Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20535

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS20530 and DZA65_RS20535 are separated by 90 nucleotidesDZA65_RS20535 and DZA65_RS20540 are separated by 96 nucleotidesDZA65_RS20540 and DZA65_RS20545 are separated by 132 nucleotidesDZA65_RS20545 and DZA65_RS20550 are separated by 11 nucleotides DZA65_RS20530: DZA65_RS20530 - elongation factor G, at 4,431,152 to 4,433,266 _RS20530 DZA65_RS20535: DZA65_RS20535 - 30S ribosomal protein S7, at 4,433,357 to 4,433,827 _RS20535 DZA65_RS20540: DZA65_RS20540 - 30S ribosomal protein S12, at 4,433,924 to 4,434,298 _RS20540 DZA65_RS20545: DZA65_RS20545 - sulfurtransferase complex subunit TusB, at 4,434,431 to 4,434,718 _RS20545 DZA65_RS20550: DZA65_RS20550 - sulfurtransferase complex subunit TusC, at 4,434,730 to 4,435,089 _RS20550 Position (kb) 4433 4434Strain fitness (log2 ratio) -2 -1 0 1at 4433.298 kb on - strandat 4433.298 kb on - strandat 4433.298 kb on - strandat 4433.298 kb on - strandat 4434.337 kb on - strandat 4434.415 kb on - strandat 4434.415 kb on - strandat 4434.416 kb on + strandat 4434.433 kb on - strandat 4434.465 kb on - strand, within DZA65_RS20545at 4434.481 kb on + strand, within DZA65_RS20545at 4434.483 kb on + strand, within DZA65_RS20545at 4434.483 kb on + strand, within DZA65_RS20545at 4434.494 kb on + strand, within DZA65_RS20545at 4434.522 kb on - strand, within DZA65_RS20545at 4434.555 kb on + strand, within DZA65_RS20545at 4434.709 kb on + strandat 4434.709 kb on + strandat 4434.709 kb on + strandat 4434.710 kb on - strandat 4434.710 kb on - strandat 4434.748 kb on - strandat 4434.752 kb on + strandat 4434.752 kb on + strandat 4434.753 kb on - strandat 4434.753 kb on - strandat 4434.756 kb on + strandat 4434.756 kb on + strandat 4434.756 kb on + strandat 4434.757 kb on - strandat 4434.757 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,433,298 - -1.2
4,433,298 - -0.2
4,433,298 - -0.9
4,433,298 - +0.1
4,434,337 - +1.1
4,434,415 - -0.4
4,434,415 - -0.7
4,434,416 + -0.8
4,434,433 - -0.4
4,434,465 - DZA65_RS20545 0.12 -1.9
4,434,481 + DZA65_RS20545 0.17 +0.6
4,434,483 + DZA65_RS20545 0.18 -0.1
4,434,483 + DZA65_RS20545 0.18 +0.1
4,434,494 + DZA65_RS20545 0.22 +1.6
4,434,522 - DZA65_RS20545 0.32 -1.2
4,434,555 + DZA65_RS20545 0.43 -0.2
4,434,709 + -1.2
4,434,709 + -1.2
4,434,709 + -0.7
4,434,710 - -0.6
4,434,710 - +1.1
4,434,748 - +0.1
4,434,752 + +0.1
4,434,752 + +0.8
4,434,753 - -1.2
4,434,753 - +0.1
4,434,756 + -1.4
4,434,756 + -0.9
4,434,756 + -1.9
4,434,757 - -0.9
4,434,757 - +1.1

Or see this region's nucleotide sequence