Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19595 and DZA65_RS19600 overlap by 8 nucleotides DZA65_RS19600 and DZA65_RS22990 are separated by 176 nucleotides DZA65_RS22990 and DZA65_RS19610 are separated by 187 nucleotides DZA65_RS19610 and DZA65_RS19615 are separated by 110 nucleotides DZA65_RS19615 and DZA65_RS19620 are separated by 99 nucleotides
DZA65_RS19595: DZA65_RS19595 - biosynthetic arginine decarboxylase, at 4,244,834 to 4,246,810
_RS19595
DZA65_RS19600: DZA65_RS19600 - hypothetical protein, at 4,246,803 to 4,246,961
_RS19600
DZA65_RS22990: DZA65_RS22990 - hypothetical protein, at 4,247,138 to 4,247,425
_RS22990
DZA65_RS19610: DZA65_RS19610 - methionine adenosyltransferase, at 4,247,613 to 4,248,767
_RS19610
DZA65_RS19615: DZA65_RS19615 - SprT family zinc-dependent metalloprotease, at 4,248,878 to 4,249,390
_RS19615
DZA65_RS19620: DZA65_RS19620 - deoxyribonuclease I, at 4,249,490 to 4,250,188
_RS19620
Position (kb) 4247
4248
4249 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4246.616 kb on + strand at 4246.616 kb on + strand at 4246.617 kb on - strand at 4246.666 kb on - strand at 4246.666 kb on - strand at 4246.666 kb on - strand at 4246.668 kb on + strand at 4246.668 kb on + strand at 4246.668 kb on + strand at 4246.668 kb on + strand at 4246.668 kb on + strand at 4246.668 kb on + strand at 4246.668 kb on + strand at 4246.668 kb on + strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.669 kb on - strand at 4246.693 kb on + strand at 4246.694 kb on - strand at 4246.695 kb on + strand at 4246.695 kb on + strand at 4246.695 kb on + strand at 4246.695 kb on + strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.696 kb on - strand at 4246.736 kb on + strand at 4246.785 kb on + strand at 4246.798 kb on + strand at 4246.799 kb on - strand at 4246.842 kb on - strand, within DZA65_RS19600 at 4246.921 kb on + strand, within DZA65_RS19600 at 4246.921 kb on + strand, within DZA65_RS19600 at 4246.921 kb on + strand, within DZA65_RS19600 at 4246.922 kb on - strand, within DZA65_RS19600 at 4246.922 kb on - strand, within DZA65_RS19600 at 4246.922 kb on - strand, within DZA65_RS19600 at 4246.922 kb on - strand, within DZA65_RS19600 at 4246.922 kb on - strand, within DZA65_RS19600 at 4246.924 kb on + strand, within DZA65_RS19600 at 4246.924 kb on + strand, within DZA65_RS19600 at 4246.924 kb on + strand, within DZA65_RS19600 at 4246.924 kb on + strand, within DZA65_RS19600 at 4246.924 kb on + strand, within DZA65_RS19600 at 4246.924 kb on + strand, within DZA65_RS19600 at 4246.924 kb on + strand, within DZA65_RS19600 at 4246.924 kb on + strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.925 kb on - strand, within DZA65_RS19600 at 4246.937 kb on + strand, within DZA65_RS19600 at 4246.937 kb on + strand, within DZA65_RS19600 at 4246.937 kb on + strand, within DZA65_RS19600 at 4246.938 kb on - strand, within