Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS20530 and DZA65_RS20535 are separated by 90 nucleotides DZA65_RS20535 and DZA65_RS20540 are separated by 96 nucleotides DZA65_RS20540 and DZA65_RS20545 are separated by 132 nucleotides DZA65_RS20545 and DZA65_RS20550 are separated by 11 nucleotides
DZA65_RS20530: DZA65_RS20530 - elongation factor G, at 4,431,152 to 4,433,266
_RS20530
DZA65_RS20535: DZA65_RS20535 - 30S ribosomal protein S7, at 4,433,357 to 4,433,827
_RS20535
DZA65_RS20540: DZA65_RS20540 - 30S ribosomal protein S12, at 4,433,924 to 4,434,298
_RS20540
DZA65_RS20545: DZA65_RS20545 - sulfurtransferase complex subunit TusB, at 4,434,431 to 4,434,718
_RS20545
DZA65_RS20550: DZA65_RS20550 - sulfurtransferase complex subunit TusC, at 4,434,730 to 4,435,089
_RS20550
Position (kb)
4433
4434 Strain fitness (log2 ratio)
-2
-1
0
1 at 4433.298 kb on - strand at 4433.298 kb on - strand at 4433.298 kb on - strand at 4433.298 kb on - strand at 4434.337 kb on - strand at 4434.415 kb on - strand at 4434.415 kb on - strand at 4434.416 kb on + strand at 4434.433 kb on - strand at 4434.465 kb on - strand, within DZA65_RS20545 at 4434.481 kb on + strand, within DZA65_RS20545 at 4434.483 kb on + strand, within DZA65_RS20545 at 4434.483 kb on + strand, within DZA65_RS20545 at 4434.494 kb on + strand, within DZA65_RS20545 at 4434.522 kb on - strand, within DZA65_RS20545 at 4434.555 kb on + strand, within DZA65_RS20545 at 4434.709 kb on + strand at 4434.709 kb on + strand at 4434.709 kb on + strand at 4434.710 kb on - strand at 4434.710 kb on - strand at 4434.748 kb on - strand at 4434.752 kb on + strand at 4434.752 kb on + strand at 4434.753 kb on - strand at 4434.753 kb on - strand at 4434.756 kb on + strand at 4434.756 kb on + strand at 4434.756 kb on + strand at 4434.757 kb on - strand at 4434.757 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,433,298 - -1.2 4,433,298 - -0.2 4,433,298 - -0.9 4,433,298 - +0.1 4,434,337 - +1.1 4,434,415 - -0.4 4,434,415 - -0.7 4,434,416 + -0.8 4,434,433 - -0.4 4,434,465 - DZA65_RS20545 0.12 -1.9 4,434,481 + DZA65_RS20545 0.17 +0.6 4,434,483 + DZA65_RS20545 0.18 -0.1 4,434,483 + DZA65_RS20545 0.18 +0.1 4,434,494 + DZA65_RS20545 0.22 +1.6 4,434,522 - DZA65_RS20545 0.32 -1.2 4,434,555 + DZA65_RS20545 0.43 -0.2 4,434,709 + -1.2 4,434,709 + -1.2 4,434,709 + -0.7 4,434,710 - -0.6 4,434,710 - +1.1 4,434,748 - +0.1 4,434,752 + +0.1 4,434,752 + +0.8 4,434,753 - -1.2 4,434,753 - +0.1 4,434,756 + -1.4 4,434,756 + -0.9 4,434,756 + -1.9 4,434,757 - -0.9 4,434,757 - +1.1
Or see this region's nucleotide sequence