Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS20335 and DZA65_RS20340 are separated by 112 nucleotides DZA65_RS20340 and DZA65_RS20345 are separated by 38 nucleotides DZA65_RS20345 and DZA65_RS20350 are separated by 60 nucleotides
DZA65_RS20335: DZA65_RS20335 - DNA-protecting protein DprA, at 4,408,218 to 4,409,351
_RS20335
DZA65_RS20340: DZA65_RS20340 - peptide deformylase, at 4,409,464 to 4,409,973
_RS20340
DZA65_RS20345: DZA65_RS20345 - methionyl-tRNA formyltransferase, at 4,410,012 to 4,410,953
_RS20345
DZA65_RS20350: DZA65_RS20350 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 4,411,014 to 4,412,309
_RS20350
Position (kb) 4410
4411 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4409.037 kb on + strand, within DZA65_RS20335 at 4409.037 kb on + strand, within DZA65_RS20335 at 4409.038 kb on - strand, within DZA65_RS20335 at 4409.038 kb on - strand, within DZA65_RS20335 at 4409.038 kb on - strand, within DZA65_RS20335 at 4409.038 kb on - strand, within DZA65_RS20335 at 4409.038 kb on - strand, within DZA65_RS20335 at 4409.038 kb on - strand, within DZA65_RS20335 at 4409.038 kb on - strand, within DZA65_RS20335 at 4409.038 kb on - strand, within DZA65_RS20335 at 4409.038 kb on - strand, within DZA65_RS20335 at 4409.038 kb on - strand, within DZA65_RS20335 at 4409.038 kb on - strand, within DZA65_RS20335 at 4409.038 kb on - strand, within DZA65_RS20335 at 4409.038 kb on - strand, within DZA65_RS20335 at 4409.038 kb on - strand, within DZA65_RS20335 at 4409.040 kb on + strand, within DZA65_RS20335 at 4409.040 kb on + strand, within DZA65_RS20335 at 4409.040 kb on + strand, within DZA65_RS20335 at 4409.062 kb on + strand, within DZA65_RS20335 at 4409.062 kb on + strand, within DZA65_RS20335 at 4409.062 kb on + strand, within DZA65_RS20335 at 4409.062 kb on + strand, within DZA65_RS20335 at 4409.062 kb on + strand, within DZA65_RS20335 at 4409.062 kb on + strand, within DZA65_RS20335 at 4409.062 kb on + strand, within DZA65_RS20335 at 4409.062 kb on + strand, within DZA65_RS20335 at 4409.062 kb on + strand, within DZA65_RS20335 at 4409.063 kb on - strand, within DZA65_RS20335 at 4409.063 kb on - strand, within DZA65_RS20335 at 4409.063 kb on - strand, within DZA65_RS20335 at 4409.063 kb on - strand, within DZA65_RS20335 at 4409.063 kb on - strand, within DZA65_RS20335 at 4409.071 kb on - strand, within DZA65_RS20335 at 4409.090 kb on + strand, within DZA65_RS20335 at 4409.091 kb on - strand, within DZA65_RS20335 at 4409.091 kb on - strand, within DZA65_RS20335 at 4409.091 kb on - strand, within DZA65_RS20335 at 4409.091 kb on - strand, within DZA65_RS20335 at 4409.091 kb on - strand, within DZA65_RS20335 at 4409.165 