Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS09480 and DZA65_RS22850 are separated by 67 nucleotides DZA65_RS22850 and DZA65_RS09485 are separated by 0 nucleotides DZA65_RS09485 and DZA65_RS09490 are separated by 157 nucleotides
DZA65_RS09480: DZA65_RS09480 - OFA family MFS transporter, at 1,993,280 to 1,994,497
_RS09480
DZA65_RS22850: DZA65_RS22850 - hypothetical protein, at 1,994,565 to 1,994,714
_RS22850
DZA65_RS09485: DZA65_RS09485 - 50S ribosomal protein L25, at 1,994,715 to 1,995,002
_RS09485
DZA65_RS09490: DZA65_RS09490 - DEAD/DEAH box helicase, at 1,995,160 to 1,996,965
_RS09490
Position (kb)
1994
1995 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1993.625 kb on + strand, within DZA65_RS09480 at 1993.626 kb on - strand, within DZA65_RS09480 at 1993.626 kb on - strand, within DZA65_RS09480 at 1993.651 kb on + strand, within DZA65_RS09480 at 1993.651 kb on + strand, within DZA65_RS09480 at 1993.651 kb on + strand, within DZA65_RS09480 at 1993.652 kb on - strand, within DZA65_RS09480 at 1993.652 kb on - strand, within DZA65_RS09480 at 1993.652 kb on - strand, within DZA65_RS09480 at 1993.730 kb on + strand, within DZA65_RS09480 at 1993.730 kb on + strand, within DZA65_RS09480 at 1993.730 kb on + strand, within DZA65_RS09480 at 1993.730 kb on + strand, within DZA65_RS09480 at 1993.731 kb on - strand, within DZA65_RS09480 at 1993.889 kb on - strand, within DZA65_RS09480 at 1993.967 kb on + strand, within DZA65_RS09480 at 1993.967 kb on + strand, within DZA65_RS09480 at 1993.967 kb on + strand, within DZA65_RS09480 at 1993.968 kb on - strand, within DZA65_RS09480 at 1993.968 kb on - strand, within DZA65_RS09480 at 1993.968 kb on - strand, within DZA65_RS09480 at 1994.088 kb on - strand, within DZA65_RS09480 at 1994.088 kb on - strand, within DZA65_RS09480 at 1994.104 kb on - strand, within DZA65_RS09480 at 1994.203 kb on + strand, within DZA65_RS09480 at 1994.233 kb on + strand, within DZA65_RS09480 at 1994.236 kb on + strand, within DZA65_RS09480 at 1994.236 kb on + strand, within DZA65_RS09480 at 1994.236 kb on + strand, within DZA65_RS09480 at 1994.237 kb on - strand, within DZA65_RS09480 at 1994.237 kb on - strand, within DZA65_RS09480 at 1994.237 kb on - strand, within DZA65_RS09480 at 1994.237 kb on - strand, within DZA65_RS09480 at 1994.246 kb on + strand, within DZA65_RS09480 at 1994.348 kb on - strand, within DZA65_RS09480 at 1994.383 kb on + strand at 1994.383 kb on + strand at 1994.383 kb on + strand at 1994.383 kb on + strand at 1994.519 kb on - strand at 1994.529 kb on + strand at 1994.529 kb on + strand at 1994.529 kb on + strand at 1994.530 kb on - strand at 1994.531 kb on + strand at 1994.532 kb on - strand at 1994.532 kb on - strand at 1994.532 kb on - strand at 1994.598 kb on + strand, within DZA65_RS22850 at 1995.146 kb on - strand