Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS22375 and DZA65_RS22380 are separated by 48 nucleotides DZA65_RS22380 and DZA65_RS22385 are separated by 65 nucleotides DZA65_RS22385 and DZA65_RS22390 are separated by 14 nucleotides DZA65_RS22390 and DZA65_RS22395 are separated by 12 nucleotides
DZA65_RS22375: DZA65_RS22375 - F0F1 ATP synthase subunit A, at 4,840,629 to 4,841,420
_RS22375
DZA65_RS22380: DZA65_RS22380 - F0F1 ATP synthase subunit C, at 4,841,469 to 4,841,708
_RS22380
DZA65_RS22385: DZA65_RS22385 - F0F1 ATP synthase subunit B, at 4,841,774 to 4,842,244
_RS22385
DZA65_RS22390: DZA65_RS22390 - F0F1 ATP synthase subunit delta, at 4,842,259 to 4,842,792
_RS22390
DZA65_RS22395: DZA65_RS22395 - F0F1 ATP synthase subunit alpha, at 4,842,805 to 4,844,346
_RS22395
Position (kb)
4841
4842
4843 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4841.434 kb on + strand at 4841.434 kb on + strand at 4841.434 kb on + strand at 4841.444 kb on + strand at 4841.710 kb on + strand at 4841.710 kb on + strand at 4841.710 kb on + strand at 4841.710 kb on + strand at 4841.710 kb on + strand at 4841.729 kb on + strand at 4841.729 kb on + strand at 4841.729 kb on + strand at 4841.729 kb on + strand at 4842.242 kb on + strand at 4843.068 kb on - strand, within DZA65_RS22395
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,841,434 + +0.3 4,841,434 + +0.3 4,841,434 + +2.0 4,841,444 + +0.5 4,841,710 + -2.1 4,841,710 + -2.4 4,841,710 + +0.3 4,841,710 + +1.1 4,841,710 + -0.6 4,841,729 + -0.3 4,841,729 + -1.3 4,841,729 + -0.3 4,841,729 + -2.3 4,842,242 + -1.7 4,843,068 - DZA65_RS22395 0.17 +1.3
Or see this region's nucleotide sequence