Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20445

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS20430 and DZA65_RS20435 are separated by 13 nucleotidesDZA65_RS20435 and DZA65_RS20440 are separated by 33 nucleotidesDZA65_RS20440 and DZA65_RS20445 are separated by 13 nucleotidesDZA65_RS20445 and DZA65_RS20450 are separated by 14 nucleotidesDZA65_RS20450 and DZA65_RS20455 are separated by 10 nucleotidesDZA65_RS20455 and DZA65_RS20460 are separated by 164 nucleotides DZA65_RS20430: DZA65_RS20430 - 50S ribosomal protein L6, at 4,421,076 to 4,421,609 _RS20430 DZA65_RS20435: DZA65_RS20435 - 30S ribosomal protein S8, at 4,421,623 to 4,422,015 _RS20435 DZA65_RS20440: DZA65_RS20440 - 30S ribosomal protein S14, at 4,422,049 to 4,422,354 _RS20440 DZA65_RS20445: DZA65_RS20445 - 50S ribosomal protein L5, at 4,422,368 to 4,422,907 _RS20445 DZA65_RS20450: DZA65_RS20450 - 50S ribosomal protein L24, at 4,422,922 to 4,423,236 _RS20450 DZA65_RS20455: DZA65_RS20455 - 50S ribosomal protein L14, at 4,423,247 to 4,423,618 _RS20455 DZA65_RS20460: DZA65_RS20460 - 30S ribosomal protein S17, at 4,423,783 to 4,424,037 _RS20460 Position (kb) 4422 4423Strain fitness (log2 ratio) -1 0 1at 4423.724 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,423,724 - -0.6

Or see this region's nucleotide sequence