at 1995.146 kb on - strand at 1995.146 kb on - strand at 1995.363 kb on + strand, within DZA65_RS09490 at 1995.364 kb on - strand, within DZA65_RS09490 at 1995.432 kb on - strand, within DZA65_RS09490 at 1995.432 kb on - strand, within DZA65_RS09490 at 1995.432 kb on - strand, within DZA65_RS09490 at 1995.432 kb on - strand, within DZA65_RS09490 at 1995.435 kb on - strand, within DZA65_RS09490 at 1995.435 kb on - strand, within DZA65_RS09490 at 1995.435 kb on - strand, within DZA65_RS09490 at 1995.435 kb on - strand, within DZA65_RS09490 at 1995.435 kb on - strand, within DZA65_RS09490 at 1995.503 kb on - strand, within DZA65_RS09490 at 1995.540 kb on + strand, within DZA65_RS09490
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,993,625 + DZA65_RS09480 0.28 -1.5 1,993,626 - DZA65_RS09480 0.28 +1.4 1,993,626 - DZA65_RS09480 0.28 -0.3 1,993,651 + DZA65_RS09480 0.30 -2.2 1,993,651 + DZA65_RS09480 0.30 -0.1 1,993,651 + DZA65_RS09480 0.30 -2.2 1,993,652 - DZA65_RS09480 0.31 -0.5 1,993,652 - DZA65_RS09480 0.31 -0.2 1,993,652 - DZA65_RS09480 0.31 -1.0 1,993,730 + DZA65_RS09480 0.37 -1.2 1,993,730 + DZA65_RS09480 0.37 +1.2 1,993,730 + DZA65_RS09480 0.37 +0.1 1,993,730 + DZA65_RS09480 0.37 +0.8 1,993,731 - DZA65_RS09480 0.37 -0.7 1,993,889 - DZA65_RS09480 0.50 -0.2 1,993,967 + DZA65_RS09480 0.56 -0.3 1,993,967 + DZA65_RS09480 0.56 -0.0 1,993,967 + DZA65_RS09480 0.56 -1.1 1,993,968 - DZA65_RS09480 0.56 -1.2 1,993,968 - DZA65_RS09480 0.56 -1.7 1,993,968 - DZA65_RS09480 0.56 -2.4 1,994,088 - DZA65_RS09480 0.66 -1.5 1,994,088 - DZA65_RS09480 0.66 -1.6 1,994,104 - DZA65_RS09480 0.68 +0.8 1,994,203 + DZA65_RS09480 0.76 +0.1 1,994,233 + DZA65_RS09480 0.78 -1.2 1,994,236 + DZA65_RS09480 0.78 -0.5 1,994,236 + DZA65_RS09480 0.78 -0.3 1,994,236 + DZA65_RS09480 0.78 +0.2 1,994,237 - DZA65_RS09480 0.79 -1.0 1,994,237 - DZA65_RS09480 0.79 -0.7 1,994,237 - DZA65_RS09480 0.79 -0.7 1,994,237 - DZA65_RS09480 0.79 -0.2 1,994,246 + DZA65_RS09480 0.79 -1.2 1,994,348 - DZA65_RS09480 0.88 +0.2 1,994,383 + -0.7 1,994,383 + -0.5 1,994,383 + -0.2 1,994,383 + -1.7 1,994,519 - +0.3 1,994,529 + -0.3 1,994,529 + -2.9 1,994,529 + -0.2 1,994,530 - +0.8 1,994,531 + -0.5 1,994,532 - -0.9 1,994,532 - -1.0 1,994,532 - +2.2 1,994,598 + DZA65_RS22850 0.22 -0.7 1,995,146 - -0.3 1,995,146 - -0.8 1,995,146 - -1.5 1,995,363 + DZA65_RS09490 0.11 +0.8 1,995,364 - DZA65_RS09490 0.11 +2.2 1,995,432 - DZA65_RS09490 0.15 -0.4 1,995,432 - DZA65_RS09490 0.15 +0.3 1,995,432 - DZA65_RS09490 0.15 +0.1 1,995,432 - DZA65_RS09490 0.15 -0.4 1,995,435 - DZA65_RS09490 0.15 -0.7 1,995,435 - DZA65_RS09490 0.15 +0.4 1,995,435 - DZA65_RS09490 0.15 -1.5 1,995,435 - DZA65_RS09490 0.15 +0.5 1,995,435 - DZA65_RS09490 0.15 -0.3 1,995,503 - DZA65_RS09490 0.19 -2.3 1,995,540 + DZA65_RS09490 0.21 +0.5
Or see this region's nucleotide sequence