Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01015 and DZA65_RS01020 are separated by 36 nucleotides DZA65_RS01020 and DZA65_RS01025 are separated by 25 nucleotides DZA65_RS01025 and DZA65_RS01030 are separated by 52 nucleotides DZA65_RS01030 and DZA65_RS01035 are separated by 12 nucleotides
DZA65_RS01015: DZA65_RS01015 - helix-turn-helix transcriptional regulator, at 231,184 to 231,501
_RS01015
DZA65_RS01020: DZA65_RS01020 - YeeE/YedE family protein, at 231,538 to 231,966
_RS01020
DZA65_RS01025: DZA65_RS01025 - membrane protein, at 231,992 to 232,420
_RS01025
DZA65_RS01030: DZA65_RS01030 - acetyl-CoA C-acyltransferase FadA, at 232,473 to 233,636
_RS01030
DZA65_RS01035: DZA65_RS01035 - fatty acid oxidation complex subunit alpha FadB, at 233,649 to 235,838
_RS01035
Position (kb) 232
233
234 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 231.478 kb on + strand at 231.478 kb on + strand at 231.478 kb on + strand at 231.479 kb on - strand at 231.479 kb on - strand at 231.479 kb on - strand at 231.479 kb on - strand at 231.479 kb on - strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.499 kb on + strand at 231.499 kb on + strand at 231.499 kb on + strand at 231.500 kb on - strand at 231.500 kb on - strand at 231.500 kb on - strand at 231.549 kb on + strand at 231.550 kb on - strand at 231.550 kb on - strand at 231.588 kb on + strand, within DZA65_RS01020 at 231.589 kb on - strand, within DZA65_RS01020 at 231.624 kb on - strand, within DZA65_RS01020 at 231.776 kb on + strand, within DZA65_RS01020 at 232.002 kb on + strand at 232.002 kb on + strand at 232.002 kb on + strand at 232.002 kb on + strand at 232.003 kb on - strand at 232.003 kb on - strand at 232.003 kb on - strand at 232.091 kb on - strand, within DZA65_RS01025 at 232.219 kb on - strand, within DZA65_RS01025 at 232.234 kb on + strand, within DZA65_RS01025 at 232.323 kb on - strand, within DZA65_RS01025 at 232.323 kb on - strand, within DZA65_RS01025 at 232.379 kb on + strand at 232.379 kb on + strand at 232.379 kb on + strand at 232.379 kb on + strand at 232.379 kb on + strand at 232.379 kb on + strand at 232.380 kb on - strand at 232.380 kb on - strand at 232.380 kb on - strand at 232.380 kb on - strand at 232.380 kb on - strand at 232.380 kb on - strand at 232.393 kb on + strand at 232.474 kb on + strand at 232.475 kb on - strand at 232.476 kb on + strand at 232.477 kb on - strand at 232.517 kb on + strand at 232.518 kb on - strand at 232.518 kb on - strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.523 kb on + strand at 232.524 kb on - strand at 232.524 kb on - strand at 232.524 kb on - strand at 232.524 kb on - strand at 232.524 kb on - strand at 232.524 kb on - strand at 232.524 kb on - strand at 232.565 kb on + strand at 232.646 kb on + strand, within DZA65_RS01030 at 232.740 kb on + strand, within DZA65_RS01030 at 232.740 kb on + strand, within DZA65_RS01030 at 232.761 kb on + strand, within DZA65_RS01030 at 232.762 kb on - strand, within DZA65_RS01030 at 232.762 kb on - strand, within DZA65_RS01030 at 232.762 kb on - strand, within DZA65_RS01030 at 232.991 kb on + strand, within DZA65_RS01030 at 233.021 kb on - strand, within DZA65_RS01030 at 233.069 kb on + strand, within DZA65_RS01030 at 233.213 kb on + strand, within DZA65_RS01030 at 233.416 kb on - strand, within DZA65_RS01030 at 233.416 kb on - strand, within DZA65_RS01030 at 233.476 kb on + strand, within DZA65_RS01030 at 233.480 kb on + strand, within DZA65_RS01030 at 233.480 kb on + strand, within DZA65_RS01030 at 233.480 kb on + strand, within DZA65_RS01030 at 233.481 kb on - strand, within DZA65_RS01030 at 233.481 kb on - strand, within