kb on + strand, within DZA65_RS20335 at 4409.165 kb on + strand, within DZA65_RS20335 at 4409.166 kb on - strand, within DZA65_RS20335 at 4409.166 kb on - strand, within DZA65_RS20335 at 4409.166 kb on - strand, within DZA65_RS20335 at 4409.352 kb on - strand at 4409.352 kb on - strand at 4409.387 kb on + strand at 4409.387 kb on + strand at 4409.414 kb on - strand at 4409.418 kb on + strand at 4409.447 kb on + strand at 4409.899 kb on + strand, within DZA65_RS20340 at 4409.971 kb on + strand at 4409.971 kb on + strand at 4409.971 kb on + strand at 4410.941 kb on + strand at 4410.941 kb on + strand at 4410.941 kb on + strand at 4410.941 kb on + strand at 4410.941 kb on + strand at 4410.942 kb on - strand at 4410.942 kb on - strand at 4410.954 kb on + strand at 4410.971 kb on + strand at 4410.971 kb on + strand at 4410.971 kb on + strand at 4410.971 kb on + strand at 4410.971 kb on + strand at 4410.971 kb on + strand at 4410.971 kb on + strand at 4410.971 kb on + strand at 4410.971 kb on + strand at 4410.971 kb on + strand at 4410.971 kb on + strand at 4410.971 kb on + strand at 4410.972 kb on - strand at 4410.972 kb on - strand at 4410.972 kb on - strand at 4410.972 kb on - strand at 4410.972 kb on - strand at 4410.972 kb on - strand at 4410.972 kb on - strand at 4410.972 kb on - strand at 4410.972 kb on - strand at 4411.026 kb on + strand at 4411.027 kb on - strand at 4411.165 kb on + strand, within DZA65_RS20350 at 4411.165 kb on + strand, within DZA65_RS20350 at 4411.166 kb on - strand, within DZA65_RS20350 at 4411.168 kb on + strand, within DZA65_RS20350 at 4411.169 kb on - strand, within DZA65_RS20350 at 4411.169 kb on - strand, within DZA65_RS20350 at 4411.169 kb on - strand, within DZA65_RS20350 at 4411.174 kb on + strand, within DZA65_RS20350 at 4411.174 kb on + strand, within DZA65_RS20350 at 4411.174 kb on + strand, within DZA65_RS20350 at 4411.174 kb on + strand, within DZA65_RS20350 at 4411.174 kb on + strand, within DZA65_RS20350 at 4411.175 kb on - strand, within DZA65_RS20350 at 4411.177 kb on + strand, within DZA65_RS20350 at 4411.177 kb on + strand, within DZA65_RS20350 at 4411.178 kb on - strand, within DZA65_RS20350 at 4411.178 kb on - strand, within DZA65_RS20350 at 4411.178 kb on - strand, within DZA65_RS20350 at 4411.178 kb on - strand, within DZA65_RS20350 at 4411.178 kb on - strand, within DZA65_RS20350 at 4411.195 kb on - strand, within DZA65_RS20350 at 4411.195 kb on - strand, within DZA65_RS20350 at 4411.195 kb on - strand, within DZA65_RS20350 at 4411.241 kb on - strand, within DZA65_RS20350 at 4411.241 kb on - strand, within DZA65_RS20350 at 4411.241 kb on - strand at 4411.241 kb on - strand, within