Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18995

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS18990 and DZA65_RS18995 are separated by 214 nucleotidesDZA65_RS18995 and DZA65_RS19000 are separated by 13 nucleotides DZA65_RS18990: DZA65_RS18990 - dihydrolipoyl dehydrogenase, at 4,103,484 to 4,104,908 _RS18990 DZA65_RS18995: DZA65_RS18995 - pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase, at 4,105,123 to 4,106,985 _RS18995 DZA65_RS19000: DZA65_RS19000 - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 4,106,999 to 4,109,662 _RS19000 Position (kb) 4105 4106 4107Strain fitness (log2 ratio) -1 0 1at 4105.042 kb on - strandat 4105.056 kb on - strandat 4105.056 kb on - strandat 4105.056 kb on - strandat 4105.056 kb on - strandat 4105.065 kb on + strandat 4105.065 kb on + strandat 4105.066 kb on - strandat 4105.066 kb on - strandat 4105.066 kb on - strandat 4105.066 kb on - strandat 4105.066 kb on - strandat 4105.087 kb on - strandat 4105.087 kb on - strandat 4105.124 kb on + strandat 4107.001 kb on - strandat 4107.001 kb on - strandat 4107.001 kb on - strandat 4107.001 kb on - strandat 4107.001 kb on - strandat 4107.001 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,105,042 - +1.0
4,105,056 - +0.0
4,105,056 - +0.3
4,105,056 - -0.2
4,105,056 - -1.1
4,105,065 + +0.6
4,105,065 + -0.8
4,105,066 - -0.8
4,105,066 - -0.2
4,105,066 - -1.3
4,105,066 - -0.5
4,105,066 - +0.8
4,105,087 - -1.0
4,105,087 - +0.8
4,105,124 + +0.3
4,107,001 - -0.4
4,107,001 - +0.0
4,107,001 - -0.1
4,107,001 - +0.0
4,107,001 - -1.1
4,107,001 - -0.5

Or see this region's nucleotide sequence