Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22385

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS22375 and DZA65_RS22380 are separated by 48 nucleotidesDZA65_RS22380 and DZA65_RS22385 are separated by 65 nucleotidesDZA65_RS22385 and DZA65_RS22390 are separated by 14 nucleotidesDZA65_RS22390 and DZA65_RS22395 are separated by 12 nucleotides DZA65_RS22375: DZA65_RS22375 - F0F1 ATP synthase subunit A, at 4,840,629 to 4,841,420 _RS22375 DZA65_RS22380: DZA65_RS22380 - F0F1 ATP synthase subunit C, at 4,841,469 to 4,841,708 _RS22380 DZA65_RS22385: DZA65_RS22385 - F0F1 ATP synthase subunit B, at 4,841,774 to 4,842,244 _RS22385 DZA65_RS22390: DZA65_RS22390 - F0F1 ATP synthase subunit delta, at 4,842,259 to 4,842,792 _RS22390 DZA65_RS22395: DZA65_RS22395 - F0F1 ATP synthase subunit alpha, at 4,842,805 to 4,844,346 _RS22395 Position (kb) 4841 4842 4843Strain fitness (log2 ratio) -2 -1 0 1 2at 4841.434 kb on + strandat 4841.434 kb on + strandat 4841.434 kb on + strandat 4841.444 kb on + strandat 4841.710 kb on + strandat 4841.710 kb on + strandat 4841.710 kb on + strandat 4841.710 kb on + strandat 4841.710 kb on + strandat 4841.729 kb on + strandat 4841.729 kb on + strandat 4841.729 kb on + strandat 4841.729 kb on + strandat 4842.242 kb on + strandat 4843.068 kb on - strand, within DZA65_RS22395

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,841,434 + +0.3
4,841,434 + +0.3
4,841,434 + +2.0
4,841,444 + +0.5
4,841,710 + -2.1
4,841,710 + -2.4
4,841,710 + +0.3
4,841,710 + +1.1
4,841,710 + -0.6
4,841,729 + -0.3
4,841,729 + -1.3
4,841,729 + -0.3
4,841,729 + -2.3
4,842,242 + -1.7
4,843,068 - DZA65_RS22395 0.17 +1.3

Or see this region's nucleotide sequence