DZA65_RS20350 at 4411.248 kb on + strand, within DZA65_RS20350 at 4411.248 kb on + strand, within DZA65_RS20350 at 4411.249 kb on - strand, within DZA65_RS20350 at 4411.249 kb on - strand, within DZA65_RS20350 at 4411.249 kb on - strand, within DZA65_RS20350 at 4411.249 kb on - strand, within DZA65_RS20350 at 4411.249 kb on - strand, within DZA65_RS20350 at 4411.261 kb on + strand, within DZA65_RS20350 at 4411.262 kb on - strand, within DZA65_RS20350 at 4411.270 kb on - strand, within DZA65_RS20350 at 4411.375 kb on + strand, within DZA65_RS20350 at 4411.440 kb on + strand, within DZA65_RS20350 at 4411.541 kb on - strand, within DZA65_RS20350 at 4411.541 kb on - strand, within DZA65_RS20350 at 4411.541 kb on - strand, within DZA65_RS20350 at 4411.563 kb on - strand, within DZA65_RS20350 at 4411.586 kb on - strand, within DZA65_RS20350 at 4411.603 kb on + strand, within DZA65_RS20350 at 4411.603 kb on + strand, within DZA65_RS20350 at 4411.603 kb on + strand, within DZA65_RS20350 at 4411.603 kb on + strand, within DZA65_RS20350 at 4411.603 kb on + strand, within DZA65_RS20350 at 4411.604 kb on - strand, within DZA65_RS20350 at 4411.604 kb on - strand, within DZA65_RS20350 at 4411.604 kb on - strand, within DZA65_RS20350 at 4411.604 kb on - strand at 4411.604 kb on - strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.606 kb on + strand, within DZA65_RS20350 at 4411.607 kb on - strand, within DZA65_RS20350 at 4411.607 kb on - strand, within DZA65_RS20350 at 4411.607 kb on - strand, within DZA65_RS20350 at 4411.607 kb on - strand, within DZA65_RS20350 at 4411.607 kb on - strand, within DZA65_RS20350 at 4411.607 kb on - strand, within DZA65_RS20350 at 4411.607 kb on - strand, within DZA65_RS20350 at 4411.607 kb on - strand, within DZA65_RS20350 at 4411.607 kb on - strand, within DZA65_RS20350 at 4411.607 kb on - strand, within DZA65_RS20350 at 4411.607 kb on - strand, within DZA65_RS20350 at 4411.607 kb on - strand, within DZA65_RS20350 at 4411.607 kb on - strand, within DZA65_RS20350 at 4411.607 kb on - strand, within DZA65_RS20350 at 4411.607 kb on - strand, within DZA65_RS20350 at 4411.607 kb on - strand, within DZA65_RS20350 at 4411.626 kb on + strand, within DZA65_RS20350 at 4411.627 kb on - strand, within DZA65_RS20350 at 4411.702 kb on + strand, within DZA65_RS20350 at 4411.703 kb on - strand, within DZA65_RS20350 at 4411.771 kb on + strand, within DZA65_RS20350 at 4411.771 kb on + strand, within DZA65_RS20350 at 4411.771 kb on + strand, within DZA65_RS20350 at 4411.771 kb on + strand, within DZA65_RS20350 at 4411.771 kb on + strand, within DZA65_RS20350 at 4411.772 kb on - strand, within DZA65_RS20350 at 4411.772 kb on - strand, within DZA65_RS20350 at 4411.772 kb on - strand, within DZA65_RS20350 at 4411.804 kb on + strand, within DZA65_RS20350 at 4411.804 kb on + strand, within DZA65_RS20350 at 4411.804 kb on + strand, within DZA65_RS20350 at 4411.804 kb on + strand, within DZA65_RS20350 at 4411.804 kb on + strand, within DZA65_RS20350 at 4411.804 kb on + strand, within DZA65_RS20350 at 4411.804 kb on + strand, within DZA65_RS20350 at 4411.804 kb on + strand, within DZA65_RS20350 at 4411.804 kb on + strand, within DZA65_RS20350 at 4411.804 kb on + strand, within DZA65_RS20350 at 4411.804 kb on + strand, within DZA65_RS20350 at 4411.805 kb on - strand, within DZA65_RS20350 at 4411.805 kb on - strand, within DZA65_RS20350 at 4411.805 kb on - strand, within DZA65_RS20350 at 4411.805 kb on - strand, within DZA65_RS20350 at 4411.805 kb on - strand, within DZA65_RS20350 at 4411.805 kb on - strand, within DZA65_RS20350 at 4411.831 kb on + strand at 4411.831 kb on + strand, within DZA65_RS20350 at 4411.832 kb on - strand, within DZA65_RS20350 at 4411.832 kb on - strand, within DZA65_RS20350 at 4411.832 kb on - strand, within DZA65_RS20350 at 4411.832 kb on - strand, within DZA65_RS20350
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,409,037 + DZA65_RS20335 0.72 -0.7 4,409,037 + DZA65_RS20335 0.72 -0.7 4,409,038 - DZA65_RS20335 0.72 -1.2 4,409,038 - DZA65_RS20335 0.72 -0.6 4,409,038 - DZA65_RS20335 0.72 -1.2 4,409,038 - DZA65_RS20335 0.72 +0.1 4,409,038 - DZA65_RS20335 0.72 -0.4 4,409,038 - DZA65_RS20335 0.72 +0.1 4,409,038 - DZA65_RS20335 0.72 -1.7 4,409,038 - DZA65_RS20335 0.72 -0.7 4,409,038 - DZA65_RS20335 0.72 +1.8 4,409,038 - DZA65_RS20335 0.72 -0.1 4,409,038 - DZA65_RS20335 0.72 -0.8 4,409,038 - DZA65_RS20335 0.72 -0.0 4,409,038 - DZA65_RS20335 0.72 -0.6 4,409,038 - DZA65_RS20335 0.72 +0.1 4,409,040 + DZA65_RS20335 0.72 +0.3 4,409,040 + DZA65_RS20335 0.72 -0.9 4,409,040 + DZA65_RS20335 0.72 -0.1 4,409,062 + DZA65_RS20335 0.74 -0.4 4,409,062 + DZA65_RS20335 0.74 +0.2 4,409,062 + DZA65_RS20335 0.74 -1.0 4,409,062 + DZA65_RS20335 0.74 -0.4 4,409,062 + DZA65_RS20335 0.74 -1.7 4,409,062 + DZA65_RS20335 0.74 +0.1 4,409,062 + DZA65_RS20335 0.74 -0.9 4,409,062 + DZA65_RS20335 0.74 -0.6 4,409,062 + DZA65_RS20335 0.74 -0.4 4,409,063 - DZA65_RS20335 0.75 -0.3 4,409,063 - DZA65_RS20335 0.75 -0.8 4,409,063 - DZA65_RS20335 0.75 +1.1 4,409,063 - DZA65_RS20335 0.75 +0.4 4,409,063 - DZA65_RS20335 0.75 -1.2 4,409,071 - DZA65_RS20335 0.75 -1.0 4,409,090 + DZA65_RS20335 0.77 -0.9 4,409,091 - DZA65_RS20335 0.77 -0.4 4,409,091 - DZA65_RS20335 0.77 -1.2 4,409,091 - DZA65_RS20335 0.77 -0.3 4,409,091 - DZA65_RS20335 0.77 -1.5 4,409,091 - DZA65_RS20335 0.77 -1.2 