DZA65_RS01030 at 233.481 kb on - strand, within DZA65_RS01030 at 233.481 kb on - strand, within DZA65_RS01030 at 233.650 kb on + strand at 233.651 kb on - strand at 233.699 kb on - strand at 233.701 kb on + strand at 233.701 kb on + strand at 233.701 kb on + strand at 233.701 kb on + strand at 233.701 kb on + strand at 233.701 kb on + strand at 233.702 kb on - strand at 233.702 kb on - strand at 233.702 kb on - strand at 233.702 kb on - strand at 233.743 kb on - strand at 233.749 kb on + strand at 233.749 kb on + strand at 233.750 kb on - strand at 233.750 kb on - strand at 233.750 kb on - strand at 233.750 kb on - strand at 233.791 kb on + strand at 233.792 kb on - strand at 233.792 kb on - strand at 233.792 kb on - strand at 233.792 kb on - strand at 233.810 kb on + strand at 233.810 kb on + strand at 233.810 kb on + strand at 233.860 kb on + strand at 233.860 kb on + strand at 234.012 kb on - strand, within DZA65_RS01035 at 234.040 kb on - strand, within DZA65_RS01035 at 234.040 kb on - strand, within DZA65_RS01035 at 234.223 kb on + strand, within DZA65_RS01035 at 234.223 kb on + strand, within DZA65_RS01035 at 234.224 kb on - strand, within DZA65_RS01035 at 234.224 kb on - strand, within DZA65_RS01035 at 234.224 kb on - strand at 234.224 kb on - strand, within DZA65_RS01035 at 234.224 kb on - strand, within DZA65_RS01035 at 234.224 kb on - strand, within DZA65_RS01035 at 234.322 kb on + strand, within DZA65_RS01035 at 234.322 kb on + strand, within DZA65_RS01035 at 234.322 kb on + strand, within DZA65_RS01035 at 234.323 kb on - strand, within DZA65_RS01035 at 234.323 kb on - strand, within DZA65_RS01035 at 234.400 kb on + strand, within DZA65_RS01035 at 234.400 kb on + strand, within DZA65_RS01035 at 234.400 kb on + strand, within DZA65_RS01035 at 234.401 kb on - strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.467 kb on + strand, within DZA65_RS01035 at 234.468 kb on - strand, within DZA65_RS01035 at 234.468 kb on - strand, within DZA65_RS01035 at 234.468 kb on - strand, within DZA65_RS01035 at 234.468 kb on - strand, within DZA65_RS01035 at 234.468 kb on - strand at 234.468 kb on - strand, within DZA65_RS01035 at 234.468 kb on - strand, within DZA65_RS01035 at 234.519 kb on + strand, within DZA65_RS01035 at 234.519 kb on + strand, within DZA65_RS01035 at 234.519 kb on + strand, within DZA65_RS01035 at 234.520 kb on - strand, within DZA65_RS01035 at 234.520 kb on - strand, within DZA65_RS01035 at 234.520 kb on - strand, within DZA65_RS01035 at 234.520 kb on - strand, within DZA65_RS01035 at 234.531 kb on + strand, within DZA65_RS01035 at 234.557 kb on + strand, within DZA65_RS01035 at 234.558 kb on - strand, within DZA65_RS01035 at 234.571 kb on - strand, within DZA65_RS01035 at 234.622 kb on - strand, within DZA65_RS01035 at 234.622 kb on - strand, within DZA65_RS01035 at 234.622 kb on - strand, within DZA65_RS01035
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 231,478 + +0.6 231,478 + +0.3 231,478 + +0.8 231,479 - +0.0 231,479 - -0.4 231,479 - -0.4 231,479 - -1.1 231,479 - -0.1 231,487 + -0.1 231,487 + -0.7 231,487 + +0.4 231,487 + +0.6 231,487 + -1.6 231,487 + -1.6 231,487 + -1.6 231,488 - -1.6 231,488 - -0.3 231,488 - -0.8 231,488 - +0.6 231,488 - +0.2 231,488 - -0.0 231,488 - -0.0 231,488 - -1.0 231,488 - +0.2 231,499 + +0.6 231,499 + +0.2 231,499 + +0.1 231,500 - -0.3 231,500 - -0.1 231,500 - -0.0 231,549 + +0.8 231,550 - -0.4 231,550 - -0.6 231,588 + DZA65_RS01020 0.12 -0.6 231,589 - DZA65_RS01020 0.12 +0.9 231,624 - DZA65_RS01020 0.20 -0.1 231,776 + DZA65_RS01020 0.55 +0.9 232,002 + -0.1 232,002 + -0.8 232,002 + -0.9 232,002 + +0.4 232,003 - -0.1 232,003 - +0.2 232,003 - +0.2 232,091 - DZA65_RS01025 0.23 +0.3 232,219 - DZA65_RS01025 0.53 -0.4 232,234 + DZA65_RS01025 0.56 -0.8 232,323 - DZA65_RS01025 0.77 -0.4 232,323 - DZA65_RS01025 0.77 +0.2 232,379 + -0.1 232,379 + -0.1 232,379 + -0.5 232,379 + -0.6 232,379 + -0.9 232,379 + -0.0 232,380 - -0.1 232,380 - -0.4 232,380 - +0.4 232,380 - +0.5 232,380 - -0.6 232,380 - +0.2 232,393 + +0.2 232,474 + +0.4 232,475 - -0.8 232,476 + +0.4 232,477 - -0.3 232,517 + +0.2 232,518 - -0.4 232,518 - -0.6 232,523 + -0.8 232,523 + -1.0 232,523 + +0.3 232,523 + +2.2 232,523 + -0.8 232,523 + -1.6 232,523 + -0.8 232,523 + -1.4 232,523 + +1.2 232,523 + -1.5 232,523 + +0.8 232,524 - +0.9 232,524 - +0.2 232,524 - +0.9 232,524 - -0.1 232,524 - -0.4 232,524 - -2.5 232,524 - -0.6 232,565 + -0.4 232,646 + DZA65_RS01030 0.15 +0.9 232,740 + DZA65_RS01030 0.23 +0.5 232,740 + DZA65_RS01030 0.23 -1.1 232,761 + DZA65_RS01030 0.25 -0.9 232,762 - DZA65_RS01030 0.25 -0.4 232,762 - DZA65_RS01030 0.25 -1.1 232,762 - DZA65_RS01030 0.25 +1.2 232,991 + DZA65_RS01030 0.45 -0.7 233,021 - DZA65_RS01030 0.47 -0.1 233,069 + DZA65_RS01030 0.51 -1.5 233,213 + DZA65_RS01030 0.64 +0.8 233,416 - DZA65_RS01030 0.81 -0.8 233,416 - DZA65_RS01030 0.81 -0.8 233,476 + DZA65_RS01030 0.86 +0.2 233,480 + DZA65_RS01030 0.87 +0.2 233,480 + DZA65_RS01030 0.87 +0.2 233,480 + DZA65_RS01030 0.87 +1.2 233,481 - DZA65_RS01030 0.87 +1.2 233,481 - DZA65_RS01030 0.87 -1.4 233,481 - DZA65_RS01030 0.87 -0.1 233,481 - DZA65_RS01030 0.87 -0.8 233,650 + +0.4 233,651 - -0.4 233,699 - -1.1 233,701 + -0.8 233,701 + -0.4 233,701 + -0.6 233,701 + -0.4 233,701 + -0.6 233,701 + -0.5 233,702 - -0.4 233,702 - -0.7 233,702 - +0.2 233,702 - -0.4 233,743 - +2.2 233,749 + +0.6 233,749 + +0.6 233,750 - +1.2 233,750 - -0.2 233,750 - -2.1 233,750 - +2.0 233,791 + +0.8 233,792 - -0.4 233,792 - +0.2 233,792 - -0.3 233,792 - +0.5 233,810 + -1.6 233,810 + -0.3 233,810 + -0.1 233,860 + +0.9 233,860 + -1.1 234,012 - DZA65_RS01035 0.17 -0.1 234,040 - DZA65_RS01035 0.18 -0.0 234,040 - DZA65_RS01035 0.18 +0.2 234,223 + DZA65_RS01035 0.26 -0.3 234,223 + DZA65_RS01035 0.26 +0.2 234,224 - DZA65_RS01035 0.26 -0.1 234,224 - DZA65_RS01035 0.26 +0.9 234,224 - +1.2 234,224 - DZA65_RS01035 0.26 -0.2 234,224 - DZA65_RS01035 0.26 +0.2 234,224 - DZA65_RS01035 0.26 -1.3 234,322 + DZA65_RS01035 0.31 -0.4 234,322 + DZA65_RS01035 0.31 +0.7 234,322 + DZA65_RS01035 0.31 -0.1 234,323 - DZA65_RS01035 0.31 -1.4 234,323 - DZA65_RS01035 0.31 +0.4 234,400 + DZA65_RS01035 0.34 +0.8 234,400 + DZA65_RS01035 0.34 +0.7 234,400 + DZA65_RS01035 0.34 -1.6 234,401 - DZA65_RS01035 0.34 -0.6 234,467 + DZA65_RS01035 0.37 -1.1 234,467 + DZA65_RS01035 0.37 +0.2 234,467 + DZA65_RS01035 0.37 +1.2 234,467 + DZA65_RS01035 0.37 -1.8 234,467 + DZA65_RS01035 0.37 -0.8 234,467 + DZA65_RS01035 0.37 +0.0 234,467 + DZA65_RS01035 0.37 -0.4 234,467 + DZA65_RS01035 0.37 -1.5 234,467 + DZA65_RS01035 0.37 -1.3 234,467 + DZA65_RS01035 0.37 -0.4 234,468 - DZA65_RS01035 0.37 +0.5 234,468 - DZA65_RS01035 0.37 -0.1 234,468 - DZA65_RS01035 0.37 -1.8 234,468 - DZA65_RS01035 0.37 -0.3 234,468 - +0.6 234,468 - DZA65_RS01035 0.37 -1.8 234,468 - DZA65_RS01035 0.37 -0.5 234,519 + DZA65_RS01035 0.40 -0.8 234,519 + DZA65_RS01035 0.40 -0.7 234,519 + DZA65_RS01035 0.40 -2.4 234,520 - DZA65_RS01035 0.40 -0.3 234,520 - DZA65_RS01035 0.40 -1.4 234,520 - DZA65_RS01035 0.40 +0.8 234,520 - DZA65_RS01035 0.40 +1.2 234,531 + DZA65_RS01035 0.40 +0.4 234,557 + DZA65_RS01035 0.41 +0.7 234,558 - DZA65_RS01035 0.42 -0.1 234,571 - DZA65_RS01035 0.42 -0.8 234,622 - DZA65_RS01035 0.44 +3.5 234,622 - DZA65_RS01035 0.44 -0.1 234,622 - DZA65_RS01035 0.44 +1.2
Or see this region's nucleotide sequence