DZA65_RS19600 at 4246.938 kb on - strand, within DZA65_RS19600 at 4246.946 kb on + strand at 4246.946 kb on + strand at 4246.946 kb on + strand at 4246.946 kb on + strand at 4246.946 kb on + strand at 4246.946 kb on + strand at 4246.946 kb on + strand at 4246.946 kb on + strand at 4246.947 kb on - strand at 4246.947 kb on - strand at 4246.947 kb on - strand at 4246.947 kb on - strand at 4246.947 kb on - strand at 4246.947 kb on - strand at 4246.947 kb on - strand at 4246.947 kb on - strand at 4246.947 kb on - strand at 4246.949 kb on + strand at 4246.949 kb on + strand at 4246.949 kb on + strand at 4246.950 kb on - strand at 4246.950 kb on - strand at 4246.954 kb on + strand at 4246.954 kb on + strand at 4246.955 kb on - strand at 4247.194 kb on + strand, within DZA65_RS22990 at 4247.194 kb on + strand, within DZA65_RS22990 at 4247.195 kb on - strand, within DZA65_RS22990 at 4247.200 kb on + strand, within DZA65_RS22990 at 4247.200 kb on + strand, within DZA65_RS22990 at 4247.200 kb on + strand, within DZA65_RS22990 at 4247.201 kb on - strand, within DZA65_RS22990 at 4247.201 kb on - strand, within DZA65_RS22990 at 4247.201 kb on - strand, within DZA65_RS22990 at 4247.201 kb on - strand, within DZA65_RS22990 at 4247.395 kb on - strand, within DZA65_RS22990 at 4247.396 kb on + strand, within DZA65_RS22990 at 4247.396 kb on + strand, within DZA65_RS22990 at 4247.397 kb on - strand at 4247.397 kb on - strand at 4247.397 kb on - strand at 4247.397 kb on - strand at 4247.397 kb on - strand at 4247.397 kb on - strand at 4247.397 kb on - strand at 4247.397 kb on - strand at 4247.400 kb on + strand at 4247.401 kb on - strand at 4247.401 kb on - strand at 4247.401 kb on - strand at 4247.442 kb on + strand at 4247.443 kb on - strand at 4247.443 kb on - strand at 4247.487 kb on + strand at 4247.487 kb on + strand at 4247.487 kb on + strand at 4247.487 kb on + strand at 4247.488 kb on - strand at 4247.488 kb on - strand at 4247.492 kb on + strand at 4247.492 kb on + strand at 4247.494 kb on + strand at 4247.494 kb on + strand at 4247.494 kb on + strand at 4247.494 kb on + strand at 4247.495 kb on - strand at 4247.515 kb on + strand at 4247.515 kb on + strand at 4247.590 kb on + strand at 4247.590 kb on + strand at 4247.590 kb on + strand at 4247.595 kb on + strand at 4247.595 kb on + strand at 4247.595 kb on + strand at 4247.595 kb on + strand at 4247.595 kb on + strand at 4247.595 kb on + strand at 4247.597 kb on + strand at 4247.597 kb on + strand at 4248.818 kb on + strand at 4248.818 kb on + strand at 4248.818 kb on + strand at 4248.819 kb on - strand at 4248.819 kb on - strand at 4248.866 kb on + strand at 4248.867 kb on - strand at 4248.867 kb on - strand at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.995 kb on + strand, within DZA65_RS19615 at 4248.996 kb on - strand, within DZA65_RS19615 at 4248.996 kb on - strand, within