4,409,165 + DZA65_RS20335 0.84 +0.1 4,409,165 + DZA65_RS20335 0.84 -0.6 4,409,166 - DZA65_RS20335 0.84 +0.2 4,409,166 - DZA65_RS20335 0.84 -0.4 4,409,166 - DZA65_RS20335 0.84 -1.9 4,409,352 - -1.6 4,409,352 - -1.4 4,409,387 + -0.2 4,409,387 + +0.2 4,409,414 - +2.1 4,409,418 + -0.9 4,409,447 + -0.7 4,409,899 + DZA65_RS20340 0.85 -0.9 4,409,971 + -0.3 4,409,971 + -1.2 4,409,971 + +0.4 4,410,941 + -1.4 4,410,941 + -0.4 4,410,941 + -1.3 4,410,941 + -0.1 4,410,941 + -0.2 4,410,942 - -1.2 4,410,942 - -0.9 4,410,954 + -1.3 4,410,971 + -0.2 4,410,971 + -1.2 4,410,971 + -1.3 4,410,971 + -1.2 4,410,971 + +0.8 4,410,971 + -0.4 4,410,971 + +2.7 4,410,971 + -0.2 4,410,971 + +0.3 4,410,971 + +0.1 4,410,971 + +0.9 4,410,971 + -1.1 4,410,972 - -2.4 4,410,972 - +1.1 4,410,972 - +0.0 4,410,972 - +0.1 4,410,972 - +0.4 4,410,972 - -0.3 4,410,972 - +0.7 4,410,972 - -0.9 4,410,972 - +0.4 4,411,026 + +1.1 4,411,027 - +1.1 4,411,165 + DZA65_RS20350 0.12 +0.2 4,411,165 + DZA65_RS20350 0.12 +0.6 4,411,166 - DZA65_RS20350 0.12 -1.0 4,411,168 + DZA65_RS20350 0.12 -0.2 4,411,169 - DZA65_RS20350 0.12 +0.8 4,411,169 - DZA65_RS20350 0.12 -0.4 4,411,169 - DZA65_RS20350 0.12 +0.4 4,411,174 + DZA65_RS20350 0.12 -1.2 4,411,174 + DZA65_RS20350 0.12 -0.7 4,411,174 + DZA65_RS20350 0.12 -0.3 4,411,174 + DZA65_RS20350 0.12 -0.4 4,411,174 + DZA65_RS20350 0.12 -1.0 4,411,175 - DZA65_RS20350 0.12 -1.4 4,411,177 + DZA65_RS20350 0.13 +0.0 4,411,177 + DZA65_RS20350 0.13 +0.1 4,411,178 - DZA65_RS20350 0.13 -1.2 4,411,178 - DZA65_RS20350 0.13 -0.9 4,411,178 - DZA65_RS20350 0.13 -2.0 4,411,178 - DZA65_RS20350 0.13 -0.2 4,411,178 - DZA65_RS20350 0.13 -0.9 4,411,195 - DZA65_RS20350 0.14 -0.9 4,411,195 - DZA65_RS20350 0.14 +0.6 4,411,195 - DZA65_RS20350 0.14 +0.6 4,411,241 - DZA65_RS20350 0.18 -0.4 4,411,241 - DZA65_RS20350 0.18 -0.5 4,411,241 - -1.2 4,411,241 - DZA65_RS20350 0.18 +0.6 4,411,248 + DZA65_RS20350 0.18 +1.1 4,411,248 + DZA65_RS20350 0.18 +1.1 4,411,249 - DZA65_RS20350 0.18 -0.4 4,411,249 - DZA65_RS20350 0.18 +0.8 4,411,249 - DZA65_RS20350 0.18 -0.5 4,411,249 - DZA65_RS20350 0.18 -0.6 4,411,249 - DZA65_RS20350 0.18 +0.1 4,411,261 + DZA65_RS20350 0.19 +0.3 4,411,262 - DZA65_RS20350 0.19 -0.6 4,411,270 - DZA65_RS20350 0.20 -0.4 4,411,375 + DZA65_RS20350 0.28 -0.4 4,411,440 + DZA65_RS20350 0.33 +1.1 4,411,541 - DZA65_RS20350 0.41 -0.6 4,411,541 - DZA65_RS20350 0.41 -1.7 4,411,541 - DZA65_RS20350 0.41 +0.8 4,411,563 - DZA65_RS20350 0.42 -0.3 4,411,586 - DZA65_RS20350 0.44 -0.3 4,411,603 + DZA65_RS20350 0.45 -0.7 4,411,603 + DZA65_RS20350 0.45 -1.1 4,411,603 + DZA65_RS20350 0.45 -0.1 4,411,603 + DZA65_RS20350 0.45 -1.5 4,411,603 + DZA65_RS20350 0.45 +1.1 4,411,604 - DZA65_RS20350 