_RS04505 0.15 -0.9 938,899 - DZA65_RS04505 0.15 -1.1 938,899 - DZA65_RS04505 0.15 -1.3 938,900 + DZA65_RS04505 0.15 -0.7 938,900 + DZA65_RS04505 0.15 -1.7 938,900 + DZA65_RS04505 0.15 +0.0 938,900 + DZA65_RS04505 0.15 -0.1 938,900 + DZA65_RS04505 0.15 -1.5 938,900 + DZA65_RS04505 0.15 -0.3 938,900 + DZA65_RS04505 0.15 +1.3 938,900 + DZA65_RS04505 0.15 -0.4 938,900 + DZA65_RS04505 0.15 +0.5 938,900 + DZA65_RS04505 0.15 -0.1 938,900 + DZA65_RS04505 0.15 +0.2 938,900 + DZA65_RS04505 0.15 +0.3 938,900 + -1.5 938,900 + DZA65_RS04505 0.15 -0.0 938,901 - DZA65_RS04505 0.15 -0.4 938,901 - DZA65_RS04505 0.15 -0.4 938,901 - DZA65_RS04505 0.15 +0.8 938,901 - DZA65_RS04505 0.15 -0.4 938,901 - DZA65_RS04505 0.15 +0.0 938,901 - DZA65_RS04505 0.15 -0.5 938,901 - DZA65_RS04505 0.15 -1.3 938,901 - DZA65_RS04505 0.15 +1.0 938,901 - DZA65_RS04505 0.15 +1.0 938,901 - DZA65_RS04505 0.15 -1.0 938,901 - DZA65_RS04505 0.15 -0.3 938,901 - DZA65_RS04505 0.15 +1.0 938,901 - DZA65_RS04505 0.15 -0.8 938,901 - DZA65_RS04505 0.15 -0.2 938,952 - DZA65_RS04505 0.21 +2.0 938,952 - DZA65_RS04505 0.21 +1.0 938,976 + DZA65_RS04505 0.24 +0.5 939,007 - DZA65_RS04505 0.27 +1.8 939,007 - DZA65_RS04505 0.27 -0.7 939,007 - DZA65_RS04505 0.27 -0.4 939,038 + DZA65_RS04505 0.31 +0.2 939,038 + DZA65_RS04505 0.31 -0.4 939,039 - DZA65_RS04505 0.31 -1.0 939,039 - DZA65_RS04505 0.31 -0.4 939,039 - DZA65_RS04505 0.31 +0.0 939,109 + DZA65_RS04505 0.39 +0.6 939,125 - DZA65_RS04505 0.41 +0.2 939,189 - DZA65_RS04505 0.48 +1.0 939,240 + DZA65_RS04505 0.54 -1.4 939,241 - DZA65_RS04505 0.54 +0.4 939,241 - DZA65_RS04505 0.54 +0.5 939,241 - DZA65_RS04505 0.54 +1.0 939,260 + DZA65_RS04505 0.56 -0.9 939,292 + DZA65_RS04505 0.60 -0.8 939,292 + DZA65_RS04505 0.60 +0.5 939,292 + DZA65_RS04505 0.60 -1.7 939,293 - DZA65_RS04505 0.60 -1.0 939,317 + DZA65_RS04505 0.63 +0.5 939,479 + DZA65_RS04505 0.82 -0.6 939,480 - DZA65_RS04505 0.82 +0.5 939,518 + DZA65_RS04505 0.86 -0.4 939,539 + DZA65_RS04505 0.88 -0.5 939,539 + DZA65_RS04505 0.88 +0.3 939,540 - DZA65_RS04505 0.89 +0.4 939,540 - DZA65_RS04505 0.89 +0.0 939,564 - -0.6 939,577 + -1.8 939,577 + -1.1 939,699 + +1.5 939,699 + -0.4 939,699 + -2.2 939,700 - -0.5 939,700 - -0.7 939,707 + +1.3 939,708 - -0.3 939,708 - +1.0 939,708 - -2.1 939,708 - -0.1
Or see this region's nucleotide sequence