Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS21435 and DZA65_RS21440 are separated by 14 nucleotides DZA65_RS21440 and DZA65_RS21445 are separated by 207 nucleotides DZA65_RS21445 and DZA65_RS21450 are separated by 134 nucleotides
DZA65_RS21435: DZA65_RS21435 - YijD family membrane protein, at 4,635,898 to 4,636,272
_RS21435
DZA65_RS21440: DZA65_RS21440 - HTH-type transcriptional repressor FabR, at 4,636,287 to 4,636,925
_RS21440
DZA65_RS21445: DZA65_RS21445 - Si-specific NAD(P)(+) transhydrogenase, at 4,637,133 to 4,638,533
_RS21445
DZA65_RS21450: DZA65_RS21450 - DNA-binding transcriptional regulator OxyR, at 4,638,668 to 4,639,585
_RS21450
Position (kb) 4637
4638
4639 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4636.176 kb on + strand, within DZA65_RS21435 at 4636.176 kb on + strand, within DZA65_RS21435 at 4636.258 kb on + strand at 4636.259 kb on - strand at 4636.259 kb on - strand at 4636.288 kb on + strand at 4636.336 kb on + strand at 4636.336 kb on + strand at 4636.337 kb on - strand at 4636.340 kb on - strand at 4636.340 kb on - strand at 4636.340 kb on - strand at 4636.340 kb on - strand at 4636.340 kb on - strand at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.404 kb on + strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.405 kb on - strand, within DZA65_RS21440 at 4636.407 kb on - strand, within DZA65_RS21440 at 4636.407 kb on - strand, within DZA65_RS21440 at 4636.440 kb on + strand, within DZA65_RS21440 at 4636.440 kb on + strand, within DZA65_RS21440 at 4636.440 kb on + strand, within DZA65_RS21440 at 4636.440 kb on + strand, within DZA65_RS21440 at 4636.441 kb on - strand, within DZA65_RS21440 at 4636.490 kb on + strand, within DZA65_RS21440 at 4636.491 kb on - strand, within DZA65_RS21440 at 4636.510 kb on + strand, within DZA65_RS21440 at 4636.510 kb on + strand, within DZA65_RS21440 at 4636.510 kb on + strand, within DZA65_RS21440 at 4636.511 kb on - strand, within DZA65_RS21440 at 4636.511 kb on - strand, within DZA65_RS21440 at 4636.511 kb on - strand, within DZA65_RS21440 at 4636.686 kb on - strand, within DZA65_RS21440 at 4636.686 kb on - strand, within DZA65_RS21440 at 4636.780 kb on + strand, within DZA65_RS21440 at 4636.781 kb on - strand, within DZA65_RS21440 at 4636.844 kb on + strand, within DZA65_RS21440 at 4636.845 kb on - strand, within DZA65_RS21440 at 4636.845 kb on - strand, within DZA65_RS21440 at 4636.845 kb on - strand, within DZA65_RS21440 at 4636.845 kb on - strand, within DZA65_RS21440 at 4636.857 kb on + strand, within DZA65_RS21440 at 4636.926 kb on + strand at 4636.927 kb on - strand at 4636.954 kb on + strand at 4636.954 kb on + strand at 4636.954 kb on + strand at 4636.954 kb on + strand at 4636.954 kb on + strand at 4636.955 kb on - strand at 4636.955 kb on - strand at 4636.955 kb on - strand at 4636.955 kb on - strand at 4636.955 kb on - strand at 4636.955 kb on - strand at 4636.955 kb on - strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.972 kb on + strand at 4636.973 kb on - strand at 4636.973 kb on - strand at 4636.973 kb on - strand at 4636.973 kb on - strand at 4636.973 kb on - strand at 4636.973 kb on - strand at 4636.973 kb on - strand at 4636.973 kb on - strand at 4636.974 kb on + strand at 4636.974 kb on + strand at 4636.974 kb on + strand at 4636.974 kb on + strand at 4636.975 kb on - strand at 4636.975 kb on - strand at 4636.984 kb on + strand at 4636.984 kb on + strand at 4636.984 kb on + strand at 4636.984 kb on + strand at 4636.985 kb on - strand at 4636.985 kb on - strand at 4636.985 kb on - strand at 4636.995 kb on + strand at 4636.995 kb on + strand at 4636.995 kb on + strand at 4636.996 kb on - strand at 4636.996 kb on - strand at 4637.015 kb on + strand at 4637.015 kb on + strand at 4637.015 kb on + strand at 4637.016 kb on - strand at 4637.016 kb on - strand at 4637.018 kb on + strand at 4637.018 kb on + strand at 4637.018 kb on + strand at 4637.018 kb on + strand at 4637.084 kb on - strand at 4637.123 kb on + strand at 4637.134 kb on + strand at 4637.145 kb on + strand at 4637.145 kb on + strand at 4637.233 kb on + strand at 4637.244 kb on + strand at 4637.247 kb on + strand at 4637.248 kb on - strand at 4637.346 kb on + strand, within DZA65_RS21445 at 4637.347 kb on - strand, within DZA65_RS21445 at 4637.347 kb on - strand, within DZA65_RS21445 at 4637.347 kb on - strand, within DZA65_RS21445 at 4637.501 kb on + strand, within DZA65_RS21445 at 4637.583 kb on + strand, within DZA65_RS21445 at 4637.584 kb on - strand, within DZA65_RS21445 at 4637.622 kb on + strand, within DZA65_RS21445 at 4637.677 kb on - strand, within DZA65_RS21445 at 4637.805 kb on + strand, within DZA65_RS21445 at 4638.100 kb on - strand, within DZA65_RS21445 at 4638.168 kb on - strand, within DZA65_RS21445 at 4638.183 kb on + strand, within DZA65_RS21445 at 4638.183 kb on + strand, within DZA65_RS21445 at 4638.184 kb on - strand, within DZA65_RS21445 at 4638.184 kb on - strand, within DZA65_RS21445 at 4638.188 kb on + strand, within DZA65_RS21445 at 4638.438 kb on - strand at 4638.440 kb on + strand at 4638.440 kb on + strand at 4638.441 kb on - strand at 4638.441 kb on - strand at 4638.441 kb on - strand at 4638.567 kb on - strand at 4638.588 kb on + strand at 4638.588 kb on + strand at 4638.644 kb on + strand at 4638.648 kb on + strand at 4638.652 kb on + strand at 4638.669 kb on + strand at 4638.771 kb on + strand, within DZA65_RS21450 at 4638.772 kb on - strand, within DZA65_RS21450 at 4638.772 kb on - strand, within DZA65_RS21450 at 4638.787 kb on + strand, within DZA65_RS21450 at 4638.787 kb on + strand, within DZA65_RS21450 at 4638.787 kb on + strand, within DZA65_RS21450 at 4638.788 kb on - strand, within DZA65_RS21450 at 4638.788 kb on - strand, within DZA65_RS21450 at 4638.788 kb on - strand, within DZA65_RS21450 at 4638.807 kb on + strand, within DZA65_RS21450 at 