0.46 -0.7 4,411,604 - DZA65_RS20350 0.46 -2.0 4,411,604 - DZA65_RS20350 0.46 -0.4 4,411,604 - -2.0 4,411,604 - DZA65_RS20350 0.46 +0.5 4,411,606 + DZA65_RS20350 0.46 -1.2 4,411,606 + DZA65_RS20350 0.46 -0.5 4,411,606 + DZA65_RS20350 0.46 +1.1 4,411,606 + DZA65_RS20350 0.46 +0.3 4,411,606 + DZA65_RS20350 0.46 -2.4 4,411,606 + DZA65_RS20350 0.46 -0.6 4,411,606 + DZA65_RS20350 0.46 +0.0 4,411,606 + DZA65_RS20350 0.46 -2.1 4,411,606 + DZA65_RS20350 0.46 -1.4 4,411,606 + DZA65_RS20350 0.46 -0.4 4,411,606 + DZA65_RS20350 0.46 -2.2 4,411,606 + DZA65_RS20350 0.46 -1.2 4,411,606 + DZA65_RS20350 0.46 -0.2 4,411,606 + DZA65_RS20350 0.46 +0.6 4,411,606 + DZA65_RS20350 0.46 -1.2 4,411,606 + DZA65_RS20350 0.46 +0.7 4,411,606 + DZA65_RS20350 0.46 -2.2 4,411,606 + DZA65_RS20350 0.46 -0.2 4,411,606 + DZA65_RS20350 0.46 -0.7 4,411,607 - DZA65_RS20350 0.46 +0.7 4,411,607 - DZA65_RS20350 0.46 -0.9 4,411,607 - DZA65_RS20350 0.46 -1.4 4,411,607 - DZA65_RS20350 0.46 -0.4 4,411,607 - DZA65_RS20350 0.46 -0.6 4,411,607 - DZA65_RS20350 0.46 +0.0 4,411,607 - DZA65_RS20350 0.46 -0.1 4,411,607 - DZA65_RS20350 0.46 -0.6 4,411,607 - DZA65_RS20350 0.46 -1.2 4,411,607 - DZA65_RS20350 0.46 +0.1 4,411,607 - DZA65_RS20350 0.46 +0.8 4,411,607 - DZA65_RS20350 0.46 +0.4 4,411,607 - DZA65_RS20350 0.46 -0.4 4,411,607 - DZA65_RS20350 0.46 +1.1 4,411,607 - DZA65_RS20350 0.46 -0.6 4,411,607 - DZA65_RS20350 0.46 -1.4 4,411,626 + DZA65_RS20350 0.47 -2.0 4,411,627 - DZA65_RS20350 0.47 +1.1 4,411,702 + DZA65_RS20350 0.53 +0.1 4,411,703 - DZA65_RS20350 0.53 +0.4 4,411,771 + DZA65_RS20350 0.58 -0.1 4,411,771 + DZA65_RS20350 0.58 +1.1 4,411,771 + DZA65_RS20350 0.58 -1.2 4,411,771 + DZA65_RS20350 0.58 -0.7 4,411,771 + DZA65_RS20350 0.58 -0.2 4,411,772 - DZA65_RS20350 0.58 +0.1 4,411,772 - DZA65_RS20350 0.58 -0.1 4,411,772 - DZA65_RS20350 0.58 -0.4 4,411,804 + DZA65_RS20350 0.61 -0.4 4,411,804 + DZA65_RS20350 0.61 +2.1 4,411,804 + DZA65_RS20350 0.61 +0.6 4,411,804 + DZA65_RS20350 0.61 +1.9 4,411,804 + DZA65_RS20350 0.61 -1.2 4,411,804 + DZA65_RS20350 0.61 -1.4 4,411,804 + DZA65_RS20350 0.61 -0.2 4,411,804 + DZA65_RS20350 0.61 +1.1 4,411,804 + DZA65_RS20350 0.61 -0.3 4,411,804 + DZA65_RS20350 0.61 -0.9 4,411,804 + DZA65_RS20350 0.61 -1.2 4,411,805 - DZA65_RS20350 0.61 +0.6 4,411,805 - DZA65_RS20350 0.61 -0.9 4,411,805 - DZA65_RS20350 0.61 +2.1 4,411,805 - DZA65_RS20350 0.61 +0.6 4,411,805 - DZA65_RS20350 0.61 -0.4 4,411,805 - DZA65_RS20350 0.61 +0.7 4,411,831 + -0.9 4,411,831 + DZA65_RS20350 0.63 -1.2 4,411,832 - DZA65_RS20350 0.63 -0.1 4,411,832 - DZA65_RS20350 0.63 +0.6 4,411,832 - DZA65_RS20350 0.63 -0.2 4,411,832 - DZA65_RS20350 0.63 -1.7
Or see this region's nucleotide sequence