Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20730

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS20725 and DZA65_RS20730 are separated by 245 nucleotidesDZA65_RS20730 and DZA65_RS20735 are separated by 289 nucleotides DZA65_RS20725: DZA65_RS20725 - peptidylprolyl isomerase A, at 4,472,418 to 4,472,990 _RS20725 DZA65_RS20730: DZA65_RS20730 - enolase, at 4,473,236 to 4,474,390 _RS20730 DZA65_RS20735: DZA65_RS20735 - tryptophan--tRNA ligase, at 4,474,680 to 4,475,684 _RS20735 Position (kb) 4473 4474 4475Strain fitness (log2 ratio) -2 -1 0 1 2at 4472.274 kb on + strandat 4472.274 kb on + strandat 4472.274 kb on + strandat 4472.275 kb on - strandat 4472.275 kb on - strandat 4472.426 kb on + strandat 4472.487 kb on - strand, within DZA65_RS20725at 4472.487 kb on - strand, within DZA65_RS20725at 4472.654 kb on + strand, within DZA65_RS20725at 4472.655 kb on - strand, within DZA65_RS20725at 4472.732 kb on + strand, within DZA65_RS20725at 4472.732 kb on + strand, within DZA65_RS20725at 4472.732 kb on + strand, within DZA65_RS20725at 4472.732 kb on + strand, within DZA65_RS20725at 4472.732 kb on + strand, within DZA65_RS20725at 4472.733 kb on - strand, within DZA65_RS20725at 4472.733 kb on - strand, within DZA65_RS20725at 4472.733 kb on - strand, within DZA65_RS20725at 4472.800 kb on + strand, within DZA65_RS20725at 4472.818 kb on + strand, within DZA65_RS20725at 4472.818 kb on + strand, within DZA65_RS20725at 4472.818 kb on + strand, within DZA65_RS20725at 4472.818 kb on + strand, within DZA65_RS20725at 4472.818 kb on + strand, within DZA65_RS20725at 4472.818 kb on + strand, within DZA65_RS20725at 4472.818 kb on + strand, within DZA65_RS20725at 4472.819 kb on - strand, within DZA65_RS20725at 4472.819 kb on - strand, within DZA65_RS20725at 4472.819 kb on - strand, within DZA65_RS20725at 4472.819 kb on - strand, within DZA65_RS20725at 4472.819 kb on - strand, within DZA65_RS20725at 4472.819 kb on - strand, within DZA65_RS20725at 4472.819 kb on - strand, within DZA65_RS20725at 4472.819 kb on - strand, within DZA65_RS20725at 4472.956 kb on - strandat 4472.961 kb on + strandat 4472.964 kb on + strandat 4472.964 kb on + strandat 4472.964 kb on + strandat 4472.965 kb on - strandat 4472.965 kb on - strandat 4472.976 kb on + strandat 4472.977 kb on - strandat 4472.977 kb on - strandat 4472.977 kb on - strandat 4472.978 kb on + strandat 4472.978 kb on + strandat 4472.978 kb on + strandat 4472.978 kb on + strandat 4472.978 kb on + strandat 4472.978 kb on + strandat 4472.979 kb on - strandat 4472.979 kb on - strandat 4472.979 kb on - strandat 4472.979 kb on - strandat 4472.979 kb on - strandat 4472.979 kb on - strandat 4472.979 kb on - strandat 4472.979 kb on - strandat 4472.979 kb on - strandat 4473.026 kb on + strandat 4473.027 kb on - strandat 4473.039 kb on + strandat 4473.040 kb on - strandat 4473.066 kb on + strandat 4473.066 kb on + strandat 4473.067 kb on - strandat 4473.076 kb on + strandat 4473.115 kb on + strandat 4473.115 kb on + strandat 4473.115 kb on + strandat 4473.116 kb on - strandat 4473.116 kb on - strandat 4473.116 kb on - strandat 4473.127 kb on + strandat 4473.128 kb on - strandat 4473.128 kb on - strandat 4473.136 kb on + strandat 4473.136 kb on + strandat 4473.136 kb on + strandat 4473.137 kb on - strandat 4473.137 kb on - strandat 4473.138 kb on + strandat 4473.138 kb on + strandat 4473.138 kb on + strandat 4473.138 kb on + strandat 4473.138 kb on + strandat 4473.139 kb on - strandat 4473.139 kb on - strandat 4473.139 kb on - strandat 4473.139 kb on - strandat 4473.199 kb on - strandat 4473.254 kb on - strandat 4473.254 kb on - strandat 4473.254 kb on - strandat 4473.254 kb on - strandat 4473.254 kb on - strandat 4473.254 kb on - strandat 4473.254 kb on - strandat 4473.254 kb on - strandat 4473.254 kb on - strandat 4473.278 kb on - strandat 4473.278 kb on - strandat 4473.278 kb on - strandat 