4638.807 kb on + strand, within DZA65_RS21450 at 4638.807 kb on + strand, within DZA65_RS21450 at 4638.808 kb on - strand, within DZA65_RS21450 at 4638.808 kb on - strand, within DZA65_RS21450 at 4638.819 kb on + strand, within DZA65_RS21450 at 4638.819 kb on + strand, within DZA65_RS21450 at 4638.819 kb on + strand, within DZA65_RS21450 at 4638.820 kb on - strand, within DZA65_RS21450 at 4638.820 kb on - strand, within DZA65_RS21450 at 4638.820 kb on - strand, within DZA65_RS21450 at 4638.820 kb on - strand, within DZA65_RS21450 at 4638.874 kb on + strand, within DZA65_RS21450 at 4638.874 kb on + strand, within DZA65_RS21450 at 4638.877 kb on + strand, within DZA65_RS21450 at 4638.877 kb on + strand, within DZA65_RS21450 at 4638.877 kb on + strand, within DZA65_RS21450 at 4638.878 kb on - strand, within DZA65_RS21450 at 4638.878 kb on - strand, within DZA65_RS21450 at 4638.893 kb on + strand, within DZA65_RS21450 at 4639.077 kb on + strand, within DZA65_RS21450 at 4639.077 kb on + strand, within DZA65_RS21450 at 4639.077 kb on + strand, within DZA65_RS21450 at 4639.077 kb on + strand, within DZA65_RS21450 at 4639.077 kb on + strand, within DZA65_RS21450 at 4639.078 kb on - strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.218 kb on + strand, within DZA65_RS21450 at 4639.219 kb on - strand, within DZA65_RS21450 at 4639.219 kb on - strand, within DZA65_RS21450 at 4639.219 kb on - strand, within DZA65_RS21450 at 4639.219 kb on - strand, within DZA65_RS21450 at 4639.240 kb on + strand, within DZA65_RS21450 at 4639.240 kb on + strand, within DZA65_RS21450 at 4639.240 kb on + strand, within DZA65_RS21450 at 4639.240 kb on + strand, within DZA65_RS21450 at 4639.241 kb on - strand, within DZA65_RS21450 at 4639.241 kb on - strand, within DZA65_RS21450 at 4639.275 kb on + strand, within DZA65_RS21450 at 4639.276 kb on - strand, within DZA65_RS21450 at 4639.276 kb on - strand, within DZA65_RS21450 at 4639.304 kb on - strand, within DZA65_RS21450
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,636,176 + DZA65_RS21435 0.74 -0.2 4,636,176 + DZA65_RS21435 0.74 -1.1 4,636,258 + +0.0 4,636,259 - -0.3 4,636,259 - -2.3 4,636,288 + -0.8 4,636,336 + +0.7 4,636,336 + -0.6 4,636,337 - +0.5 4,636,340 - +0.7 4,636,340 - +0.2 4,636,340 - +0.1 4,636,340 - +0.6 4,636,340 - +0.5 4,636,404 + DZA65_RS21440 0.18 +0.5 4,636,404 + DZA65_RS21440 0.18 +0.2 4,636,404 + DZA65_RS21440 0.18 +0.4 4,636,404 + DZA65_RS21440 0.18 +0.1 4,636,404 + DZA65_RS21440 0.18 +0.6 4,636,404 + DZA65_RS21440 0.18 -1.8 4,636,404 + DZA65_RS21440 0.18 +0.4 4,636,404 + DZA65_RS21440 0.18 +0.2 4,636,404 + DZA65_RS21440 0.18 +0.7 4,636,404 + DZA65_RS21440 0.18 +0.7 4,636,404 + DZA65_RS21440 0.18 +0.7 4,636,404 + DZA65_RS21440 0.18 +1.8 4,636,404 + DZA65_RS21440 0.18 +0.6 4,636,404 + DZA65_RS21440 0.18 +0.4 4,636,404 + DZA65_RS21440 0.18 +0.5 4,636,404 + DZA65_RS21440 0.18 +0.2 4,636,405 - DZA65_RS21440 0.18 +0.8 4,636,405 - DZA65_RS21440 0.18 +0.2 4,636,405 - DZA65_RS21440 0.18 +0.3 4,636,405 - DZA65_RS21440 0.18 +0.6 4,636,405 - DZA65_RS21440 0.18 +0.5 4,636,405 - DZA65_RS21440 0.18 +0.5 4,636,405 - DZA65_RS21440 0.18 +0.4 4,636,405 - DZA65_RS21440 0.18 +0.2 4,636,405 - DZA65_RS21440 0.18 +0.7 4,636,405 - DZA65_RS21440 0.18 +1.1 4,636,405 - DZA65_RS21440 0.18 +0.7 4,636,405 - +1.6 4,636,405 - DZA65_RS21440 0.18 +0.7 4,636,405 - DZA65_RS21440 0.18 +0.9 4,636,405 - DZA65_RS21440 0.18 +0.7 4,636,405 - DZA65_RS21440 0.18 +0.1 4,636,405 - DZA65_RS21440 0.18 +0.1 4,636,405 - DZA65_RS21440 0.18 +0.5 4,636,405 - DZA65_RS21440 0.18 +0.4 4,636,407 - DZA65_RS21440 0.19 +0.4 4,636,407 - DZA65_RS21440 0.19 -0.2 4,636,440 + DZA65_RS21440 0.24 +0.1 4,636,440 + DZA65_RS21440 0.24 -0.3 4,636,440 + DZA65_RS21440 0.24 +0.7 4,636,440 + DZA65_RS21440 0.24 +0.0 4,636,441 - DZA65_RS21440 0.24 +0.6 4,636,490 + DZA65_RS21440 0.32 +0.6 4,636,491 - DZA65_RS21440 0.32 +0.2 4,636,510 + DZA65_RS21440 0.35 +0.2 4,636,510 + DZA65_RS21440 0.35 +1.1 4,636,510 + DZA65_RS21440 0.35 +0.7 4,636,511 - DZA65_RS21440 0.35 -0.6 4,636,511 - DZA65_RS21440 0.35 +1.0 4,636,511 - DZA65_RS21440 0.35 +0.4 4,636,686 - DZA65_RS21440 0.62 -0.1 4,636,686 - DZA65_RS21440 0.62 +0.3 4,636,780 + DZA65_RS21440 0.77 +1.0 4,636,781 - DZA65_RS21440 0.77 +0.5 4,636,844 + DZA65_RS21440 0.87 -0.3 4,636,845 - DZA65_RS21440 0.87 +0.2 4,636,845 - DZA65_RS21440 0.87 -0.5 4,636,845 - DZA65_RS21440 0.87 +1.3 4,636,845 - DZA65_RS21440 0.87 +0.0 4,636,857 + DZA65_RS21440 0.89 +0.6 4,636,926 + +0.9 4,636,927 - +0.8 4,636,954 + +0.5 4,636,954 + +0.2 4,636,954 + -0.1 4,636,954 + +0.5 4,636,954 + -0.0 4,636,955 - +0.8 4,636,955 - -1.2 4,636,955 - -1.0 4,636,955 - +0.3 4,636,955 - +0.2 4,636,955 - -1.1 4,636,955 - -0.4 4,636,972 + +0.9 4,636,972 + +0.8 4,636,972 + +0.3 4,636,972 + +0.4 4,636,972 + +1.0 4,636,972 + +0.4 4,636,972 + -0.7 4,636,972 + +1.3 4,636,972 + +1.1 4,636,972 + +0.7 4,636,972 + +0.4 4,636,972 + +0.4 4,636,972 + +0.2 4,636,972 + +0.1 4,636,972 + +1.1 4,636,972 + +0.1 4,636,972 + +0.1 4,636,972 + +0.4 4,636,972 + -0.0 4,636,972 + +0.3 4,636,972 + +0.0 4,636,972 + +0.8 4,636,972 + +0.0 4,636,972 + -0.0 4,636,972 + -0.6 4,636,972 + -0.2 4,636,973 - -1.0 4,636,973 - -1.2 4,636,973 - -0.3 4,636,973 - +0.0 4,636,973 - -0.6 4,636,973 - -0.5 4,636,973 - -1.1 4,636,973 - -0.8 4,636,974 + -0.9 4,636,974 + +0.4 4,636,974 + +0.2 4,636,974 + -0.2 4,636,975 - -0.5 4,636,975 - -1.1 4,636,984 + +0.6 4,636,984 + -0.2 4,636,984 + -0.1 4,636,984 + -0.1 4,636,985 - +1.2 4,636,985 - +0.2 4,636,985 - -0.3 4,636,995 + +1.2 4,636,995 + -0.8 4,636,995 + -0.1 4,636,996 - -1.1 4,636,996 - -0.2 4,637,015 + +0.2 4,637,015 + -0.9 4,637,015 + -0.3 4,637,016 - -1.3 4,637,016 - +0.1 4,637,018 + +0.1 4,637,018 + -1.1 4,637,018 + -1.2 4,637,018 + -0.2 4,637,084 - -0.3 4,637,123 + -0.1 4,637,134 + -0.8 4,637,145 + -2.2 4,637,145 + -1.6 4,637,233 + -1.1 4,637,244 + +0.2 4,637,247 + -0.8 4,637,248 - -0.8 4,637,346 + DZA65_RS21445 0.15 -0.8 4,637,347 - DZA65_RS21445 0.15 +0.2 4,637,347 - DZA65_RS21445 0.15 -0.3 4,637,347 - DZA65_RS21445 0.15 +1.2 4,637,501 + DZA65_RS21445 0.26 -1.8 4,637,583 + DZA65_RS21445 0.32 -1.3 4,637,584 - DZA65_RS21445 0.32 +0.2 4,637,622 + DZA65_RS21445 0.35 -0.8 4,637,677 - DZA65_RS21445 0.39 -0.1 4,637,805 + DZA65_RS21445 0.48 -1.8 4,638,100 - DZA65_RS21445 0.69 -2.1 4,638,168 - DZA65_RS21445 0.74 +0.4 4,638,183 + DZA65_RS21445 0.75 +0.2 4,638,183 + DZA65_RS21445 0.75 +1.6 4,638,184 - DZA65_RS21445 0.75 -1.3 4,638,184 - DZA65_RS21445 0.75 -1.1 4,638,188 + DZA65_RS21445 0.75 -0.8 4,638,438 - -0.8 4,638,440 + -2.1 4,638,440 + -0.8 4,638,441 - -2.1 4,638,441 - +0.2 4,638,441 - -1.6 4,638,567 - +0.6 4,638,588 + -0.1 4,638,588 + -0.1 4,638,644 + +0.1 4,638,648 + +0.7 4,638,652 + -0.8 4,638,669 + +1.2 4,638,771 + DZA65_RS21450 0.11 -1.6 4,638,772 - DZA65_RS21450 0.11 -0.2 4,638,772 - DZA65_RS21450 0.11 -0.5 4,638,787 + DZA65_RS21450 0.13 -0.9 4,638,787 + DZA65_RS21450 0.13 +1.4 4,638,787 + DZA65_RS21450 0.13 +0.2 4,638,788 - DZA65_RS21450 0.13 -0.7 4,638,788 - DZA65_RS21450 0.13 +1.0 4,638,788 - DZA65_RS21450 0.13 -1.5 4,638,807 + DZA65_RS21450 0.15 +0.5 4,638,807 + DZA65_RS21450 0.15 +0.1 4,638,807 + DZA65_RS21450 0.15 -0.1 4,638,808 - DZA65_RS21450 0.15 +2.2 4,638,808 - DZA65_RS21450 0.15 -1.0 4,638,819 + DZA65_RS21450 0.16 -0.8 4,638,819 + DZA65_RS21450 0.16 -0.4 4,638,819 + DZA65_RS21450 0.16 -0.6 4,638,820 - DZA65_RS21450 0.17 +0.8 4,638,820 - DZA65_RS21450 0.17 -0.1 4,638,820 - DZA65_RS21450 0.17 -0.1 4,638,820 - DZA65_RS21450 0.17 -0.1 4,638,874 + DZA65_RS21450 0.22 -0.5 4,638,874 + DZA65_RS21450 0.22 -0.4 4,638,877 + DZA65_RS21450 0.23 -0.3 4,638,877 + DZA65_RS21450 0.23 -0.4 4,638,877 + DZA65_RS21450 0.23 +0.0 4,638,878 - DZA65_RS21450 0.23 +0.0 4,638,878 - DZA65_RS21450 0.23 -1.3 4,638,893 + DZA65_RS21450 0.25 -0.4 4,639,077 + DZA65_RS21450 0.45 +0.3 4,639,077 + DZA65_RS21450 0.45 -1.8 4,639,077 + DZA65_RS21450 0.45 +0.1 4,639,077 + DZA65_RS21450 0.45 +0.2 4,639,077 + DZA65_RS21450 0.45 -1.0 4,639,078 - DZA65_RS21450 0.45 -0.8 4,639,218 + DZA65_RS21450 0.60 +0.2 4,639,218 + DZA65_RS21450 0.60 -0.7 4,639,218 + DZA65_RS21450 0.60 +0.2 4,639,218 + DZA65_RS21450 0.60 +0.0 4,639,218 + DZA65_RS21450 0.60 -0.8 4,639,218 + DZA65_RS21450 0.60 +0.5 4,639,218 + DZA65_RS21450 0.60 -0.1 4,639,218 + DZA65_RS21450 0.60 +0.1 4,639,219 - DZA65_RS21450 0.60 -1.3 4,639,219 - DZA65_RS21450 0.60 +0.2 4,639,219 - DZA65_RS21450 0.60 +1.7 4,639,219 - DZA65_RS21450 0.60 +1.0 4,639,240 + DZA65_RS21450 0.62 -0.9 4,639,240 + DZA65_RS21450 0.62 +0.1 4,639,240 + DZA65_RS21450 0.62 +0.7 4,639,240 + DZA65_RS21450 0.62 +0.0 4,639,241 - DZA65_RS21450 0.62 +1.1 4,639,241 - DZA65_RS21450 0.62 -0.6 4,639,275 + DZA65_RS21450 0.66 +0.1 4,639,276 - DZA65_RS21450 0.66 +1.0 4,639,276 - DZA65_RS21450 0.66 +1.2 4,639,304 - DZA65_RS21450 0.69 +0.8
Or see this region's nucleotide sequence