DZA65_RS19615 at 4248.996 kb on - strand, within DZA65_RS19615 at 4249.090 kb on + strand, within DZA65_RS19615 at 4249.090 kb on + strand, within DZA65_RS19615 at 4249.090 kb on + strand, within DZA65_RS19615 at 4249.090 kb on + strand, within DZA65_RS19615 at 4249.091 kb on - strand, within DZA65_RS19615 at 4249.131 kb on + strand at 4249.132 kb on - strand, within DZA65_RS19615 at 4249.132 kb on - strand, within DZA65_RS19615 at 4249.132 kb on - strand, within DZA65_RS19615 at 4249.132 kb on - strand, within DZA65_RS19615 at 4249.132 kb on - strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.133 kb on + strand, within DZA65_RS19615 at 4249.134 kb on - strand, within DZA65_RS19615 at 4249.262 kb on + strand, within DZA65_RS19615 at 4249.388 kb on + strand at 4249.389 kb on - strand at 4249.451 kb on + strand at 4249.451 kb on + strand at 4249.451 kb on + strand at 4249.452 kb on - strand at 4249.452 kb on - strand at 4249.489 kb on + strand at 4249.489 kb on + strand at 4249.490 kb on - strand at 4249.490 kb on - strand at 4249.490 kb on - strand at 4249.490 kb on - strand at 4249.490 kb on - strand at 4249.522 kb on - strand at 4249.522 kb on - strand at 4249.522 kb on - strand at 4249.628 kb on + strand, within DZA65_RS19620 at 4249.628 kb on + strand, within DZA65_RS19620 at 4249.628 kb on + strand at 4249.628 kb on + strand, within DZA65_RS19620 at 4249.629 kb on - strand, within DZA65_RS19620 at 4249.629 kb on - strand, within DZA65_RS19620 at 4249.629 kb on - strand, within DZA65_RS19620 at 4249.629 kb on - strand, within DZA65_RS19620 at 4249.629 kb on - strand, within DZA65_RS19620 at 4249.639 kb on + strand, within DZA65_RS19620 at 4249.639 kb on + strand, within DZA65_RS19620 at 4249.640 kb on - strand, within DZA65_RS19620 at 4249.640 kb on - strand, within DZA65_RS19620 at 4249.640 kb on - strand, within DZA65_RS19620 at 4249.640 kb on - strand, within DZA65_RS19620 at 4249.703 kb on - strand, within DZA65_RS19620 at 4249.743 kb on + strand, within DZA65_RS19620 at 4249.743 kb on + strand, within DZA65_RS19620 at 4249.743 kb on + strand, within DZA65_RS19620 at 4249.744 kb on - strand, within DZA65_RS19620 at 4249.744 kb on - strand, within DZA65_RS19620 at 4249.744 kb on - strand, within DZA65_RS19620 at 4249.744 kb on - strand, within DZA65_RS19620 at 4249.744 kb on - strand, within DZA65_RS19620 at 4249.744 kb on - strand, within DZA65_RS19620
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,246,616 + -0.5 4,246,616 + -1.5 4,246,617 - +0.5 4,246,666 - -0.2 4,246,666 - -0.5 4,246,666 - -0.2 4,246,668 + +1.1 4,246,668 + +0.7 4,246,668 + +1.4 4,246,668 + +0.5 4,246,668 + -0.5 4,246,668 + -0.7 4,246,668 + +0.8 4,246,668 + -0.5 4,246,669 - -1.2 4,246,669 - -1.1 4,246,669 - -2.1 4,246,669 - +0.1 4,246,669 - -0.5 4,246,669 - +0.1 4,246,669 - -0.1 4,246,669 - -0.9 4,246,669 - +1.1 4,246,669 - -1.0 4,246,669 - -0.5 4,246,669 - -0.2 4,246,669 - -0.1 4,246,669 - -1.2 4,246,693 + -1.7 4,246,694 - -1.9 4,246,695 + -0.9 4,246,695 + -1.5 4,246,695 + -0.9 4,246,695 + -0.2 4,246,696 - +1.1 4,246,696 - -0.9 4,246,696 - -0.2 4,246,696 - +0.8 4,246,696 - +1.1 4,246,696 - -0.8 4,246,696 - -0.3 4,246,696 - +1.1 4,246,696 - +0.5 4,246,736 + +1.4 4,246,785 + -0.3 4,246,798 + -1.2 4,246,799 - -0.2 4,246,842 - DZA65_RS19600 0.25 +0.3 4,246,921 + DZA65_RS19600 0.74 -0.5 4,246,921 + DZA65_RS19600 0.74 -1.5 4,246,921 + DZA65_RS19600 0.74 -0.1 4,246,922 - DZA65_RS19600 0.75 -0.6 4,246,922 - DZA65_RS19600 0.75 -0.0 4,246,922 - DZA65_RS19600 0.75 -2.2 4,246,922 - DZA65_RS19600 0.75 -0.9 4,246,922 - DZA65_RS19600 0.75 -1.4 4,246,924 + DZA65_RS19600 0.76 -1.1 4,246,924 + DZA65_RS19600 0.76 -1.8 4,246,924 + DZA65_RS19600 0.76 -0.2 4,246,924 + DZA65_RS19600 0.76 +0.1 4,246,924 + DZA65_RS19600 0.76 +1.1 4,246,924 + DZA65_RS19600 0.76 +0.7 4,246,924 + DZA65_RS19600 0.76 +1.1 4,246,924 + DZA65_RS19600 0.76 +1.5 4,246,925 - DZA65_RS19600 0.77 -0.1 4,246,925 - DZA65_RS19600 0.77 +1.7 4,246,925 - DZA65_RS19600 0.77 -0.5 4,246,925 - DZA65_RS19600 0.77 -0.7 4,246,925 - DZA65_RS19600 0.77 -0.4 4,246,925 - DZA65_RS19600 0.77 +0.8 4,246,925 - DZA65_RS19600 0.77 +0.1 4,246,925 - DZA65_RS19600 0.77 -0.8 4,246,925 - DZA65_RS19600 0.77 +0.1 4,246,925 - DZA65_RS19600 0.77 -0.9 4,246,925 - DZA65_RS19600 0.77 +0.0 4,246,925 - DZA65_RS19600 0.77 -1.0 4,246,937 + DZA65_RS19600 0.84 -1.8 4,246,937 + DZA65_RS19600 0.84 +0.1 4,246,937 + DZA65_RS19600 0.84 -0.5 4,246,938 - DZA65_RS19600 0.85 +0.5 4,246,938 - DZA65_RS19600 0.85 -0.9 4,246,946 + -0.5 4,246,946 + -0.6 4,246,946 + -1.0 4,246,946 + -1.6 4,246,946 + +0.1 4,246,946 + -1.1 4,246,946 + -0.7 4,246,946 + +0.6 4,246,947 - -1.7 4,246,947 - -2.1 4,246,947 - -0.1 4,246,947 - -0.1 4,246,947 - +0.5 4,246,947 - +0.8 4,246,947 - -1.3 4,246,947 - -0.8 4,246,947 - -0.5 4,246,949 + -0.9 4,246,949 + +2.7 4,246,949 + +0.6 4,246,950 - +0.8 4,246,950 - -1.9 4,246,954 + -0.7 4,246,954 + +0.4 4,246,955 - -1.6 4,247,194 + DZA65_RS22990 0.19 +0.4 4,247,194 + DZA65_RS22990 0.19 -0.9 4,247,195 - DZA65_RS22990 0.20 -0.0 4,247,200 + DZA65_RS22990 0.22 +0.6 4,247,200 + DZA65_RS22990 0.22 -1.7 4,247,200 + DZA65_RS22990 0.22 +0.1 4,247,201 - DZA65_RS22990 0.22 -2.1 4,247,201 - DZA65_RS22990 0.22 -0.5 4,247,201 - DZA65_RS22990 0.22 -1.5 4,247,201 - DZA65_RS22990 0.22 +0.3 4,247,395 - DZA65_RS22990 0.89 -0.1 4,247,396 + DZA65_RS22990 0.90 -0.7 4,247,396 + DZA65_RS22990 0.90 -2.4 4,247,397 - -0.2 4,247,397 - +2.1 4,247,397 - -1.5 4,247,397 - +0.0 4,247,397 - -3.1 4,247,397 - -2.8 4,247,397 - +0.1 4,247,397 - -1.6 4,247,400 + -0.8 4,247,401 - -0.2 4,247,401 - -0.9 4,247,401 - -1.0 4,247,442 + -0.4 4,247,443 - -0.3 4,247,443 - -1.4 4,247,487 + +0.4 4,247,487 + -0.3 4,247,487 + -2.0 4,247,487 + -0.2 4,247,488 - -1.4 4,247,488 - -1.5 4,247,492 + -0.5 4,247,492 + -0.1 4,247,494 + -0.7 4,247,494 + -1.0 4,247,494 + -1.2 4,247,494 + -2.1 4,247,495 - -1.2 4,247,515 + -0.0 4,247,515 + -0.6 4,247,590 + +0.2 4,247,590 + +0.8 4,247,590 + -0.2 4,247,595 + +0.5 4,247,595 + -2.2 4,247,595 + +2.1 4,247,595 + +1.1 4,247,595 + -0.7 4,247,595 + -0.7 4,247,597 + -0.5 4,247,597 + -0.9 4,248,818 + +0.1 4,248,818 + -0.9 4,248,818 + -0.9 4,248,819 - +0.1 4,248,819 - -0.7 4,248,866 + +0.7 4,248,867 - +0.2 4,248,867 - -1.3 4,248,995 + DZA65_RS19615 0.23 -1.4 4,248,995 + DZA65_RS19615 0.23 -0.2 4,248,995 + DZA65_RS19615 0.23 -0.5 4,248,995 + DZA65_RS19615 0.23 -1.6 4,248,995 + DZA65_RS19615 0.23 -1.5 4,248,995 + DZA65_RS19615 0.23 -0.2 4,248,995 + DZA65_RS19615 0.23 -0.1 4,248,995 + DZA65_RS19615 0.23 -1.2 4,248,995 + DZA65_RS19615 0.23 +0.3 4,248,996 - DZA65_RS19615 0.23 -0.5 4,248,996 - DZA65_RS19615 0.23 +0.1 4,248,996 - DZA65_RS19615 0.23 +0.5 4,249,090 + DZA65_RS19615 0.41 -0.9 4,249,090 + DZA65_RS19615 0.41 -0.9 4,249,090 + DZA65_RS19615 0.41 -0.1 4,249,090 + DZA65_RS19615 0.41 -1.7 4,249,091 - DZA65_RS19615 0.42 -1.5 4,249,131 + -1.2 4,249,132 - DZA65_RS19615 0.50 +0.3 4,249,132 - DZA65_RS19615 0.50 -0.1 4,249,132 - DZA65_RS19615 0.50 -0.7 4,249,132 - DZA65_RS19615 0.50 -1.6 4,249,132 - DZA65_RS19615 0.50 +0.8 4,249,133 + DZA65_RS19615 0.50 +0.4 4,249,133 + DZA65_RS19615 0.50 -0.8 4,249,133 + DZA65_RS19615 0.50 -1.2 4,249,133 + DZA65_RS19615 0.50 +3.4 4,249,133 + DZA65_RS19615 0.50 -1.6 4,249,133 + DZA65_RS19615 0.50 +0.1 4,249,133 + DZA65_RS19615 0.50 -1.7 4,249,133 + DZA65_RS19615 0.50 -2.1 4,249,133 + DZA65_RS19615 0.50 -0.1 4,249,133 + DZA65_RS19615 0.50 -1.7 4,249,134 - DZA65_RS19615 0.50 +1.1 4,249,262 + DZA65_RS19615 0.75 -0.5 4,249,388 + +0.8 4,249,389 - -0.1 4,249,451 + +0.8 4,249,451 + +0.2 4,249,451 + -0.2 4,249,452 - -1.7 4,249,452 - -0.7 4,249,489 + -1.2 4,249,489 + -0.1 4,249,490 - +1.1 4,249,490 - -1.2 4,249,490 - +0.4 4,249,490 - +0.1 4,249,490 - -1.1 4,249,522 - +0.1 4,249,522 - -1.2 4,249,522 - +0.5 4,249,628 + DZA65_RS19620 0.20 -0.2 4,249,628 + DZA65_RS19620 0.20 +0.1 4,249,628 + +0.3 4,249,628 + DZA65_RS19620 0.20 +1.1 4,249,629 - DZA65_RS19620 0.20 +0.0 4,249,629 - DZA65_RS19620 0.20 +0.8 4,249,629 - DZA65_RS19620 0.20 +0.1 4,249,629 - DZA65_RS19620 0.20 +0.9 4,249,629 - DZA65_RS19620 0.20 -0.2 4,249,639 + DZA65_RS19620 0.21 -0.8 4,249,639 + DZA65_RS19620 0.21 -1.9 4,249,640 - DZA65_RS19620 0.21 +1.1 4,249,640 - DZA65_RS19620 0.21 -1.1 4,249,640 - DZA65_RS19620 0.21 -1.5 4,249,640 - DZA65_RS19620 0.21 -0.5 4,249,703 - DZA65_RS19620 0.30 -0.2 4,249,743 + DZA65_RS19620 0.36 +0.4 4,249,743 + DZA65_RS19620 0.36 +0.5 4,249,743 + DZA65_RS19620 0.36 -1.2 4,249,744 - DZA65_RS19620 0.36 +0.5 4,249,744 - DZA65_RS19620 0.36 -1.6 4,249,744 - DZA65_RS19620 0.36 -0.9 4,249,744 - DZA65_RS19620 0.36 -0.9 4,249,744 - DZA65_RS19620 0.36 +0.7 4,249,744 - DZA65_RS19620 0.36 -0.1
Or see this region's nucleotide sequence