4474.430 kb on + strandat 4474.430 kb on + strandat 4474.430 kb on + strandat 4474.430 kb on + strandat 4474.430 kb on + strandat 4474.430 kb on + strandat 4474.430 kb on + strandat 4474.430 kb on + strandat 4474.430 kb on + strandat 4474.430 kb on + strandat 4474.431 kb on - strandat 4474.431 kb on - strandat 4474.431 kb on - strandat 4474.431 kb on - strandat 4474.431 kb on - strandat 4474.431 kb on - strandat 4474.431 kb on - strandat 4474.432 kb on + strandat 4474.432 kb on + strandat 4474.432 kb on + strandat 4474.433 kb on - strandat 4474.433 kb on - strandat 4474.438 kb on + strandat 4474.438 kb on + strandat 4474.438 kb on + strandat 4474.438 kb on + strandat 4474.439 kb on - strandat 4474.439 kb on - strandat 4474.439 kb on - strandat 4474.439 kb on - strandat 4474.439 kb on - strandat 4474.439 kb on - strandat 4474.545 kb on - strandat 4474.593 kb on - strandat 4474.593 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,472,274 + -1.9
4,472,274 + -0.3
4,472,274 + -0.3
4,472,275 - +0.8
4,472,275 - +2.2
4,472,426 + -0.2
4,472,487 - DZA65_RS20725 0.12 -0.8
4,472,487 - DZA65_RS20725 0.12 -1.1
4,472,654 + DZA65_RS20725 0.41 -0.0
4,472,655 - DZA65_RS20725 0.41 +0.0
4,472,732 + DZA65_RS20725 0.55 -0.4
4,472,732 + DZA65_RS20725 0.55 -0.4
4,472,732 + DZA65_RS20725 0.55 -0.5
4,472,732 + DZA65_RS20725 0.55 +0.5
4,472,732 + DZA65_RS20725 0.55 +0.6
4,472,733 - DZA65_RS20725 0.55 +0.2
4,472,733 - DZA65_RS20725 0.55 +1.2
4,472,733 - DZA65_RS20725 0.55 -0.1
4,472,800 + DZA65_RS20725 0.67 +1.7
4,472,818 + DZA65_RS20725 0.70 -0.5
4,472,818 + DZA65_RS20725 0.70 -0.2
4,472,818 + DZA65_RS20725 0.70 -1.5
4,472,818 + DZA65_RS20725 0.70 -0.2
4,472,818 + DZA65_RS20725 0.70 -0.6
4,472,818 + DZA65_RS20725 0.70 +1.2
4,472,818 + DZA65_RS20725 0.70 -0.6
4,472,819 - DZA65_RS20725 0.70 -0.5
4,472,819 - DZA65_RS20725 0.70 +0.7
4,472,819 - DZA65_RS20725 0.70 -1.2
4,472,819 - DZA65_RS20725 0.70 +0.6
4,472,819 - DZA65_RS20725 0.70 -0.4
4,472,819 - DZA65_RS20725 0.70 -0.9
4,472,819 - DZA65_RS20725 0.70 -0.1
4,472,819 - DZA65_RS20725 0.70 -0.4
4,472,956 - -1.8
4,472,961 + +0.2
4,472,964 + +0.8
4,472,964 + -0.2
4,472,964 + -0.9
4,472,965 - -0.3
4,472,965 - +0.1
4,472,976 + -0.5
4,472,977 - +0.2
4,472,977 - -0.8
4,472,977 - +0.5
4,472,978 + -0.4
4,472,978 + +0.8
4,472,978 + -1.3
4,472,978 + +0.3
4,472,978 + -1.0
4,472,978 + -0.4
4,472,979 - -0.8
4,472,979 - +0.8
4,472,979 - -0.6
4,472,979 - -0.4
4,472,979 - +1.0
4,472,979 - -0.3
4,472,979 - -0.2
4,472,979 - +0.0
4,472,979 - -0.6
4,473,026 + +0.4
4,473,027 - -2.0
4,473,039 + -0.3
4,473,040 - -0.3
4,473,066 + -0.2
4,473,066 + +0.7
4,473,067 - -2.3
4,473,076 + -1.8
4,473,115 + -1.1
4,473,115 + +0.2
4,473,115 + -0.5
4,473,116 - -0.7
4,473,116 - -0.8
4,473,116 - +0.4
4,473,127 + -0.6
4,473,128 - +0.2
4,473,128 - -1.8
4,473,136 + -0.1
4,473,136 + -1.0
4,473,136 + -1.5
4,473,137 - +2.7
4,473,137 - +1.2
4,473,138 + -1.0
4,473,138 + -1.3
4,473,138 + +1.2
4,473,138 + +0.2
4,473,138 + +0.7
4,473,139 - -0.3
4,473,139 - -1.6
4,473,139 - -0.0
4,473,139 - -1.2
4,473,199 - -0.1
4,473,254 - -1.4
4,473,254 - -1.4
4,473,254 - -0.6
4,473,254 - +0.4
4,473,254 - -0.8
4,473,254 - -2.4
4,473,254 - -0.8
4,473,254 - +0.2
4,473,254 - -0.4
4,473,278 - -1.1
4,473,278 - +0.2
4,473,278 - -0.3
4,474,430 + +0.4
4,474,430 + -0.8
4,474,430 + +2.2
4,474,430 + -1.6
4,474,430 + -0.8
4,474,430 + -1.0
4,474,430 + -0.2
4,474,430 + -0.7
4,474,430 + -0.8
4,474,430 + -2.4
4,474,431 - +0.6
4,474,431 - +0.2
4,474,431 - -0.3
4,474,431 - -0.1
4,474,431 - -0.1
4,474,431 - -0.7
4,474,431 - +0.8
4,474,432 + +0.3
4,474,432 + +0.6
4,474,432 + +1.9
4,474,433 - -0.1
4,474,433 - -0.9
4,474,438 + +1.2
4,474,438 + -1.4
4,474,438 + +0.4
4,474,438 + -0.1
4,474,439 - -0.8
4,474,439 - +0.3
4,474,439 - -1.1
4,474,439 - -0.1
4,474,439 - -1.8
4,474,439 - +0.4
4,474,545 - -0.2
4,474,593 - -0.9
4,474,593 - +0.2

Or see this region's nucleotide sequence